View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0543_high_9 (Length: 422)

Name: NF0543_high_9
Description: NF0543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0543_high_9
NF0543_high_9
[»] chr7 (25 HSPs)
chr7 (84-219)||(10461585-10461720)
chr7 (84-228)||(36107051-36107195)
chr7 (83-228)||(24954240-24954385)
chr7 (84-228)||(33439089-33439233)
chr7 (104-228)||(37633092-37633216)
chr7 (84-228)||(41986711-41986855)
chr7 (225-287)||(10461585-10461647)
chr7 (103-223)||(32538003-32538123)
chr7 (104-228)||(40210610-40210734)
chr7 (111-184)||(28363151-28363224)
chr7 (102-230)||(26624276-26624403)
chr7 (89-172)||(24684923-24685006)
chr7 (102-184)||(16279171-16279253)
chr7 (83-184)||(44959171-44959272)
chr7 (114-230)||(44524443-44524558)
chr7 (84-162)||(23237496-23237574)
chr7 (111-180)||(3935881-3935950)
chr7 (102-180)||(3407974-3408052)
chr7 (84-162)||(23223416-23223494)
chr7 (104-230)||(49105873-49105998)
chr7 (225-296)||(36107124-36107195)
chr7 (225-296)||(41986784-41986855)
chr7 (102-172)||(8804876-8804946)
chr7 (225-298)||(49105873-49105946)
chr7 (232-296)||(24954321-24954385)
[»] chr4 (28 HSPs)
chr4 (85-228)||(26070983-26071126)
chr4 (84-228)||(23722830-23722974)
chr4 (84-228)||(27925756-27925900)
chr4 (84-230)||(16822116-16822260)
chr4 (102-230)||(23185440-23185567)
chr4 (84-228)||(32951759-32951903)
chr4 (225-296)||(26071055-26071126)
chr4 (84-192)||(39068631-39068738)
chr4 (85-219)||(42546997-42547132)
chr4 (87-228)||(11818778-11818919)
chr4 (84-196)||(15329250-15329362)
chr4 (84-228)||(43343047-43343191)
chr4 (111-230)||(24221805-24221923)
chr4 (84-230)||(26688384-26688528)
chr4 (111-230)||(9958327-9958445)
chr4 (87-131)||(2208713-2208757)
chr4 (84-230)||(35668083-35668227)
chr4 (84-191)||(41477418-41477524)
chr4 (103-230)||(30543637-30543762)
chr4 (86-180)||(890978-891072)
chr4 (225-298)||(23185440-23185513)
chr4 (135-221)||(53153322-53153408)
chr4 (225-298)||(16822116-16822188)
chr4 (219-296)||(27925756-27925833)
chr4 (225-296)||(11818778-11818849)
chr4 (111-177)||(54578591-54578657)
chr4 (229-298)||(24221805-24221874)
chr4 (229-298)||(26688384-26688453)
[»] chr8 (25 HSPs)
chr8 (84-230)||(15004147-15004293)
chr8 (84-219)||(22342967-22343101)
chr8 (84-219)||(22354627-22354761)
chr8 (84-230)||(30233434-30233580)
chr8 (84-230)||(31628144-31628290)
chr8 (225-298)||(15004220-15004293)
chr8 (111-220)||(39330537-39330645)
chr8 (84-228)||(232587-232731)
chr8 (84-228)||(708998-709142)
chr8 (84-228)||(746210-746354)
chr8 (84-228)||(870105-870249)
chr8 (104-228)||(33365598-33365722)
chr8 (87-186)||(3210-3309)
chr8 (225-287)||(22342967-22343029)
chr8 (225-287)||(22354627-22354689)
chr8 (104-230)||(24617336-24617461)
chr8 (84-220)||(13248028-13248163)
chr8 (88-172)||(41492399-41492483)
chr8 (111-223)||(37780863-37780975)
chr8 (228-298)||(30233434-30233504)
chr8 (225-298)||(31628144-31628217)
chr8 (83-184)||(39918566-39918667)
chr8 (140-228)||(27822587-27822675)
chr8 (84-215)||(37675331-37675461)
chr8 (103-219)||(21467805-21467921)
[»] chr3 (21 HSPs)
chr3 (84-228)||(44269769-44269913)
chr3 (84-228)||(1672577-1672721)
chr3 (84-228)||(48432529-48432673)
chr3 (84-214)||(52965766-52965895)
chr3 (84-228)||(4773822-4773966)
chr3 (84-228)||(45222324-45222468)
chr3 (84-228)||(39084723-39084867)
chr3 (86-172)||(8262529-8262615)
chr3 (84-219)||(12025562-12025697)
chr3 (225-296)||(1672577-1672648)
chr3 (225-296)||(44269842-44269913)
chr3 (92-172)||(40949035-40949115)
chr3 (87-214)||(15042642-15042768)
chr3 (84-192)||(39069141-39069248)
chr3 (111-230)||(46552224-46552342)
chr3 (102-148)||(7840988-7841033)
chr3 (225-296)||(4773895-4773966)
chr3 (225-296)||(48432602-48432673)
chr3 (225-282)||(52965766-52965823)
chr3 (102-154)||(31108707-31108759)
chr3 (122-230)||(41237218-41237325)
[»] chr1 (42 HSPs)
chr1 (83-228)||(31199928-31200073)
chr1 (84-219)||(8059624-8059759)
chr1 (84-219)||(50050370-50050505)
chr1 (84-228)||(21969326-21969470)
chr1 (84-230)||(32829340-32829484)
chr1 (84-228)||(40710156-40710300)
chr1 (84-228)||(14796022-14796166)
chr1 (84-228)||(14804896-14805040)
chr1 (314-410)||(20025537-20025625)
chr1 (84-230)||(1246848-1246993)
chr1 (104-228)||(19584433-19584557)
chr1 (84-172)||(43312701-43312789)
chr1 (84-228)||(51250613-51250757)
chr1 (84-230)||(7145495-7145640)
chr1 (91-172)||(26262185-26262266)
chr1 (84-178)||(29030387-29030481)
chr1 (104-184)||(38036544-38036624)
chr1 (84-230)||(28250893-28251038)
chr1 (89-194)||(17190051-17190156)
chr1 (84-172)||(31964296-31964385)
chr1 (84-228)||(39331189-39331333)
chr1 (84-230)||(42666621-42666765)
chr1 (84-184)||(14940047-14940146)
chr1 (84-184)||(14950054-14950153)
chr1 (84-184)||(14954295-14954394)
chr1 (225-296)||(40710156-40710227)
chr1 (225-298)||(28250965-28251038)
chr1 (225-298)||(32829411-32829484)
chr1 (84-172)||(5290564-5290650)
chr1 (103-219)||(24253218-24253333)
chr1 (84-179)||(220493-220588)
chr1 (225-296)||(14796022-14796093)
chr1 (225-296)||(14804896-14804967)
chr1 (225-296)||(21969326-21969397)
chr1 (126-217)||(28881931-28882020)
chr1 (84-219)||(30806348-30806482)
chr1 (225-296)||(31200002-31200073)
chr1 (225-287)||(8059624-8059686)
chr1 (225-287)||(50050370-50050432)
chr1 (91-172)||(48788519-48788600)
chr1 (84-148)||(5972872-5972936)
chr1 (84-184)||(15836489-15836588)
[»] scaffold0001 (2 HSPs)
scaffold0001 (84-228)||(396834-396978)
scaffold0001 (225-296)||(396907-396978)
[»] chr5 (17 HSPs)
chr5 (84-228)||(23928408-23928552)
chr5 (84-228)||(9889248-9889392)
chr5 (84-230)||(34696268-34696414)
chr5 (84-228)||(29289907-29290051)
chr5 (84-228)||(35667897-35668041)
chr5 (84-185)||(40484265-40484366)
chr5 (111-194)||(4421028-4421110)
chr5 (84-230)||(6011196-6011341)
chr5 (104-228)||(14633760-14633884)
chr5 (225-296)||(23928408-23928479)
chr5 (225-298)||(34696341-34696414)
chr5 (111-191)||(12854169-12854248)
chr5 (85-221)||(26362604-26362739)
chr5 (102-133)||(7945793-7945824)
chr5 (225-296)||(9889248-9889319)
chr5 (88-129)||(425608-425649)
chr5 (225-298)||(6011196-6011269)
[»] chr2 (24 HSPs)
chr2 (88-228)||(8423859-8423999)
chr2 (84-228)||(30357437-30357581)
chr2 (86-228)||(34899164-34899306)
chr2 (84-228)||(22416442-22416586)
chr2 (87-194)||(36441253-36441359)
chr2 (84-228)||(27451696-27451840)
chr2 (84-228)||(17473613-17473755)
chr2 (84-220)||(20565368-20565503)
chr2 (146-220)||(18765142-18765216)
chr2 (84-157)||(10789141-10789214)
chr2 (83-220)||(18890554-18890690)
chr2 (142-230)||(13369796-13369884)
chr2 (137-184)||(8371573-8371620)
chr2 (136-186)||(10789089-10789139)
chr2 (219-298)||(13369796-13369875)
chr2 (225-288)||(18765153-18765216)
chr2 (84-145)||(16749301-16749362)
chr2 (102-230)||(17206255-17206382)
chr2 (88-192)||(42956998-42957102)
chr2 (225-296)||(8423859-8423930)
chr2 (225-288)||(20565368-20565431)
chr2 (84-220)||(24140573-24140712)
chr2 (151-228)||(37576053-37576130)
chr2 (84-129)||(37576258-37576303)
[»] chr6 (15 HSPs)
chr6 (84-228)||(8769923-8770067)
chr6 (83-193)||(18999901-19000011)
chr6 (104-228)||(3100550-3100674)
chr6 (83-219)||(30125803-30125939)
chr6 (84-171)||(24261188-24261275)
chr6 (83-220)||(23769829-23769962)
chr6 (102-230)||(31261084-31261210)
chr6 (102-220)||(24496303-24496420)
chr6 (83-203)||(9605919-9606038)
chr6 (82-177)||(6939929-6940024)
chr6 (233-296)||(8770004-8770067)
chr6 (90-177)||(13601141-13601227)
chr6 (225-287)||(30125803-30125865)
chr6 (84-186)||(31834592-31834694)
chr6 (225-261)||(18999901-18999937)
[»] scaffold0017 (1 HSPs)
scaffold0017 (102-228)||(28735-28861)
[»] scaffold0688 (4 HSPs)
scaffold0688 (111-230)||(2751-2869)
scaffold0688 (111-230)||(4418-4536)
scaffold0688 (225-298)||(2751-2824)
scaffold0688 (225-298)||(4418-4491)
[»] scaffold0954 (1 HSPs)
scaffold0954 (84-162)||(163-241)
[»] scaffold0123 (1 HSPs)
scaffold0123 (103-180)||(26395-26472)
[»] scaffold0223 (1 HSPs)
scaffold0223 (83-174)||(28528-28617)
[»] scaffold0004 (1 HSPs)
scaffold0004 (42-70)||(247398-247426)


Alignment Details
Target: chr7 (Bit Score: 116; Significance: 7e-59; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 84 - 219
Target Start/End: Complemental strand, 10461720 - 10461585
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgtt 183  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  10461720 taggggtgtaagtgggccggtttgggttgggtttggccaaacccaaaacccaaaccatatagggtactccggtttgggtgaggtaaaatgtccatccgtt 10461621  T
Q  184 aaactattgggccggtttggataaacccactaattt 219  Q
    |||||||||||||||||||| |||||||||||||||    
T  10461620 aaactattgggccggtttgggtaaacccactaattt 10461585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 84 - 228
Target Start/End: Original strand, 36107051 - 36107195
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgtt 183  Q
    |||||||||| ||||| || |||||||||||||||||||||||||| |||  |||||||||||||| |||||||||||| ||||||||| ||||||||||    
T  36107051 taggggtgtaagtgggtcgatttgggttgggtttggccaaacccaagacccgaaccatatagggtactccggtttgggttaggtaaaatatccacccgtt 36107150  T
Q  184 aaactattgggccggtttggataaacccactaattttcggattgg 228  Q
    ||| || ||||  |||||||  |||||||||||||| ||| ||||    
T  36107151 aaattaatgggtgggtttgggcaaacccactaatttccggtttgg 36107195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 83 - 228
Target Start/End: Original strand, 24954240 - 24954385
Alignment:
Q  83 ataggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgt 182  Q
    ||||||||||| |||||  | ||||| |||||||||| ||||||||| |||  ||||||||| |||| |||||||||| | ||||||||| |||||||||    
T  24954240 ataggggtgtaagtgggttgatttggattgggtttggacaaacccaagacccgaaccatataaggtactccggtttggattaggtaaaatatccacccgt 24954339  T
Q  183 taaactattgggccggtttggataaacccactaattttcggattgg 228  Q
    |||| || ||||  |||||||  |||||||||||||| ||| ||||    
T  24954340 taaattaatgggtgggtttgggcaaacccactaatttccggtttgg 24954385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 84 - 228
Target Start/End: Complemental strand, 33439233 - 33439089
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgtt 183  Q
    |||||||||| |||||  | ||||||||||||||||||||||| || |||  ||||||||||| || ||||||||||||  |||||||| ||||||||||    
T  33439233 taggggtgtaagtgggttgatttgggttgggtttggccaaacctaagacccgaaccatataggatactccggtttgggtttggtaaaatatccacccgtt 33439134  T
Q  184 aaactattgggccggtttggataaacccactaattttcggattgg 228  Q
    ||| || ||||  |||||||  ||||||||| |||| ||| ||||    
T  33439133 aaattaatgggtgggtttgggcaaacccactcatttccggtttgg 33439089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 104 - 228
Target Start/End: Complemental strand, 37633216 - 37633092
Alignment:
Q  104 tttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgttaaactattgggccggtttgg 203  Q
    ||||||||||||||| |||||||||| |||  || |||||||||||||||||||||||||||||| ||||||||||  ||| | || ||||   ||||||    
T  37633216 tttgggttgggtttgaccaaacccaatacccgaatcatatagggtattccggtttgggtgaggtagaatgtccacctattatattaatgggtgagtttgg 37633117  T
Q  204 ataaacccactaattttcggattgg 228  Q
    | |||||||||| ||||||| ||||    
T  37633116 acaaacccactagttttcggtttgg 37633092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 84 - 228
Target Start/End: Original strand, 41986711 - 41986855
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgtt 183  Q
    |||||||||| ||||| || ||||||||||||||| | |||||||||||   ||||||||||| || ||  |||||||| ||||||||| ||| ||||||    
T  41986711 taggggtgtaagtgggtcgatttgggttgggtttgactaaacccaaaactcgaaccatataggatactctagtttgggttaggtaaaatatccgcccgtt 41986810  T
