View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0543_high_29 (Length: 248)
Name: NF0543_high_29
Description: NF0543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0543_high_29 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 45042093 - 45042338
Alignment:
| Q |
1 |
ttgagaatagactgctttcacgggcgcctgcattggtgacaatcttgttcccaattaaaccatatgagctagatgctggctgcctatgcacatcagacca |
100 |
Q |
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|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45042093 |
ttgagaatagactgctttcacgtgcgcctgcattggtgacaatcttgttcccaattaaaccatatgagctagatgctggctgcctatgcacatcagacca |
45042192 |
T |
|
| Q |
101 |
tgatctcgggtgataattcaatgattcctttgaatccttcagcgcatctaccatgccagcttgtgcaccaaagtgtacgttttctataacttccccagat |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45042193 |
tgatctcgggtgataattcaatgattcctttgaatccttcagcgcatctaccatgccagcttgtgcaccaaagtgtacgttttctataacttccccagat |
45042292 |
T |
|
| Q |
201 |
aaactagtctgtgacattggcaagcctattttttcatctcactcga |
246 |
Q |
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||||||||||||||||||||||||||||||||| ||| || ||||| |
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| T |
45042293 |
aaactagtctgtgacattggcaagcctatttttgcatttctctcga |
45042338 |
T |
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