View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0543_high_8 (Length: 430)

Name: NF0543_high_8
Description: NF0543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0543_high_8
NF0543_high_8
[»] chr1 (3 HSPs)
chr1 (1-111)||(16502238-16502348)
chr1 (20-108)||(24431342-24431430)
chr1 (186-245)||(16501990-16502049)
[»] chr6 (2 HSPs)
chr6 (20-108)||(17450391-17450479)
chr6 (15-81)||(14825148-14825214)
[»] chr3 (1 HSPs)
chr3 (9-111)||(53017872-53017974)


Alignment Details
Target: chr1 (Bit Score: 83; Significance: 4e-39; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 16502348 - 16502238
Alignment:
Q  1 gagttgtccggttcgtggatcctgcacacgacatccagaggaaaagaaagtaatttcataaccaaggtcaaataattgaccaatagagataagcttaaaa 100  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||| |||| ||||||||| ||||||    
T  16502348 gagttgtctggttcgtggatcctgcacacgacatccagaggaagagaaaataatttcataaccaaggtcacataattggccaacagagataagtttaaaa 16502249  T
Q  101 tttagtttagg 111  Q
    |||||||||||    
T  16502248 tttagtttagg 16502238  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 20 - 108
Target Start/End: Complemental strand, 24431430 - 24431342
Alignment:
Q  20 tcctgcacacgacatccagaggaaaagaaagtaatttcataaccaaggtcaaataattgaccaatagagataagcttaaaatttagttt 108  Q
    |||||||||||||| || |||||| ||||||||| |||||||||||| ||| ||||||| |||| ||||||||| ||||| ||||||||    
T  24431430 tcctgcacacgacaaccggaggaagagaaagtaagttcataaccaagatcacataattggccaacagagataagattaaagtttagttt 24431342  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 186 - 245
Target Start/End: Complemental strand, 16502049 - 16501990
Alignment:
Q  186 gagtattaccggaaggaaatagttgcctgagaagagactcgatgtttgtgatagagaatg 245  Q
    |||||||||| |||||||  ||||| |||||||||||||| |||||||||||||| ||||    
T  16502049 gagtattaccagaaggaagaagttgtctgagaagagactcaatgtttgtgatagaaaatg 16501990  T

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Target: chr6 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 20 - 108
Target Start/End: Complemental strand, 17450479 - 17450391
Alignment:
Q  20 tcctgcacacgacatccagaggaaaagaaagtaatttcataaccaaggtcaaataattgaccaatagagataagcttaaaatttagttt 108  Q
    |||||||||||||| || |||||| ||||||||| |||||||||||| ||| ||||||| |||| ||||||||| ||||| ||||||||    
T  17450479 tcctgcacacgacaaccggaggaagagaaagtaagttcataaccaagatcacataattggccaacagagataagattaaagtttagttt 17450391  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 15 - 81
Target Start/End: Complemental strand, 14825214 - 14825148
Alignment:
Q  15 gtggatcctgcacacgacatccagaggaaaagaaagtaatttcataaccaaggtcaaataattgacc 81  Q
    ||||||||||||||||||||||||||||| | || |||| |||||||||||| | | ||||||||||    
T  14825214 gtggatcctgcacacgacatccagaggaagaaaaggtaagttcataaccaagattacataattgacc 14825148  T

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Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 9 - 111
Target Start/End: Original strand, 53017872 - 53017974
Alignment:
Q  9 cggttcgtggatcctgcacacgacatccagaggaaaagaaagtaatttcataaccaaggtcaaataattgaccaatagagataagcttaaaatttagttt 108  Q
    |||| ||||||||||||||| || ||| |||| || ||||  |||||||||||||||||||| ||||||| |||| ||||||||| ||||| || |||||    
T  53017872 cggtccgtggatcctgcacatgatatcaagagaaagagaatataatttcataaccaaggtcacataattgtccaacagagataaggttaaagttgagttt 53017971  T
Q  109 agg 111  Q
    |||    
T  53017972 agg 53017974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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