Q  184 aaactattgggccggtttggataaacccactaattttcggattgg 228  Q
    ||| || ||||  |||||||  |||||||||||||||||| ||||    
T  41986811 aaattaatgggtgggtttgggcaaacccactaattttcggtttgg 41986855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 225 - 287
Target Start/End: Complemental strand, 10461647 - 10461585
Alignment:
Q  225 ttgggtgaggtaaaatgtccacccgttaaactattgggccggtttggataaacccactaattt 287  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  10461647 ttgggtgaggtaaaatgtccatccgttaaactattgggccggtttgggtaaacccactaattt 10461585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 103 - 223
Target Start/End: Original strand, 32538003 - 32538123
Alignment:
Q  103 gtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgttaaactattgggccggtttg 202  Q
    |||| |||||||||||  ||||||||| |||| |||||||||||||| ||||||||| |||||||||||||||||||| ||| | || ||||   |||||    
T  32538003 gtttaggttgggtttgatcaaacccaagacctgaaccatatagggtactccggtttgagtgaggtaaaatgtccacccattatattaatgggtgagtttg 32538102  T
Q  203 gataaacccactaattttcgg 223  Q
    || ||| |||||| |||||||    
T  32538103 gacaaatccactagttttcgg 32538123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 104 - 228
Target Start/End: Complemental strand, 40210734 - 40210610
Alignment:
Q  104 tttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgttaaactattgggccggtttgg 203  Q
    |||||||||| ||||| ||||||||| |||  || ||||||||||| ||||||||||||  |||||||| | ||||||||||| || ||||  |||||||    
T  40210734 tttgggttggatttggtcaaacccaagacccgaatcatatagggtactccggtttgggtttggtaaaatattcacccgttaaattaatgggtgggtttgg 40210635  T
Q  204 ataaacccactaattttcggattgg 228  Q
      |||||||||||||||||| ||||    
T  40210634 gcaaacccactaattttcggtttgg 40210610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 111 - 184
Target Start/End: Original strand, 28363151 - 28363224
Alignment:
Q  111 tgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgtta 184  Q
    ||||||||||||||||||| |||  ||||||||||| || ||||||||||||||| ||||| ||||||||||||    
T  28363151 tgggtttggccaaacccaagacccgaaccatataggatactccggtttgggtgagataaaacgtccacccgtta 28363224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 102 - 230
Target Start/End: Original strand, 26624276 - 26624403
Alignment:
Q  102 ggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgttaaactattgggccggttt 201  Q
    |||| ||||||||||| ||||||||||||||| |||| | |||||||| | |||||||| |||||||||||   |||  |||| |||||||||   ||||    
T  26624276 ggttcgggttgggtttagccaaacccaaaacc-aaactaaatagggtacttcggtttggatgaggtaaaataatcacgggttatactattgggtgagttt 26624374  T
Q  202 ggataaacccactaattttcggattgggt 230  Q
    || |||||||||||||||| || ||||||    
T  26624375 gggtaaacccactaatttttgggttgggt 26624403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 89 - 172
Target Start/End: Original strand, 24684923 - 24685006
Alignment:
Q  89 gtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaat 172  Q
    |||||| |||| |||||||||||||||||||||||||||||||||  ||||| |||||  | |||| ||| |||||||||||||    
T  24684923 gtgtacatgggtcggtttgggttgggtttggccaaacccaaaacccgaaccacataggagactccgatttaggtgaggtaaaat 24685006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 102 - 184
Target Start/End: Original strand, 16279171 - 16279253
Alignment:
Q  102 ggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgtta 184  Q
    |||||||| ||||||| |||||||| || ||| |||||||||| | |||||||||||||||||||||||| || |||| ||||    
T  16279171 ggtttgggctgggttttgccaaacctaagacccaaaccatatatgatattccggtttgggtgaggtaaaacgttcacctgtta 16279253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 83 - 184
Target Start/End: Original strand, 44959171 - 44959272
Alignment:
Q  83 ataggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgt 182  Q
    |||||||||| | ||||  ||||||||||| |||||  ||||| ||| ||| |||| ||||||| || ||||||||||||||||||||| ||||||| ||    
T  44959171 ataggggtgttcatgggtgggtttgggttgtgtttgatcaaactcaagacccaaactatataggatactccggtttgggtgaggtaaaacgtccacctgt 44959270  T
Q  183 ta 184  Q
    ||    
T  44959271 ta 44959272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 114 - 230
Target Start/End: Complemental strand, 44524558 - 44524443
Alignment:
Q  114 gtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgttaaactattgggccggtttggataaacccac 213  Q
    |||||||||||||||||||| |||||| |||||||||||  ||||||||||||||||||   || | |||| ||||||| |   ||||||| ||| ||||    
T  44524558 gtttggccaaacccaaaacc-aaaccaaatagggtattctagtttgggtgaggtaaaataatcatctgttatactattgagtgagtttggacaaatccac 44524460  T
Q  214 taattttcggattgggt 230  Q
    ||||||| || ||||||    
T  44524459 taatttttgggttgggt 44524443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 84 - 162
Target Start/End: Original strand, 23237496 - 23237574
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggt 162  Q
    |||||||||||||| | | |||||||||| ||| | |||||||||||||  ||||||||||||||| |||||| |||||    
T  23237496 taggggtgtacgtgagtcagtttgggttgagttcgaccaaacccaaaactcaaaccatatagggtaatccggtctgggt 23237574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 180
Target Start/End: Original strand, 3935881 - 3935950
Alignment:
Q  111 tgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccaccc 180  Q
    ||||||||||||||||||| |||  ||||||||||| || |||||||||| |||| ||||| ||||||||    
T  3935881 tgggtttggccaaacccaagacccgaaccatataggatactccggtttggatgagataaaacgtccaccc 3935950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 180
Target Start/End: Complemental strand, 3408052 - 3407974
Alignment:
Q  102 ggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccaccc 180  Q
    |||||||| |||||||| |||||||||| |||  ||||||||||| || || ||||||||||  |||||| ||||||||    
T  3408052 ggtttgggctgggtttgaccaaacccaagacccgaaccatataggatactcaggtttgggtgtagtaaaacgtccaccc 3407974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 84 - 162
Target Start/End: Original strand, 23223416 - 23223494
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggt 162  Q
    |||||||||||||| | | |||||||||| ||| | ||||| ||||||| ||||||||||| |||| |||||| |||||    
T  23223416 taggggtgtacgtgagtcagtttgggttgagttcgaccaaatccaaaacttaaaccatataaggtaatccggtctgggt 23223494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 230
Target Start/End: Complemental strand, 49105998 - 49105873
Alignment:
Q  104 tttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgttaaactattgggccggtttgg 203  Q
    ||||||||| |||| | ||||||||||| | |||| | ||||  || ||| ||||||||||||||||||  ||||| |||| |||||||||  |||||||    
T  49105998 tttgggttgagtttagtcaaacccaaaatcaaaacaa-atagaatactccagtttgggtgaggtaaaataaccaccagttatactattgggtgggtttgg 49105900  T
Q  204 ataaacccactaattttcggattgggt 230  Q
      ||||||| ||||||| || ||||||    
T  49105899 gcaaacccattaatttttgggttgggt 49105873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 225 - 296
Target Start/End: Original strand, 36107124 - 36107195
Alignment:
Q  225 ttgggtgaggtaaaatgtccacccgttaaactattgggccggtttggataaacccactaattttcggattgg 296  Q
    |||||| ||||||||| ||||||||||||| || ||||  |||||||  |||||||||||||| ||| ||||    
T  36107124 ttgggttaggtaaaatatccacccgttaaattaatgggtgggtttgggcaaacccactaatttccggtttgg 36107195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 225 - 296
Target Start/End: Original strand, 41986784 - 41986855
Alignment:
Q  225 ttgggtgaggtaaaatgtccacccgttaaactattgggccggtttggataaacccactaattttcggattgg 296  Q
    |||||| ||||||||| ||| ||||||||| || ||||  |||||||  |||||||||||||||||| ||||    
T  41986784 ttgggttaggtaaaatatccgcccgttaaattaatgggtgggtttgggcaaacccactaattttcggtttgg 41986855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 102 - 172
Target Start/End: Original strand, 8804876 - 8804946
Alignment:
Q  102 ggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaat 172  Q
    ||||| ||||||||||| |||||| ||| ||||||| |||||||||||||   ||||| ||||| ||||||    
T  8804876 ggtttaggttgggtttgaccaaactcaatacctaaatcatatagggtatttttgtttgagtgagataaaat 8804946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 298
Target Start/End: Complemental strand, 49105946 - 49105873
Alignment:
Q  225 ttgggtgaggtaaaatgtccacccgttaaactattgggccggtttggataaacccactaattttcggattgggt 298  Q
    ||||||||||||||||  ||||| |||| |||||||||  |||||||  ||||||| ||||||| || ||||||    
T  49105946 ttgggtgaggtaaaataaccaccagttatactattgggtgggtttgggcaaacccattaatttttgggttgggt 49105873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 296
Target Start/End: Original strand, 24954321 - 24954385
Alignment:
Q  232 aggtaaaatgtccacccgttaaactattgggccggtttggataaacccactaattttcggattgg 296  Q
    ||||||||| ||||||||||||| || ||||  |||||||  |||||||||||||| ||| ||||    
T  24954321 aggtaaaatatccacccgttaaattaatgggtgggtttgggcaaacccactaatttccggtttgg 24954385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 116; Significance: 7e-59; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 85 - 228
Target Start/End: Original strand, 26070983 - 26071126
Alignment:
Q  85 aggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgtta 184  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  26070983 aggggtgtaagtgggccggtttgggttgggtttggccaaacccaaaacccataccatatagggtactccggtttgggtgaggtaaaatgtccacccgtta 26071082  T
Q  185 aactattgggccggtttggataaacccactaattttcggattgg 228  Q
    ||||||||||||||||||| ||||||||||||||| ||| ||||    
T  26071083 aactattgggccggtttgggtaaacccactaatttccgggttgg 26071126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 84 - 228
Target Start/End: Original strand, 23722830 - 23722974
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgtt 183  Q
    |||||||||||||||| || |||||||||||||||||||||||||| |||  |||||||||||||| |||||||||||| ||||||||| ||||||||||    
T  23722830 taggggtgtacgtgggtcgatttgggttgggtttggccaaacccaagacccgaaccatatagggtactccggtttgggttaggtaaaatatccacccgtt 23722929  T
Q  184 aaactattgggccggtttggataaacccactaattttcggattgg 228  Q
    ||| || ||||  ||||||   ||||||| |||||| ||| ||||    
T  23722930 aaattaatgggtgggtttgagcaaacccattaatttccggtttgg 23722974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 84 - 228
Target Start/End: Complemental strand, 27925900 - 27925756
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgtt 183  Q
    |||||||||| ||||| || |||||||||||||||| ||||||||| |||  |||||||||||||| | |||||||||| || |||||| ||||||||||    
T  27925900 taggggtgtaagtgggtcgatttgggttgggtttggtcaaacccaagacccgaaccatatagggtacttcggtttgggttagttaaaatatccacccgtt 27925801  T
Q  184 aaactattgggccggtttggataaacccactaattttcggattgg 228  Q
    ||| || ||||  |||||||| |||| ||||||||||||| ||||    
T  27925800 aaattaatgggtgggtttggacaaactcactaattttcggtttgg 27925756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 84 - 230
Target Start/End: Complemental strand, 16822260 - 16822116
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgtt 183  Q
    ||||||||| ||||||  |||||||||||||||||| ||||||||| ||| |||| | |||||||| |||||||||||||||| |||||  |||||||||    
T  16822260 taggggtgttcgtgggtgggtttgggttgggtttggtcaaacccaagacc-aaactaaatagggtactccggtttgggtgagg-aaaataaccacccgtt 16822163  T
Q  184 aaactattgggccggtttggataaacccactaattttcggattgggt 230  Q
    | |||||||||  |||||||| ||||||||||||||| || ||||||    
T  16822162 atactattgggtgggtttggacaaacccactaatttttgggttgggt 16822116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 102 - 230
Target Start/End: Complemental strand, 23185567 - 23185440
Alignment:
Q  102 ggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgttaaactattgggccggttt 201  Q
    ||||||||||| |||||||||||||||||| | |||||| ||||| || ||||||||||||||||||||||  ||||  |||| |||||||||| |||||    
T  23185567 ggtttgggttgagtttggccaaacccaaaatc-aaaccaaataggatactccggtttgggtgaggtaaaataaccacatgttatactattgggcgggttt 23185469  T
Q  202 ggataaacccactaattttcggattgggt 230  Q
    ||| ||||||||||||||| || ||||||    
T  23185468 ggacaaacccactaatttttgggttgggt 23185440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 84 - 228
Target Start/End: Complemental strand, 32951903 - 32951759
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgtt 183  Q
    |||||||||||||||| || |||||||||||||| ||||||||||| |||  ||||||||| ||||||| ||||||||| ||||||||| |||| || ||    
T  32951903 taggggtgtacgtgggtcgatttgggttgggtttagccaaacccaagacccgaaccatataaggtattctggtttgggttaggtaaaatatccatccatt 32951804  T
Q  184 aaactattgggccggtttggataaacccactaattttcggattgg 228  Q
     || || ||||  |||||||| |||||||||||||| ||| ||||    
T  32951803 gaattaatgggtgggtttggacaaacccactaatttccggtttgg 32951759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 225 - 296
Target Start/End: Original strand, 26071055 - 26071126
Alignment:
Q  225 ttgggtgaggtaaaatgtccacccgttaaactattgggccggtttggataaacccactaattttcggattgg 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||    
T  26071055 ttgggtgaggtaaaatgtccacccgttaaactattgggccggtttgggtaaacccactaatttccgggttgg 26071126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 84 - 192
Target Start/End: Complemental strand, 39068738 - 39068631
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgtt 183  Q
    ||||||||| ||||||  |||||||||||||||||||||||| ||||||| |||||| ||| |||  ||||||||||||||||||||||  |||||||||    
T  39068738 taggggtgttcgtgggtgggtttgggttgggtttggccaaactcaaaacc-aaaccaaataaggttctccggtttgggtgaggtaaaataaccacccgtt 39068640  T
Q  184 aaactattg 192  Q
    | |||||||    
T  39068639 atactattg 39068631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 85 - 219
Target Start/End: Original strand, 42546997 - 42547132
Alignment:
Q  85 aggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtcca-cccgtt 183  Q
    ||||||||| ||||| || ||||| |||||||||||||||||||| | |  |||||||||||||| |||||||||||| || |||||| |||| ||||||    
T  42546997 aggggtgtaagtgggtcgatttggattgggtttggccaaacccaagatccgaaccatatagggtactccggtttgggttagataaaatatccaccccgtt 42547096  T
Q  184 aaactattgggccggtttggataaacccactaattt 219  Q
    ||| || ||||  |||||||  ||||||||||||||    
T  42547097 aaattaatgggtgggtttgggcaaacccactaattt 42547132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 87 - 228
Target Start/End: Complemental strand, 11818919 - 11818778
Alignment:
Q  87 gggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgttaaa 186  Q
    ||||||||||||| || ||||| |||||||||| ||||| ||| || | ||||||| | |||| || ||||||||||||||||| |   ||||||||| |    
T  11818919 gggtgtacgtgggtcgatttggattgggtttggtcaaactcaagacttgaaccatacaaggtactctggtttgggtgaggtaaagtaatcacccgttaca 11818820  T
Q  187 ctattgggccggtttggataaacccactaattttcggattgg 228  Q
     |||||||  ||||||||||||||||||||||| ||| ||||    
T  11818819 ttattgggttggtttggataaacccactaatttccggtttgg 11818778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 84 - 196
Target Start/End: Original strand, 15329250 - 15329362
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgtt 183  Q
    ||||||||||||| || | ||||||||||| ||||  ||||||||||||| |||||||||||||| |||| ||||| ||||||||||||  |||||| ||    
T  15329250 taggggtgtacgtaggtcagtttgggttggatttgatcaaacccaaaacccaaaccatatagggttttccagtttgagtgaggtaaaataaccacccatt 15329349  T
Q  184 aaactattgggcc 196  Q
    | || ||||||||    
T  15329350 acaccattgggcc 15329362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 84 - 228
Target Start/End: Complemental strand, 43343191 - 43343047
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgtt 183  Q
    ||||||||| ||||||  |||||||||||| |||||| |||||||| |||  ||||||||| | || ||||||||||||| ||||||| |||||||| ||    
T  43343191 taggggtgttcgtgggtgggtttgggttggatttggctaaacccaagacccgaaccatataagatactccggtttgggtgtggtaaaaagtccacccatt 43343092  T
Q  184 aaactattgggccggtttggataaacccactaattttcggattgg 228  Q
    | | || ||||  |||||||| |||||||||| ||| ||| ||||    
T  43343091 atattaatgggtgggtttggacaaacccactagtttccggtttgg 43343047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 111 - 230
Target Start/End: Complemental strand, 24221923 - 24221805
Alignment:
Q  111 tgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgttaaactattgggccggtttggataaacc 210  Q
    ||||||||| ||||||||||||| ||| || |||||||| ||||||||| ||||||||||||  |||| ||||| |||||||||  |||||||  |||||    
T  24221923 tgggtttggtcaaacccaaaacc-aaatcaaatagggtactccggtttgagtgaggtaaaataaccactcgttatactattgggtaggtttgggcaaacc 24221825  T
Q  211 cactaattttcggattgggt 230  Q
    |||||||||| || ||||||    
T  24221824 cactaatttttgggttgggt 24221805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 84 - 230
Target Start/End: Complemental strand, 26688528 - 26688384
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgtt 183  Q
    ||||||||| |||||   |||||| ||||| |||||||||| |||||  |||||||| ||||| || ||||||||| ||||||||||||  |||||||||    
T  26688528 taggggtgttcgtggatgggtttgagttggatttggccaaatccaaa--ctaaaccaaataggatactccggtttgagtgaggtaaaataaccacccgtt 26688431  T
Q  184 aaactattgggccggtttggataaacccactaattttcggattgggt 230  Q
    | |||||||||  |||||||  ||| ||||||||||| || ||||||    
T  26688430 atactattgggtgggtttgggcaaatccactaatttttgggttgggt 26688384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 111 - 230
Target Start/End: Original strand, 9958327 - 9958445
Alignment:
Q  111 tgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgttaaactattgggccggtttggataaacc 210  Q
    ||||||||||||||||||||||| |||||| |||||||  | |||||| |||||||||||||  ||||||||||  |||||||   |||||||| |||||    
T  9958327 tgggtttggccaaacccaaaacc-aaaccaaatagggttcttcggtttcggtgaggtaaaataaccacccgttattctattggataggtttggacaaacc 9958425  T
Q  211 cactaattttcggattgggt 230  Q
    |||||| ||| || ||||||    
T  9958426 cactaagttttgggttgggt 9958445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 87 - 131
Target Start/End: Original strand, 2208713 - 2208757
Alignment:
Q  87 gggtgtacgtgggccggtttgggttgggtttggccaaacccaaaa 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  2208713 gggtgtacgtgggccggtttgggttgggtttggccaaacccaaaa 2208757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 84 - 230
Target Start/End: Original strand, 35668083 - 35668227
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgtt 183  Q
    ||||||||| ||||||   |||||||||| ||||||||||||||||| |  | | || |||||||| ||| |||| |||||||||||||   |||  |||    
T  35668083 taggggtgttcgtgggtgtgtttgggttgagtttggccaaacccaaacc--agatcaaatagggtactccagtttaggtgaggtaaaataatcactggtt 35668180  T
Q  184 aaactattgggccggtttggataaacccactaattttcggattgggt 230  Q
    | |||||||||  |||||||| ||||||||||||||| || ||||||    
T  35668181 atactattgggtgggtttggacaaacccactaatttttgggttgggt 35668227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 84 - 191
Target Start/End: Original strand, 41477418 - 41477524
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgtt 183  Q
    ||||||||| ||||||  ||||||||||| ||||| |||||||| ||||  |||||| |||||||| |||| ||||||| |||||||||  |||||||||    
T  41477418 taggggtgttcgtgggtgggtttgggttgagtttgaccaaaccc-aaactcaaaccaaatagggtactccgatttgggtaaggtaaaataaccacccgtt 41477516  T
Q  184 aaactatt 191  Q
    | ||||||    
T  41477517 atactatt 41477524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 103 - 230
Target Start/End: Original strand, 30543637 - 30543762
Alignment:
Q  103 gtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgttaaactattgggccggtttg 202  Q
    ||||| |||| ||||||||||||| |||||| |||  | |||||||| |||||||||| |||||||||||  ||| |||||| |||||||||  ||||||    
T  30543637 gtttgagttgagtttggccaaacctaaaacc-aaattaaatagggtactccggtttggatgaggtaaaataaccatccgttatactattgggtgggtttg 30543735  T
Q  203 gataaacccactaattttcggattgggt 230  Q
    ||  |||||| ||||||| || ||||||    
T  30543736 gacgaaccca-taatttttgggttgggt 30543762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 86 - 180
Target Start/End: Complemental strand, 891072 - 890978
Alignment:
Q  86 ggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccaccc 180  Q
    ||||||||||||||   ||||| |||||||||||||||||| || ||   ||| ||||||  || | ||||||||||||||||||||||||||||    
T  891072 ggggtgtacgtgggtgagtttgagttgggtttggccaaacctaagactcgaactatatagaatacttcggtttgggtgaggtaaaatgtccaccc 890978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 298
Target Start/End: Complemental strand, 23185513 - 23185440
Alignment:
Q  225 ttgggtgaggtaaaatgtccacccgttaaactattgggccggtttggataaacccactaattttcggattgggt 298  Q
    ||||||||||||||||  ||||  |||| |||||||||| |||||||| ||||||||||||||| || ||||||    
T  23185513 ttgggtgaggtaaaataaccacatgttatactattgggcgggtttggacaaacccactaatttttgggttgggt 23185440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 135 - 221
Target Start/End: Complemental strand, 53153408 - 53153322
Alignment:
Q  135 aaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgttaaactattgggccggtttggataaacccactaattttc 221  Q
    ||||||||||||||| |||||||| |||||||||||||  |||  | ||  |||||| |  |||||||| |||||||||||||||||    
T  53153408 aaaccatatagggtactccggtttaggtgaggtaaaataaccattcattttactatttgatcggtttgggtaaacccactaattttc 53153322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 225 - 298
Target Start/End: Complemental strand, 16822188 - 16822116
Alignment:
Q  225 ttgggtgaggtaaaatgtccacccgttaaactattgggccggtttggataaacccactaattttcggattgggt 298  Q
    |||||||||| |||||  |||||||||| |||||||||  |||||||| ||||||||||||||| || ||||||    
T  16822188 ttgggtgagg-aaaataaccacccgttatactattgggtgggtttggacaaacccactaatttttgggttgggt 16822116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 219 - 296
Target Start/End: Complemental strand, 27925833 - 27925756
Alignment:
Q  219 ttcggattgggtgaggtaaaatgtccacccgttaaactattgggccggtttggataaacccactaattttcggattgg 296  Q
    ||||| |||||| || |||||| ||||||||||||| || ||||  |||||||| |||| ||||||||||||| ||||    
T  27925833 ttcggtttgggttagttaaaatatccacccgttaaattaatgggtgggtttggacaaactcactaattttcggtttgg 27925756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 225 - 296
Target Start/End: Complemental strand, 11818849 - 11818778
Alignment:
Q  225 ttgggtgaggtaaaatgtccacccgttaaactattgggccggtttggataaacccactaattttcggattgg 296  Q
    |||||||||||||| |   ||||||||| | |||||||  ||||||||||||||||||||||| ||| ||||    
T  11818849 ttgggtgaggtaaagtaatcacccgttacattattgggttggtttggataaacccactaatttccggtttgg 11818778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 111 - 177
Target Start/End: Complemental strand, 54578657 - 54578591
Alignment:
Q  111 tgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtcca 177  Q
    ||||||||  ||||||||| |||  ||| ||||||||||  ||||||||| ||||||||||||||||    
T  54578657 tgggtttgatcaaacccaagacccgaactatatagggtaccccggtttggatgaggtaaaatgtcca 54578591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 298
Target Start/End: Complemental strand, 24221874 - 24221805
Alignment:
Q  229 gtgaggtaaaatgtccacccgttaaactattgggccggtttggataaacccactaattttcggattgggt 298  Q
    ||||||||||||  |||| ||||| |||||||||  |||||||  ||||||||||||||| || ||||||    
T  24221874 gtgaggtaaaataaccactcgttatactattgggtaggtttgggcaaacccactaatttttgggttgggt 24221805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 298
Target Start/End: Complemental strand, 26688453 - 26688384
Alignment:
Q  229 gtgaggtaaaatgtccacccgttaaactattgggccggtttggataaacccactaattttcggattgggt 298  Q
    ||||||||||||  |||||||||| |||||||||  |||||||  ||| ||||||||||| || ||||||    
T  26688453 gtgaggtaaaataaccacccgttatactattgggtgggtttgggcaaatccactaatttttgggttgggt 26688384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 115; Significance: 3e-58; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 84 - 230
Target Start/End: Original strand, 15004147 - 15004293
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgtt 183  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  15004147 taggggtgtaagtgggccggtttgggttgggtttggccaaacccaaaacccaaaccatatagggtactccggtttgggtgaggtaaaatatccacccgtt 15004246  T
Q  184 aaactattgggccggtttggataaacccactaattttcggattgggt 230  Q
    |||||||||||| ||||||| ||||||||||||||| ||| ||||||    
T  15004247 aaactattgggctggtttgggtaaacccactaatttccgggttgggt 15004293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 84 - 219
Target Start/End: Complemental strand, 22343101 - 22342967
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgtt 183  Q
    |||||||||| |||| | |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  22343101 taggggtgtaagtggac-ggtttgggttgggtttggccaaacccaaaacccaaaccatatagggtactccggtttgggtgaggtaaaatatccacccgtt 22343003  T
Q  184 aaactattgggccggtttggataaacccactaattt 219  Q
    ||||||||||||| |||||| ||| |||||||||||    
T  22343002 aaactattgggccagtttgggtaagcccactaattt 22342967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 84 - 219
Target Start/End: Complemental strand, 22354761 - 22354627
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgtt 183  Q
    |||||||||| |||| | |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  22354761 taggggtgtaagtggac-ggtttgggttgggtttggccaaacccaaaacccaaaccatatagggtactccggtttgggtgaggtaaaatatccacccgtt 22354663  T
Q  184 aaactattgggccggtttggataaacccactaattt 219  Q
    ||||||||||||| |||||| ||| |||||||||||    
T  22354662 aaactattgggccagtttgggtaagcccactaattt 22354627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 84 - 230
Target Start/End: Complemental strand, 30233580 - 30233434
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgtt 183  Q
    |||||||||||||||| |||||||||||||||||| |||||||||| |||  ||||||| |||||| |||||||  |||||||||||||   || |||||    
T  30233580 taggggtgtacgtgggtcggtttgggttgggtttgaccaaacccaagacccgaaccatagagggtactccggttaaggtgaggtaaaataatcatccgtt 30233481  T
Q  184 aaactattgggccggtttggataaacccactaattttcggattgggt 230  Q
    | |||||||| ||||||||| ||||||||||||||||||| ||||||    
T  30233480 atactattggaccggtttgggtaaacccactaattttcggtttgggt 30233434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 84 - 230
Target Start/End: Complemental strand, 31628290 - 31628144
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgtt 183  Q
    |||||||||| ||||| || |||||||||||||| || |||||||| |||  ||||||||||| || ||| |||||||| ||||||||| ||||||||||    
T  31628290 taggggtgtaagtgggtcgatttgggttgggtttagctaaacccaagacccgaaccatataggatactccagtttgggttaggtaaaatatccacccgtt 31628191  T
Q  184 aaactattgggccggtttggataaacccactaattttcggattgggt 230  Q
    ||| || ||||  |||||||  |||||||||||||||||| ||||||    
T  31628190 aaattaatgggtgggtttgggcaaacccactaattttcggtttgggt 31628144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 225 - 298
Target Start/End: Original strand, 15004220 - 15004293
Alignment:
Q  225 ttgggtgaggtaaaatgtccacccgttaaactattgggccggtttggataaacccactaattttcggattgggt 298  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||| ||| ||||||    
T  15004220 ttgggtgaggtaaaatatccacccgttaaactattgggctggtttgggtaaacccactaatttccgggttgggt 15004293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 111 - 220
Target Start/End: Original strand, 39330537 - 39330645
Alignment:
Q  111 tgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgttaaactattgggccggtttggataaacc 210  Q
    ||||||||||||||||||||||| |||||| |||||||| |||| ||| | |||||||||||  ||||| |||| ||||||||   |||||||| |||||    
T  39330537 tgggtttggccaaacccaaaacc-aaaccaaatagggtactccgatttagatgaggtaaaataaccacctgttatactattggatgggtttggacaaacc 39330635  T
Q  211 cactaatttt 220  Q
    ||||||||||    
T  39330636 cactaatttt 39330645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 84 - 228
Target Start/End: Complemental strand, 232731 - 232587
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgtt 183  Q
    |||||||||||||||| || |||||||||||||||| |||| |||| |||  ||  |||||| ||| |||||||||||| |||| |||| ||||||||||    
T  232731 taggggtgtacgtgggtcgatttgggttgggtttggtcaaatccaagacccgaattatatagagtactccggtttgggttaggttaaatatccacccgtt 232632  T
Q  184 aaactattgggccggtttggataaacccactaattttcggattgg 228  Q
    ||| || ||||    |||||  |||||||||||||| ||| ||||    
T  232631 aaattaatgggtgcatttgggcaaacccactaatttccggtttgg 232587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 84 - 228
Target Start/End: Complemental strand, 709142 - 708998
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgtt 183  Q
    |||||||||||||||| || |||||||||||||||| |||| |||| |||  ||  |||||| ||| |||||||||||| |||| |||| ||||||||||    
T  709142 taggggtgtacgtgggtcgatttgggttgggtttggtcaaatccaagacccgaattatatagagtactccggtttgggttaggttaaatatccacccgtt 709043  T
Q  184 aaactattgggccggtttggataaacccactaattttcggattgg 228  Q
    ||| || ||||    |||||  |||||||||||||| ||| ||||    
T  709042 aaattaatgggtgcatttgggcaaacccactaatttccggtttgg 708998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 84 - 228
Target Start/End: Complemental strand, 746354 - 746210
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgtt 183  Q
    |||||||||||||||| || |||||||||||||||| |||| |||| |||  ||  |||||| ||| |||||||||||| |||| |||| ||||||||||    
T  746354 taggggtgtacgtgggtcgatttgggttgggtttggtcaaatccaagacccgaattatatagagtactccggtttgggttaggttaaatatccacccgtt 746255  T
Q  184 aaactattgggccggtttggataaacccactaattttcggattgg 228  Q
    ||| || ||||    |||||  |||||||||||||| ||| ||||    
T  746254 aaattaatgggtgcatttgggcaaacccactaatttccggtttgg 746210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 84 - 228
Target Start/End: Complemental strand, 870249 - 870105
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgtt 183  Q
    |||||||||||||||| || |||||||||||||||| |||| |||| |||  ||  |||||| ||| |||||||||||| |||| |||| ||||||||||    
T  870249 taggggtgtacgtgggtcgatttgggttgggtttggtcaaatccaagacccgaattatatagagtactccggtttgggttaggttaaatatccacccgtt 870150  T
Q  184 aaactattgggccggtttggataaacccactaattttcggattgg 228  Q
    ||| || ||||    |||||  |||||||||||||| ||| ||||    
T  870149 aaattaatgggtgcatttgggcaaacccactaatttccggtttgg 870105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 104 - 228
Target Start/End: Complemental strand, 33365722 - 33365598
Alignment:
Q  104 tttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgttaaactattgggccggtttgg 203  Q
    |||| ||| ||||||||||||||||| |||  |||||||||||||| |||||||||| | ||||||||| | ||||||||||| || ||||  |||||||    
T  33365722 tttgagttaggtttggccaaacccaagacccgaaccatatagggtactccggtttggattaggtaaaatattcacccgttaaattaatgggtgggtttgg 33365623  T
Q  204 ataaacccactaattttcggattgg 228  Q
      ||||| |||||||| ||| ||||    
T  33365622 gcaaacctactaatttccggtttgg 33365598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 87 - 186
Target Start/End: Complemental strand, 3309 - 3210
Alignment:
Q  87 gggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgttaaa 186  Q
    ||||||||||||| || |||| ||| ||||||||||||||||| |||  ||||||| |||||| || ||||||||| ||||||||| | |||||||||||    
T  3309 gggtgtacgtgggtcgatttgagttaggtttggccaaacccaagacccgaaccatacagggtactctggtttgggttaggtaaaatattcacccgttaaa 3210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 225 - 287
Target Start/End: Complemental strand, 22343029 - 22342967
Alignment:
Q  225 ttgggtgaggtaaaatgtccacccgttaaactattgggccggtttggataaacccactaattt 287  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||| ||| |||||||||||    
T  22343029 ttgggtgaggtaaaatatccacccgttaaactattgggccagtttgggtaagcccactaattt 22342967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 225 - 287
Target Start/End: Complemental strand, 22354689 - 22354627
Alignment:
Q  225 ttgggtgaggtaaaatgtccacccgttaaactattgggccggtttggataaacccactaattt 287  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||| ||| |||||||||||    
T  22354689 ttgggtgaggtaaaatatccacccgttaaactattgggccagtttgggtaagcccactaattt 22354627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 104 - 230
Target Start/End: Complemental strand, 24617461 - 24617336
Alignment:
Q  104 tttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgttaaactattgggccggtttgg 203  Q
    |||| ||||||||||||||||||||||||| |||||| |||||||| | ||||||||||||| ||||||  |||   |||| ||||||| |  |||||||    
T  24617461 tttgagttgggtttggccaaacccaaaacc-aaaccaaatagggtacttcggtttgggtgagataaaataaccatttgttatactattgagtgggtttgg 24617363  T
Q  204 ataaacccactaattttcggattgggt 230  Q
      ||||||||||||||| || ||||||    
T  24617362 gcaaacccactaatttttgggttgggt 24617336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 84 - 220
Target Start/End: Original strand, 13248028 - 13248163
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgtt 183  Q
    ||||||||| ||||||  ||||||| |||||||||| ||||||||||||| |||| | ||||| || ||||||| | |||| |||||||  ||  |||||    
T  13248028 taggggtgttcgtgggtgggtttggattgggtttggtcaaacccaaaacc-aaactaaataggatactccggttcgagtgaagtaaaataaccctccgtt 13248126  T
Q  184 aaactattgggccggtttggataaacccactaatttt 220  Q
    | |||||||||  |||||||| ||||||||| |||||    
T  13248127 atactattgggtgggtttggacaaacccacttatttt 13248163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 88 - 172
Target Start/End: Original strand, 41492399 - 41492483
Alignment:
Q  88 ggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaat 172  Q
    |||||| || || |||||||||||||| ||||||||||||||||||  ||| |||||| ||| |||||||| |||||||||||||    
T  41492399 ggtgtatgtaggtcggtttgggttggggttggccaaacccaaaacccgaactatatagtgtactccggtttaggtgaggtaaaat 41492483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 111 - 223
Target Start/End: Original strand, 37780863 - 37780975
Alignment:
Q  111 tgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgttaaactattgggccggtttggataaacc 210  Q
    ||||||||| ||||||||| |||  ||||||||||| || |||| |||||||||||||||| |  ||||||||| | || ||||  |||||||| |||||    
T  37780863 tgggtttgggcaaacccaagacccgaaccatataggatactccgatttgggtgaggtaaaacgctcacccgttatattaatgggtgggtttggacaaacc 37780962  T
Q  211 cactaattttcgg 223  Q
    || || |||||||    
T  37780963 cattagttttcgg 37780975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 228 - 298
Target Start/End: Complemental strand, 30233504 - 30233434
Alignment:
Q  228 ggtgaggtaaaatgtccacccgttaaactattgggccggtttggataaacccactaattttcggattgggt 298  Q
    |||||||||||||   || |||||| |||||||| ||||||||| ||||||||||||||||||| ||||||    
T  30233504 ggtgaggtaaaataatcatccgttatactattggaccggtttgggtaaacccactaattttcggtttgggt 30233434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 298
Target Start/End: Complemental strand, 31628217 - 31628144
Alignment:
Q  225 ttgggtgaggtaaaatgtccacccgttaaactattgggccggtttggataaacccactaattttcggattgggt 298  Q
    |||||| ||||||||| ||||||||||||| || ||||  |||||||  |||||||||||||||||| ||||||    
T  31628217 ttgggttaggtaaaatatccacccgttaaattaatgggtgggtttgggcaaacccactaattttcggtttgggt 31628144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 184
Target Start/End: Original strand, 39918566 - 39918667
Alignment:
Q  83 ataggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgt 182  Q
    |||||||| | ||||||  |||||| ||||||||||| |||| ||||||||  ||| ||||||| || |  |||||||||||||||||| | ||||||||    
T  39918566 ataggggttttcgtgggtgggtttgagttgggtttggtcaaatccaaaacccgaactatataggatactttggtttgggtgaggtaaaacgcccacccgt 39918665  T
Q  183 ta 184  Q
    ||    
T  39918666 ta 39918667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 228
Target Start/End: Original strand, 27822587 - 27822675
Alignment:
Q  140 atatagggtattccggtttgggtgaggtaaaatgtccacccgttaaactattgggccggtttggataaacccactaattttcggattgg 228  Q
    |||||||||| | | |||||| |||| |||||||||||||| ||| | || ||||  |||||||| |||||||||| ||||||| ||||    
T  27822587 atatagggtacttcagtttggttgagataaaatgtccacccattatattaatgggtgggtttggacaaacccactagttttcggtttgg 27822675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 84 - 215
Target Start/End: Complemental strand, 37675461 - 37675331
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgtt 183  Q
    ||||||||| ||||||  |||||||  ||| ||||||||||||||| |||  ||||||||||| || ||| |||||| | || ||||| || ||||||||    
T  37675461 taggggtgttcgtgggtgggtttggactggttttggccaaacccaagacccgaaccatataggatactccagtttggataagataaaacgt-cacccgtt 37675363  T
Q  184 aaactattgggccggtttggataaacccacta 215  Q
    | | || ||||  |||||||  ||||||||||    
T  37675362 atattaatgggtgggtttgggcaaacccacta 37675331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 219
Target Start/End: Original strand, 21467805 - 21467921
Alignment:
Q  103 gtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgttaaactattgggccggtttg 202  Q
    |||| |||||||||| |||||||  || || | || |||||||  || ||| |||||| ||||| |||||  |||||||||| |||||| |   ||||||    
T  21467805 gttttggttgggtttagccaaacttaagacttgaatcatatagaatactccagtttggatgaggaaaaataaccacccgttacactatttgattggtttg 21467904  T
Q  203 gataaacccactaattt 219  Q
    || ||||||||||||||    
T  21467905 gacaaacccactaattt 21467921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 109; Significance: 1e-54; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 84 - 228
Target Start/End: Original strand, 44269769 - 44269913
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgtt 183  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||| |||||||||||||||||    
T  44269769 taggggtgtaagtgggccggtttgggttgggtttggccaaacccaaaacccaaaccatataaggtactccggtttgggtgagataaaatgtccacccgtt 44269868  T
Q  184 aaactattgggccggtttggataaacccactaattttcggattgg 228  Q
    |||||||||| ||||||||| ||||||||||||||| ||| ||||    
T  44269869 aaactattggaccggtttgggtaaacccactaatttccgggttgg 44269913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 84 - 228
Target Start/End: Complemental strand, 1672721 - 1672577
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgtt 183  Q
    |||||||||| |||||||||||| ||||||||||||||||| |||||||| |||||||||| |||| ||||||||||||||| ||||||||||| |||||    
T  1672721 taggggtgtaagtgggccggtttaggttgggtttggccaaatccaaaacccaaaccatataaggtactccggtttgggtgagataaaatgtccatccgtt 1672622  T
Q  184 aaactattgggccggtttggataaacccactaattttcggattgg 228  Q
    |||||||||||||||||||| ||||||||||||||| ||| ||||    
T  1672621 aaactattgggccggtttgggtaaacccactaatttccgggttgg 1672577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 84 - 228
Target Start/End: Original strand, 48432529 - 48432673
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgtt 183  Q
    |||||||||| ||||| || |||||||||||||||||||||||||| |||  ||||||||||| || |||||||||||| ||||||||| ||||||||||    
T  48432529 taggggtgtaagtgggtcgatttgggttgggtttggccaaacccaagacccgaaccatataggatactccggtttgggttaggtaaaatatccacccgtt 48432628  T
Q  184 aaactattgggccggtttggataaacccactaattttcggattgg 228  Q
    ||| || ||||  |||||||  |||||||||||||| ||| ||||    
T  48432629 aaattaatgggtgggtttgggcaaacccactaatttccggtttgg 48432673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 84 - 214
Target Start/End: Complemental strand, 52965895 - 52965766
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgtt 183  Q
    ||||||||| ||||||  |||||||||||||||||||||||||||||||| |||||| |||||||| |||| |||||||||||||||||  ||||||| |    
T  52965895 taggggtgttcgtgggtgggtttgggttgggtttggccaaacccaaaacc-aaaccaaatagggtactccgatttgggtgaggtaaaatacccacccgat 52965797  T
Q  184 aaactattgggccggtttggataaacccact 214  Q
    | |||||||||  |||||||| |||||||||    
T  52965796 atactattgggtgggtttggacaaacccact 52965766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 84 - 228
Target Start/End: Original strand, 4773822 - 4773966
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgtt 183  Q
    |||||||||| |||||  | ||||||||||||||||||||||||||  ||  |||||||||||||| |||||||||||| ||||||||| ||||||||||    
T  4773822 taggggtgtaagtgggttgatttgggttgggtttggccaaacccaaggcccgaaccatatagggtactccggtttgggttaggtaaaatatccacccgtt 4773921  T
Q  184 aaactattgggccggtttggataaacccactaattttcggattgg 228  Q
    ||| || ||||  |||||||  |||||||||||||| ||| ||||    
T  4773922 aaattaatgggtgggtttgggcaaacccactaatttccggtttgg 4773966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 84 - 228
Target Start/End: Original strand, 45222324 - 45222468
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgtt 183  Q
    ||||||||||||||||  ||||||||||||||||| |||||||||| |||  ||||||||||||||  ||||||||||||||||||||||||||||| ||    
T  45222324 taggggtgtacgtgggtgggtttgggttgggtttgaccaaacccaagacccgaaccatatagggtaccccggtttgggtgaggtaaaatgtccacccatt 45222423  T
Q  184 aaactattgggccggtttggataaacccactaattttcggattgg 228  Q
    | | || |||   |||||||  |||||||||| ||||||| ||||    
T  45222424 atattaatggatgggtttgggaaaacccactagttttcggtttgg 45222468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 84 - 228
Target Start/End: Original strand, 39084723 - 39084867
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgtt 183  Q
    |||||||||| |||||  | |||||||||||||||||||||||||| |||  ||| |||||||||| |||||||||||| ||||||||| ||||||||||    
T  39084723 taggggtgtaagtgggttgatttgggttgggtttggccaaacccaagaccctaactatatagggtactccggtttgggttaggtaaaatatccacccgtt 39084822  T
Q  184 aaactattgggccggtttggataaacccactaattttcggattgg 228  Q
    ||| || |||   |||||||  |||||||||||||| ||| ||||    
T  39084823 aaattaatggatgggtttgggcaaacccactaatttccggtttgg 39084867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 86 - 172
Target Start/End: Original strand, 8262529 - 8262615
Alignment:
Q  86 ggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaat 172  Q
    |||||||||||||||  |||||||||||||||||||||||||| |||||||||||||||||||  ||| ||||||||||||||||||    
T  8262529 ggggtgtacgtgggctagtttgggttgggtttggccaaacccagaacctaaaccatatagggtgctccagtttgggtgaggtaaaat 8262615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 84 - 219
Target Start/End: Original strand, 12025562 - 12025697
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgtt 183  Q
    |||||||||| |||||  ||||||||||||||||  | |||||||| |||  |||||||||||||| |||||||||||| | ||||||| | ||||||||    
T  12025562 taggggtgtaagtgggttggtttgggttgggttttacaaaacccaagacccgaaccatatagggtactccggtttgggttaagtaaaatatacacccgtt 12025661  T
Q  184 aaactattgggccggtttggataaacccactaattt 219  Q
    ||| || ||||  |||||||  ||||||||||||||    
T  12025662 aaattaatgggtgggtttgggcaaacccactaattt 12025697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 225 - 296
Target Start/End: Complemental strand, 1672648 - 1672577
Alignment:
Q  225 ttgggtgaggtaaaatgtccacccgttaaactattgggccggtttggataaacccactaattttcggattgg 296  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||| ||||    
T  1672648 ttgggtgagataaaatgtccatccgttaaactattgggccggtttgggtaaacccactaatttccgggttgg 1672577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 225 - 296
Target Start/End: Original strand, 44269842 - 44269913
Alignment:
Q  225 ttgggtgaggtaaaatgtccacccgttaaactattgggccggtttggataaacccactaattttcggattgg 296  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||| ||||    
T  44269842 ttgggtgagataaaatgtccacccgttaaactattggaccggtttgggtaaacccactaatttccgggttgg 44269913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 92 - 172
Target Start/End: Original strand, 40949035 - 40949115
Alignment:
Q  92 tacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaat 172  Q
    |||||||| ||||||| |||||||||||||||| |||| ||| |||||||||||| || | || |||||||||||||||||    
T  40949035 tacgtgggtcggtttgagttgggtttggccaaatccaagacccaaaccatataggatacttcgatttgggtgaggtaaaat 40949115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 87 - 214
Target Start/End: Complemental strand, 15042768 - 15042642
Alignment:
Q  87 gggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgttaaa 186  Q
    |||||||| ||||| |||||||||||| |||||||  |||||| ||| || ||||||||| || ||  |||| |||||||||||||  ||| || ||| |    
T  15042768 gggtgtacatgggctggtttgggttggatttggccttacccaagacccaatccatataggatactctagttt-ggtgaggtaaaataaccatccattaca 15042670  T
Q  187 ctattgggccggtttggataaacccact 214  Q
    |||||| ||||||||||  |||||||||    
T  15042669 ctattgagccggtttgggcaaacccact 15042642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 84 - 192
Target Start/End: Original strand, 39069141 - 39069248
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgtt 183  Q
    ||||||||| ||| ||  ||||| ||||| ||||||||||||| |||||| |||| | |||||||| | ||||||||||||||||| ||  |||| ||||    
T  39069141 taggggtgttcgtaggtgggtttaggttgagtttggccaaacctaaaacc-aaactaaatagggtacttcggtttgggtgaggtaagataaccactcgtt 39069239  T
Q  184 aaactattg 192  Q
    | |||||||    
T  39069240 atactattg 39069248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 111 - 230
Target Start/End: Complemental strand, 46552342 - 46552224
Alignment:
Q  111 tgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgttaaactattgggccggtttggataaacc 210  Q
    ||||||||| ||||||||||||| ||| || ||| |||| || ||||||||| |||||||||  ||| || ||| || ||||||  |||||||| |||||    
T  46552342 tgggtttggtcaaacccaaaacc-aaatcaaataaggtactctggtttgggtaaggtaaaataaccatccattataccattgggtgggtttggacaaacc 46552244  T
Q  211 cactaattttcggattgggt 230  Q
     ||||||||| || ||||||    
T  46552243 aactaatttttgggttgggt 46552224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 148
Target Start/End: Complemental strand, 7841033 - 7840988
Alignment:
Q  102 ggtttgggttgggtttggccaaacccaaaacctaaaccatatagggt 148  Q
    |||||||||||||||||||||||||||||||| |||||| |||||||    
T  7841033 ggtttgggttgggtttggccaaacccaaaacc-aaaccaaatagggt 7840988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 225 - 296
Target Start/End: Original strand, 4773895 - 4773966
Alignment:
Q  225 ttgggtgaggtaaaatgtccacccgttaaactattgggccggtttggataaacccactaattttcggattgg 296  Q
    |||||| ||||||||| ||||||||||||| || ||||  |||||||  |||||||||||||| ||| ||||    
T  4773895 ttgggttaggtaaaatatccacccgttaaattaatgggtgggtttgggcaaacccactaatttccggtttgg 4773966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 225 - 296
Target Start/End: Original strand, 48432602 - 48432673
Alignment:
Q  225 ttgggtgaggtaaaatgtccacccgttaaactattgggccggtttggataaacccactaattttcggattgg 296  Q
    |||||| ||||||||| ||||||||||||| || ||||  |||||||  |||||||||||||| ||| ||||    
T  48432602 ttgggttaggtaaaatatccacccgttaaattaatgggtgggtttgggcaaacccactaatttccggtttgg 48432673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 282
Target Start/End: Complemental strand, 52965823 - 52965766
Alignment:
Q  225 ttgggtgaggtaaaatgtccacccgttaaactattgggccggtttggataaacccact 282  Q
    ||||||||||||||||  ||||||| || |||||||||  |||||||| |||||||||    
T  52965823 ttgggtgaggtaaaatacccacccgatatactattgggtgggtttggacaaacccact 52965766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 154
Target Start/End: Original strand, 31108707 - 31108759
Alignment:
Q  102 ggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccg 154  Q
    |||| ||||||||||||||||||| ||| |||| ||||||||| |||| ||||    
T  31108707 ggttggggttgggtttggccaaactcaagacctgaaccatataaggtactccg 31108759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 122 - 230
Target Start/End: Complemental strand, 41237325 - 41237218
Alignment:
Q  122 aaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgttaaactattgggccggtttggataaacccactaattttc 221  Q
    |||||||||||| ||| || |||||||| | || |||||||||||||||||  ||||  || | |||||||||  |||||||  || ||||||||||||     
T  41237325 aaacccaaaacc-aaatcaaatagggtacttcgatttgggtgaggtaaaataaccacttgtcatactattgggtgggtttgggcaatcccactaattttt 41237227  T
Q  222 ggattgggt 230  Q
    || ||||||    
T  41237226 gggttgggt 41237218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 3e-36; HSPs: 42)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 83 - 228
Target Start/End: Original strand, 31199928 - 31200073
Alignment:
Q  83 ataggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgt 182  Q
    ||||||||||||||||| || |||||||||||||| ||||||||||| |||  ||||||||| ||||||||||||||||| ||||||||| |||||||||    
T  31199928 ataggggtgtacgtgggtcgatttgggttgggtttagccaaacccaagacccgaaccatataaggtattccggtttgggttaggtaaaatatccacccgt 31200027  T
Q  183 taaactattgggccggtttggataaacccactaattttcggattgg 228  Q
    || | || ||||  |||||||| |||||||||||||| ||| ||||    
T  31200028 tagattaatgggtgggtttggacaaacccactaatttccggtttgg 31200073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 84 - 219
Target Start/End: Complemental strand, 8059759 - 8059624
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgtt 183  Q
    |||||||||  ||||| || |||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||| ||||||||| ||||||||||    
T  8059759 taggggtgtgagtgggtcgatttgggttgggtttggccaaacccaagacccaaaccatatagggtactccggtttgggttaggtaaaatatccacccgtt 8059660  T
Q  184 aaactattgggccggtttggataaacccactaattt 219  Q
    ||| || ||||  |||||||  ||||||||||||||    
T  8059659 aaattaatgggtgggtttgggcaaacccactaattt 8059624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 84 - 219
Target Start/End: Complemental strand, 50050505 - 50050370
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgtt 183  Q
    |||||||||||||||  || |||||||||||||||||||||||||| |||  ||||||||||| ||||||||||||||| ||||||||| ||||||||||    
T  50050505 taggggtgtacgtggatcgatttgggttgggtttggccaaacccaagacccgaaccatataggatattccggtttgggttaggtaaaatatccacccgtt 50050406  T
Q  184 aaactattgggccggtttggataaacccactaattt 219  Q
    ||| || ||||   ||||||| ||||||||||||||    
T  50050405 aaattaatgggtgagtttggacaaacccactaattt 50050370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 84 - 228
Target Start/End: Complemental strand, 21969470 - 21969326
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgtt 183  Q
    |||||||||| |||||  | |||||||||||||||||||||||||| |||  |||||||||||||| |||||||||||| ||||||||| ||||||||||    
T  21969470 taggggtgtaagtgggttgatttgggttgggtttggccaaacccaagacccgaaccatatagggtactccggtttgggttaggtaaaatatccacccgtt 21969371  T
Q  184 aaactattgggccggtttggataaacccactaattttcggattgg 228  Q
    ||| || ||||  |||||||  ||| |||||||||||||| ||||    
T  21969370 aaattaatgggtgggtttgggcaaatccactaattttcggtttgg 21969326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 84 - 230
Target Start/End: Original strand, 32829340 - 32829484
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgtt 183  Q
    ||||||||| ||||||  |||||||||||||||||||||||||||||||| |||||| ||||| || ||||||||||||||||||||||  |||| ||||    
T  32829340 taggggtgttcgtgggt-ggtttgggttgggtttggccaaacccaaaacc-aaaccaaataggctactccggtttgggtgaggtaaaataaccactcgtt 32829437  T
Q  184 aaactattgggccggtttggataaacccactaattttcggattgggt 230  Q
    | |||||||||  |||||||| ||| ||||||||||| || ||||||    
T  32829438 atactattgggtgggtttggacaaatccactaatttttgggttgggt 32829484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 84 - 228
Target Start/End: Complemental strand, 40710300 - 40710156
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgtt 183  Q
    |||||||||| ||||| || ||||||||||||||||| |||||||| |||  |||||||||  |||||| ||||||||| ||||||||| ||||||||||    
T  40710300 taggggtgtaagtgggtcgatttgggttgggtttggctaaacccaagacccgaaccatatacagtattctggtttgggttaggtaaaatatccacccgtt 40710201  T
Q  184 aaactattgggccggtttggataaacccactaattttcggattgg 228  Q
    ||| || ||||  |||||||  |||||||||||||||||| ||||    
T  40710200 aaattaatgggtgggtttgggcaaacccactaattttcggtttgg 40710156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 84 - 228
Target Start/End: Complemental strand, 14796166 - 14796022
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgtt 183  Q
    |||||||||| |||||  | |||||||||||||||| ||||||||| |||  ||| |||||||||| |||||||||||| ||||||||| ||||||||||    
T  14796166 taggggtgtaagtgggttgatttgggttgggtttggtcaaacccaagacccgaactatatagggtactccggtttgggttaggtaaaatatccacccgtt 14796067  T
Q  184 aaactattgggccggtttggataaacccactaattttcggattgg 228  Q
    ||| || ||||  |||||||  |||||||||||||| ||| ||||    
T  14796066 aaattaatgggtgggtttgggcaaacccactaatttccggtttgg 14796022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 84 - 228
Target Start/End: Complemental strand, 14805040 - 14804896
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgtt 183  Q
    |||||||||| |||||  | |||||||||||||||| |||||||||  ||  ||| |||||||||| |||||||||||| ||||||||| ||||||||||    
T  14805040 taggggtgtaagtgggttgatttgggttgggtttggtcaaacccaagtcccgaactatatagggtactccggtttgggttaggtaaaatatccacccgtt 14804941  T
Q  184 aaactattgggccggtttggataaacccactaattttcggattgg 228  Q
    ||| || ||||  |||||||  |||||||||||||| ||| ||||    
T  14804940 aaattaatgggtgggtttgggcaaacccactaatttccggtttgg 14804896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 314 - 410
Target Start/End: Complemental strand, 20025625 - 20025537
Alignment:
Q  314 ccctctgtcgcataatcggggcctgctccacaaagtaccattacaaatttacacgacacagtctcgtgtatccatcatgcatcttattcacaagtat 410  Q
    |||||||||||||||||||||||||||||||||||||||||        ||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  20025625 ccctctgtcgcataatcggggcctgctccacaaagtaccat--------tacacgacacagtctagtgtatccatcatgcatctgattcacaagtat 20025537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 84 - 230
Target Start/End: Complemental strand, 1246993 - 1246848
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgtt 183  Q
    ||||||||| ||||||  |||||||||||||||||||||||||||| ||| |||||| |||| ||| | |||||| |||||| ||||||  |||||||||    
T  1246993 taggggtgttcgtgggtaggtttgggttgggtttggccaaacccaagacc-aaaccaaatagtgtacttcggtttaggtgagataaaataaccacccgtt 1246895  T
Q  184 aaactattgggccggtttggataaacccactaattttcggattgggt 230  Q
    | |||||||||  | |||||  ||||||||||||||| || ||||||    
T  1246894 atactattgggtggatttgggcaaacccactaatttttgggttgggt 1246848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 104 - 228
Target Start/End: Original strand, 19584433 - 19584557
Alignment:
Q  104 tttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgttaaactattgggccggtttgg 203  Q
    |||||||||||||||| ||||||||| | |  |||||||||||||| |||||||||||| ||||||||| ||||||||||||| || || |  |||||||    
T  19584433 tttgggttgggtttggtcaaacccaagatccgaaccatatagggtactccggtttgggttaggtaaaatatccacccgttaaattaatgagtgggtttgg 19584532  T
Q  204 ataaacccactaattttcggattgg 228  Q
      |||||||||||||| ||| ||||    
T  19584533 gcaaacccactaatttccggtttgg 19584557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 84 - 172
Target Start/End: Original strand, 43312701 - 43312789
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaat 172  Q
    |||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||  ||||| || |||| ||||||||||||    
T  43312701 taggggtgtacgtgagtcggtttgggttgggtttggtcaaacccaaaacctaaaccatataaagtatttcgatttgagtgaggtaaaat 43312789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 84 - 228
Target Start/End: Original strand, 51250613 - 51250757
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgtt 183  Q
    |||||||||| |||||  | |||||||||||||||||||||||||| |||  |||||||||||||| |||| ||||||| ||||||||| | || |||||    
T  51250613 taggggtgtaagtgggttgatttgggttgggtttggccaaacccaagacccgaaccatatagggtactccgatttgggttaggtaaaatattcatccgtt 51250712  T
Q  184 aaactattgggccggtttggataaacccactaattttcggattgg 228  Q
    ||| || ||||   |||| |  |||||||||||||||||| ||||    
T  51250713 aaattaatgggtgagtttaggcaaacccactaattttcggtttgg 51250757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 84 - 230
Target Start/End: Original strand, 7145495 - 7145640
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgtt 183  Q
    ||||||||| ||||||  ||||||||||| |||||||||||||||| ||| |||||| |||| ||| | |||||| |||||| ||||||  |||||||||    
T  7145495 taggggtgttcgtgggtgggtttgggttgagtttggccaaacccaagacc-aaaccaaatagtgtacttcggtttaggtgagataaaataaccacccgtt 7145593  T
Q  184 aaactattgggccggtttggataaacccactaattttcggattgggt 230  Q
    | |||||||||  | |||||  ||||||||||||||| || ||||||    
T  7145594 atactattgggtggatttgggcaaacccactaatttttgggttgggt 7145640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 91 - 172
Target Start/End: Original strand, 26262185 - 26262266
Alignment:
Q  91 gtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaat 172  Q
    ||||||||| ||||||||||||||||||||| ||||||||||  |||||||||| |||| || |||||||||||||||||||    
T  26262185 gtacgtgggtcggtttgggttgggtttggcccaacccaaaactcaaaccatataaggtactctggtttgggtgaggtaaaat 26262266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 84 - 178
Target Start/End: Original strand, 29030387 - 29030481
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccac 178  Q
    |||||||||||||||| || ||||| ||| |||||||||||||||| |||| ||||||||| |||| |  | |||||||||||||||||||||||    
T  29030387 taggggtgtacgtgggtcgatttggattgagtttggccaaacccaagacctgaaccatataaggtactttgatttgggtgaggtaaaatgtccac 29030481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 104 - 184
Target Start/End: Complemental strand, 38036624 - 38036544
Alignment:
Q  104 tttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgtta 184  Q
    ||||||||||||||||||||||| || ||| |||||||||||| || | ||||||||||||||||||| ||||||| ||||    
T  38036624 tttgggttgggtttggccaaacctaagacccaaaccatataggatacttcggtttgggtgaggtaaaacgtccacctgtta 38036544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 84 - 230
Target Start/End: Original strand, 28250893 - 28251038
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgtt 183  Q
    ||||||||| ||||||  |||||  |||||||||||||||| |||||||| |||  | ||| | || | || |||||||||||||||||  |||||||||    
T  28250893 taggggtgtgcgtgggtgggtttaagttgggtttggccaaatccaaaacc-aaattaaataagatacttcgatttgggtgaggtaaaataaccacccgtt 28250991  T
Q  184 aaactattgggccggtttggataaacccactaattttcggattgggt 230  Q
    | |||||||||  |||||||  |||||| |||||||| || ||||||    
T  28250992 atactattgggtgggtttgggcaaaccctctaatttttgggttgggt 28251038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 89 - 194
Target Start/End: Complemental strand, 17190156 - 17190051
Alignment:
Q  89 gtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgttaaact 188  Q
    ||||||||||| |||||||||||||||||| ||||||| ||||||  || |||||| |||| || | |||||| ||||| ||||  |||||||||| ||     
T  17190156 gtgtacgtgggtcggtttgggttgggtttgaccaaacctaaaacccgaatcatataaggtactcggatttgggagaggtgaaataaccacccgttatacc 17190057  T
Q  189 attggg 194  Q
    ||||||    
T  17190056 attggg 17190051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 84 - 172
Target Start/End: Complemental strand, 31964385 - 31964296
Alignment:
Q  84 taggggtgtacgtgggc-cggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaat 172  Q
    ||||||||||||| ||  ||||||| |||| ||||| |||||||||||||   |||||||||||||| ||||||||| ||||||||||||    
T  31964385 taggggtgtacgtaggttcggtttgagttgtgtttgaccaaacccaaaactcgaaccatatagggtactccggtttgagtgaggtaaaat 31964296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 84 - 228
Target Start/End: Complemental strand, 39331333 - 39331189
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgtt 183  Q
    ||||||||| ||||||  |||||||  ||||||| | ||||||||| | || ||| ||||| | || || |||||||||||||||||| ||||| |||||    
T  39331333 taggggtgttcgtgggtgggtttggactgggttttgtcaaacccaagatctgaactatatatgatactctggtttgggtgaggtaaaacgtccatccgtt 39331234  T
Q  184 aaactattgggccggtttggataaacccactaattttcggattgg 228  Q
    | | || |||   |||||||| |||||||||| ||||||| ||||    
T  39331233 atattaatggttgggtttggacaaacccactagttttcggtttgg 39331189  T

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Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 84 - 230
Target Start/End: Original strand, 42666621 - 42666765
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgtt 183  Q
    ||||||||| ||||||  ||||||||||||||||| | |||||||||||| |||| | | | |||  | || |||||||||||||||||  ||| |||||    
T  42666621 taggggtgttcgtgggtgggtttgggttgggtttgactaaacccaaaacc-aaactaaagatggtgcttcgatttgggtgaggtaaaataacca-ccgtt 42666718  T
Q  184 aaactattgggccggtttggataaacccactaattttcggattgggt 230  Q
    | | ||||||   |||||||| ||||||||||||||| || ||||||    
T  42666719 ataatattggatgggtttggacaaacccactaatttttgggttgggt 42666765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 84 - 184
Target Start/End: Complemental strand, 14940146 - 14940047
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgtt 183  Q
    ||||||||| ||||||  |||||| ||||  ||||||||||| ||||||| |||||| ||| |||| | |||||||||||| |||||||  |||||||||    
T  14940146 taggggtgttcgtgggtgggtttgagttgattttggccaaactcaaaacc-aaaccaaatacggtacttcggtttgggtgaagtaaaataaccacccgtt 14940048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 84 - 184
Target Start/End: Complemental strand, 14950153 - 14950054
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgtt 183  Q
    ||||||||| ||||||  |||||| ||||  ||||||||||| ||||||| |||||| ||| |||| | |||||||||||| |||||||  |||||||||    
T  14950153 taggggtgttcgtgggtgggtttgagttgattttggccaaactcaaaacc-aaaccaaatacggtacttcggtttgggtgaagtaaaataaccacccgtt 14950055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 84 - 184
Target Start/End: Complemental strand, 14954394 - 14954295
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgtt 183  Q
    ||||||||| ||||||  |||||| ||||  ||||||||||| ||||||| |||||| ||| |||| | |||||||||||| |||||||  |||||||||    
T  14954394 taggggtgttcgtgggtgggtttgagttgattttggccaaactcaaaacc-aaaccaaatacggtacttcggtttgggtgaagtaaaataaccacccgtt 14954296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 225 - 296
Target Start/End: Complemental strand, 40710227 - 40710156
Alignment:
Q  225 ttgggtgaggtaaaatgtccacccgttaaactattgggccggtttggataaacccactaattttcggattgg 296  Q
    |||||| ||||||||| ||||||||||||| || ||||  |||||||  |||||||||||||||||| ||||    
T  40710227 ttgggttaggtaaaatatccacccgttaaattaatgggtgggtttgggcaaacccactaattttcggtttgg 40710156  T

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Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 225 - 298
Target Start/End: Original strand, 28250965 - 28251038
Alignment:
Q  225 ttgggtgaggtaaaatgtccacccgttaaactattgggccggtttggataaacccactaattttcggattgggt 298  Q
    ||||||||||||||||  |||||||||| |||||||||  |||||||  |||||| |||||||| || ||||||    
T  28250965 ttgggtgaggtaaaataaccacccgttatactattgggtgggtttgggcaaaccctctaatttttgggttgggt 28251038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 225 - 298
Target Start/End: Original strand, 32829411 - 32829484
Alignment:
Q  225 ttgggtgaggtaaaatgtccacccgttaaactattgggccggtttggataaacccactaattttcggattgggt 298  Q
    ||||||||||||||||  |||| ||||| |||||||||  |||||||| ||| ||||||||||| || ||||||    
T  32829411 ttgggtgaggtaaaataaccactcgttatactattgggtgggtttggacaaatccactaatttttgggttgggt 32829484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 172
Target Start/End: Original strand, 5290564 - 5290650
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaat 172  Q
    |||| ||||| ||| | ||||||| |||||||||| |||||||||||| || ||||||||| |||| |||  |||||||||||||||||    
T  5290564 taggtgtgtatgtgagtcggtttgagttgggtttgaccaaacccaaaa-ctgaaccatata-ggtactccaatttgggtgaggtaaaat 5290650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 219
Target Start/End: Complemental strand, 24253333 - 24253218
Alignment:
Q  103 gtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgttaaactattgggccggtttg 202  Q
    |||||| ||||||||||||||||| ||||  ||||||| |||||||| |||  ||||||| |||||||||   ||| ||| |   ||||||  |||||||    
T  24253333 gtttggattgggtttggccaaacctaaaa-ttaaaccaaatagggtactccaatttgggtaaggtaaaataatcactcgtaatgatattggatcggtttg 24253235  T
Q  203 gataaacccactaattt 219  Q
    || ||||||||||||||    
T  24253234 gacaaacccactaattt 24253218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 84 - 179
Target Start/End: Original strand, 220493 - 220588
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacc 179  Q
    |||||||| |||||||  |||||||| |||||||| | |||||||| | |  || ||||| || || |||||||| ||||||||||||| ||||||    
T  220493 taggggtgcacgtgggtgggtttgggctgggtttgactaaacccaagatccgaatcatatgggatactccggtttaggtgaggtaaaatatccacc 220588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 225 - 296
Target Start/End: Complemental strand, 14796093 - 14796022
Alignment:
Q  225 ttgggtgaggtaaaatgtccacccgttaaactattgggccggtttggataaacccactaattttcggattgg 296  Q
    |||||| ||||||||| ||||||||||||| || ||||  |||||||  |||||||||||||| ||| ||||    
T  14796093 ttgggttaggtaaaatatccacccgttaaattaatgggtgggtttgggcaaacccactaatttccggtttgg 14796022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 225 - 296
Target Start/End: Complemental strand, 14804967 - 14804896
Alignment:
Q  225 ttgggtgaggtaaaatgtccacccgttaaactattgggccggtttggataaacccactaattttcggattgg 296  Q
    |||||| ||||||||| ||||||||||||| || ||||  |||||||  |||||||||||||| ||| ||||    
T  14804967 ttgggttaggtaaaatatccacccgttaaattaatgggtgggtttgggcaaacccactaatttccggtttgg 14804896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 225 - 296
Target Start/End: Complemental strand, 21969397 - 21969326
Alignment:
Q  225 ttgggtgaggtaaaatgtccacccgttaaactattgggccggtttggataaacccactaattttcggattgg 296  Q
    |||||| ||||||||| ||||||||||||| || ||||  |||||||  ||| |||||||||||||| ||||    
T  21969397 ttgggttaggtaaaatatccacccgttaaattaatgggtgggtttgggcaaatccactaattttcggtttgg 21969326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 126 - 217
Target Start/End: Original strand, 28881931 - 28882020
Alignment:
Q  126 ccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgttaaactattgggccggtttggataaacccactaat 217  Q
    |||||||| |||||| ||||| || ||||||||||||||||||||||   |||||| || |||||||||  |||||||  ||||||||||||    
T  28881931 ccaaaacc-aaaccaaataggatactccggtttgggtgaggtaaaataatcacccg-tatactattgggtgggtttgggcaaacccactaat 28882020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 84 - 219
Target Start/End: Original strand, 30806348 - 30806482
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgtt 183  Q
    |||||||||||||||| ||||||||| || |||| ||| ||||||| |||| |||||||||   || | | |||||| |||| ||||||  ||||  |||    
T  30806348 taggggtgtacgtgggtcggtttgggctgagttt-gcccaacccaagacctgaaccatatataatacttcagtttggatgagataaaataaccacatgtt 30806446  T
Q  184 aaactattgggccggtttggataaacccactaattt 219  Q
    | |||||||| ||| |||||  ||| ||||||||||    
T  30806447 atactattggaccgatttggggaaatccactaattt 30806482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 225 - 296
Target Start/End: Original strand, 31200002 - 31200073
Alignment:
Q  225 ttgggtgaggtaaaatgtccacccgttaaactattgggccggtttggataaacccactaattttcggattgg 296  Q
    |||||| ||||||||| ||||||||||| | || ||||  |||||||| |||||||||||||| ||| ||||    
T  31200002 ttgggttaggtaaaatatccacccgttagattaatgggtgggtttggacaaacccactaatttccggtttgg 31200073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 287
Target Start/End: Complemental strand, 8059686 - 8059624
Alignment:
Q  225 ttgggtgaggtaaaatgtccacccgttaaactattgggccggtttggataaacccactaattt 287  Q
    |||||| ||||||||| ||||||||||||| || ||||  |||||||  ||||||||||||||    
T  8059686 ttgggttaggtaaaatatccacccgttaaattaatgggtgggtttgggcaaacccactaattt 8059624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 287
Target Start/End: Complemental strand, 50050432 - 50050370
Alignment:
Q  225 ttgggtgaggtaaaatgtccacccgttaaactattgggccggtttggataaacccactaattt 287  Q
    |||||| ||||||||| ||||||||||||| || ||||   ||||||| ||||||||||||||    
T  50050432 ttgggttaggtaaaatatccacccgttaaattaatgggtgagtttggacaaacccactaattt 50050370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 172
Target Start/End: Original strand, 48788519 - 48788600
Alignment:
Q  91 gtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaat 172  Q
    ||||||||| || |||| ||||| |||||||| ||| ||||||||||| ||||| |||| ||||| || ||||  |||||||    
T  48788519 gtacgtgggtcgatttgagttggatttggccagacctaaaacctaaactatatatggtactccggcttaggtggtgtaaaat 48788600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 84 - 148
Target Start/End: Original strand, 5972872 - 5972936
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggt 148  Q
    |||||||||| |||||  | |||| |||| |||||||||||||||| |||  |||||||||||||    
T  5972872 taggggtgtaagtgggttgatttgagttgagtttggccaaacccaagacccgaaccatatagggt 5972936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 84 - 184
Target Start/End: Original strand, 15836489 - 15836588
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgtt 183  Q
    ||||||||| ||||||  | |||||| |||||||||| |||||||| |||  || || ||||| || |||||||| ||||||  |||| |||||||||||    
T  15836489 taggggtgttcgtgggtggatttgggctgggtttggctaaacccaagacccgaatca-ataggatactccggtttaggtgagaaaaaacgtccacccgtt 15836587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 84 - 228
Target Start/End: Original strand, 396834 - 396978
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgtt 183  Q
    |||||||||| ||||| || ||||||||||||||||| |||||||| |||  |||||||||||||| |||||||||||| ||||||||| ||||||||||    
T  396834 taggggtgtaagtgggtcgatttgggttgggtttggctaaacccaagacccgaaccatatagggtactccggtttgggttaggtaaaatatccacccgtt 396933  T
Q  184 aaactattgggccggtttggataaacccactaattttcggattgg 228  Q
    ||| || ||||  |||||||  |||||||||||||||||| ||||    
T  396934 aaattaatgggtgggtttgggcaaacccactaattttcggtttgg 396978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 225 - 296
Target Start/End: Original strand, 396907 - 396978
Alignment:
Q  225 ttgggtgaggtaaaatgtccacccgttaaactattgggccggtttggataaacccactaattttcggattgg 296  Q
    |||||| ||||||||| ||||||||||||| || ||||  |||||||  |||||||||||||||||| ||||    
T  396907 ttgggttaggtaaaatatccacccgttaaattaatgggtgggtttgggcaaacccactaattttcggtttgg 396978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 1e-35; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 84 - 228
Target Start/End: Complemental strand, 23928552 - 23928408
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgtt 183  Q
    |||||||||| |||||  | |||||||||||||||| ||||||||| |||  ||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  23928552 taggggtgtaagtgggttgatttgggttgggtttggtcaaacccaagacccgaaccatatagggtattccggtttgggttaggtaaaatatccacccgtt 23928453  T
Q  184 aaactattgggccggtttggataaacccactaattttcggattgg 228  Q
    ||| || ||||  |||||||  |||||||||||||||||| ||||    
T  23928452 aaattaatgggtgggtttgggcaaacccactaattttcggtttgg 23928408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 84 - 228
Target Start/End: Complemental strand, 9889392 - 9889248
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgtt 183  Q
    ||||||||||| |||| || |||||||||||||||||||||||| | |||  |||||||||||||| |||||||||||| ||||||||| ||||||||||    
T  9889392 taggggtgtacatgggtcgatttgggttgggtttggccaaacccgagacccgaaccatatagggtactccggtttgggttaggtaaaatatccacccgtt 9889293  T
Q  184 aaactattgggccggtttggataaacccactaattttcggattgg 228  Q
    ||| || ||||  |||||||  |||||||||||||| ||| ||||    
T  9889292 aaattaatgggtgggtttgggcaaacccactaatttccggtttgg 9889248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 84 - 230
Target Start/End: Original strand, 34696268 - 34696414
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgtt 183  Q
    ||||||||| ||||||  |||||||| |||||||||||||||| || |||| ||||||||| | ||||||||||||||||||||||||||||||||||||    
T  34696268 taggggtgttcgtgggtgggtttgggctgggtttggccaaacctaagacctgaaccatataagatattccggtttgggtgaggtaaaatgtccacccgtt 34696367  T
Q  184 aaactattgggccggtttggataaacccactaattttcggattgggt 230  Q
    | | || | ||  |||||||| |||||||||| ||| ||| ||||||    
T  34696368 atattaataggtgggtttggacaaacccactagtttccggtttgggt 34696414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 84 - 228
Target Start/End: Complemental strand, 29290051 - 29289907
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgtt 183  Q
    |||||||||| ||||| || |||||||||||||||||||||||||| |||  |||||||||| ||| |||||||| ||| || |||||| | ||||||||    
T  29290051 taggggtgtaagtgggtcgatttgggttgggtttggccaaacccaagacccgaaccatatagagtactccggtttaggttagataaaatattcacccgtt 29289952  T
Q  184 aaactattgggccggtttggataaacccactaattttcggattgg 228  Q
    ||| ||  |||  |||||||  |||||||||||||||||| ||||    
T  29289951 aaattaacgggtgggtttgggcaaacccactaattttcggtttgg 29289907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 84 - 228
Target Start/End: Complemental strand, 35668041 - 35667897
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgtt 183  Q
    ||||||||||||||||  ||||||||||| ||||| ||||| |||| ||| ||||||||||| ||| | |||||||||||||||||||||| || |||||    
T  35668041 taggggtgtacgtgggtgggtttgggttgagtttgaccaaatccaagacccaaaccatatagagtactgcggtttgggtgaggtaaaatgttcatccgtt 35667942  T
Q  184 aaactattgggccggtttggataaacccactaattttcggattgg 228  Q
    | | || ||||  ||| |||| |||||||||| ||||||| ||||    
T  35667941 atattactgggtgggtctggacaaacccactagttttcggtttgg 35667897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 84 - 185
Target Start/End: Original strand, 40484265 - 40484366
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgtt 183  Q
    ||||||||||| ||||| |||||||| |||||||| | |||||||| ||   |||||||||||||| |||||||||||||||||||||||||||||| ||    
T  40484265 taggggtgtacctgggcgggtttgggctgggtttgactaaacccaagactcgaaccatatagggtactccggtttgggtgaggtaaaatgtccacccatt 40484364  T
Q  184 aa 185  Q
    ||    
T  40484365 aa 40484366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 111 - 194
Target Start/End: Original strand, 4421028 - 4421110
Alignment:
Q  111 tgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgttaaactattggg 194  Q
    ||||||||||||||||||||||| |||| | |||||||| | ||||||||||||||||||||  |||| |||||  ||||||||    
T  4421028 tgggtttggccaaacccaaaacc-aaactaaatagggtacttcggtttgggtgaggtaaaataaccactcgttatgctattggg 4421110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 84 - 230
Target Start/End: Complemental strand, 6011341 - 6011196
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgtt 183  Q
    |||||||||  |||||  |||||| |||| ||||||| ||| |||||||| |||| | ||| |||| |  |||||||||||||||||||  |||||||||    
T  6011341 taggggtgtttgtgggtgggtttgagttgagtttggctaaatccaaaacc-aaactaaataaggtactttggtttgggtgaggtaaaataaccacccgtt 6011243  T
Q  184 aaactattgggccggtttggataaacccactaattttcggattgggt 230  Q
    | | |||||||  |||||||  ||||| ||||||||| || ||||||    
T  6011242 atattattgggtgggtttgggcaaacctactaatttttgggttgggt 6011196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 104 - 228
Target Start/End: Original strand, 14633760 - 14633884
Alignment:
Q  104 tttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgttaaactattgggccggtttgg 203  Q
    |||||||||| |||| ||||||| || | || || ||| || |||| ||||||||||||||||||||||||||| || ||| | || ||||  ||| |||    
T  14633760 tttgggttggatttgaccaaacctaagatctgaatcatgtatggtactccggtttgggtgaggtaaaatgtccatccattatattaatgggtgggtatgg 14633859  T
Q  204 ataaacccactaattttcggattgg 228  Q
      ||| |||||||||||||| ||||    
T  14633860 gcaaatccactaattttcggtttgg 14633884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 225 - 296
Target Start/End: Complemental strand, 23928479 - 23928408
Alignment:
Q  225 ttgggtgaggtaaaatgtccacccgttaaactattgggccggtttggataaacccactaattttcggattgg 296  Q
    |||||| ||||||||| ||||||||||||| || ||||  |||||||  |||||||||||||||||| ||||    
T  23928479 ttgggttaggtaaaatatccacccgttaaattaatgggtgggtttgggcaaacccactaattttcggtttgg 23928408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 225 - 298
Target Start/End: Original strand, 34696341 - 34696414
Alignment:
Q  225 ttgggtgaggtaaaatgtccacccgttaaactattgggccggtttggataaacccactaattttcggattgggt 298  Q
    |||||||||||||||||||||||||||| | || | ||  |||||||| |||||||||| ||| ||| ||||||    
T  34696341 ttgggtgaggtaaaatgtccacccgttatattaataggtgggtttggacaaacccactagtttccggtttgggt 34696414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 191
Target Start/End: Original strand, 12854169 - 12854248
Alignment:
Q  111 tgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgttaaactatt 191  Q
    ||||||| ||||||||||||| | |||| | ||||| || |||||||| |||||||||||||  |||||||||| ||||||    
T  12854169 tgggtttagccaaacccaaaatc-aaactagataggatactccggtttaggtgaggtaaaataaccacccgttatactatt 12854248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 221
Target Start/End: Original strand, 26362604 - 26362739
Alignment:
Q  85 aggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgtta 184  Q
    |||||||| ||||||  ||||||| ||||||||||| |||||||| |||   ||||||||   || |||||||||| || ||||||| ||||| || |||    
T  26362604 aggggtgttcgtgggtgggtttggattgggtttggctaaacccaagacc-cgaccatataatatactccggtttggatgcggtaaaaagtccatccatta 26362702  T
Q  185 aactattgggccggtttggataaacccactaattttc 221  Q
     | || ||||  |||||||| |||||||||| |||||    
T  26362703 tattaatgggtgggtttggacaaacccactagttttc 26362739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 102 - 133
Target Start/End: Complemental strand, 7945824 - 7945793
Alignment:
Q  102 ggtttgggttgggtttggccaaacccaaaacc 133  Q
    ||||||||||||||||||||||||||||||||    
T  7945824 ggtttgggttgggtttggccaaacccaaaacc 7945793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 225 - 296
Target Start/End: Complemental strand, 9889319 - 9889248
Alignment:
Q  225 ttgggtgaggtaaaatgtccacccgttaaactattgggccggtttggataaacccactaattttcggattgg 296  Q
    |||||| ||||||||| ||||||||||||| || ||||  |||||||  |||||||||||||| ||| ||||    
T  9889319 ttgggttaggtaaaatatccacccgttaaattaatgggtgggtttgggcaaacccactaatttccggtttgg 9889248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 129
Target Start/End: Original strand, 425608 - 425649
Alignment:
Q  88 ggtgtacgtgggccggtttgggttgggtttggccaaacccaa 129  Q
    |||||||||||| | |||||||||||||||||| ||||||||    
T  425608 ggtgtacgtgggtcagtttgggttgggtttggctaaacccaa 425649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 298
Target Start/End: Complemental strand, 6011269 - 6011196
Alignment:
Q  225 ttgggtgaggtaaaatgtccacccgttaaactattgggccggtttggataaacccactaattttcggattgggt 298  Q
    ||||||||||||||||  |||||||||| | |||||||  |||||||  ||||| ||||||||| || ||||||    
T  6011269 ttgggtgaggtaaaataaccacccgttatattattgggtgggtttgggcaaacctactaatttttgggttgggt 6011196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 88 - 228
Target Start/End: Complemental strand, 8423999 - 8423859
Alignment:
Q  88 ggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgttaaac 187  Q
    ||||||||||||  ||||||||||||||||| ||||||||||||||  |||||||||| ||| ||||||||||||||||||||||||||| |||||| |     
T  8423999 ggtgtacgtgggtgggtttgggttgggtttgaccaaacccaaaacccgaaccatatagagtactccggtttgggtgaggtaaaatgtccatccgttatat 8423900  T
Q  188 tattgggccggtttggataaacccactaattttcggattgg 228  Q
    || ||||  ||| |||| |||||||||| ||||||| ||||    
T  8423899 tactgggtgggtctggacaaacccactagttttcggtttgg 8423859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 84 - 228
Target Start/End: Complemental strand, 30357581 - 30357437
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgtt 183  Q
    |||||||||| ||||| || |||||||||||||||||||||||||| |||  |||||||||||||| |||||||||||| ||||||||| ||||||||||    
T  30357581 taggggtgtaagtgggtcgatttgggttgggtttggccaaacccaagacccgaaccatatagggtactccggtttgggttaggtaaaatatccacccgtt 30357482  T
Q  184 aaactattgggccggtttggataaacccactaattttcggattgg 228  Q
    ||| || |||   |||||||  |||||||||||||| ||| ||||    
T  30357481 aaattaatggatgggtttgggcaaacccactaatttccggtttgg 30357437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 86 - 228
Target Start/End: Original strand, 34899164 - 34899306
Alignment:
Q  86 ggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgttaa 185  Q
    |||||||| ||||| || |||||||||||||||||||||||||| ||| |||| |||||||||| |||||||||||| ||||||||| |||| |||||||    
T  34899164 ggggtgtaagtgggtcgatttgggttgggtttggccaaacccaagacccaaactatatagggtactccggtttgggttaggtaaaatatccatccgttaa 34899263  T
Q  186 actattgggccggtttggataaacccactaattttcggattgg 228  Q
    | || ||||  |||||||  |||||||||||||| ||| ||||    
T  34899264 attaatgggtgggtttgggcaaacccactaatttccggtttgg 34899306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 84 - 228
Target Start/End: Original strand, 22416442 - 22416586
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgtt 183  Q
    |||||||||| |||||  | |||||||||||||||||||||||||| |||  |||||||||||||| ||||||||||||  ||| |||| ||||||||||    
T  22416442 taggggtgtaagtgggttgatttgggttgggtttggccaaacccaagacccgaaccatatagggtactccggtttgggtttggtcaaatatccacccgtt 22416541  T
Q  184 aaactattgggccggtttggataaacccactaattttcggattgg 228  Q
    ||| || ||||  |||||||  |||||||||||||| ||| ||||    
T  22416542 aaattaatgggtgggtttgggcaaacccactaatttccggtttgg 22416586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 87 - 194
Target Start/End: Original strand, 36441253 - 36441359
Alignment:
Q  87 gggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgttaaa 186  Q
    |||||| ||||||  |||||||||||| ||||||||||||||||||| |||||| ||| |||| ||||||||||||||||||||||  |||||||||| |    
T  36441253 gggtgttcgtgggtgggtttgggttggatttggccaaacccaaaacc-aaaccaaataaggtactccggtttgggtgaggtaaaataaccacccgttata 36441351  T
Q  187 ctattggg 194  Q
    ||||||||    
T  36441352 ctattggg 36441359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 84 - 228
Target Start/End: Complemental strand, 27451840 - 27451696
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgtt 183  Q
    ||||||||| ||||||  ||||||| |||||||||||||||||||| |||  ||||||||||| || ||| ||||||||||||||||| |||||||| ||    
T  27451840 taggggtgttcgtgggtgggtttggattgggtttggccaaacccaagacccgaaccatataggatactccagtttgggtgaggtaaaacgtccacccatt 27451741  T
Q  184 aaactattgggccggtttggataaacccactaattttcggattgg 228  Q
    | | || ||||  |||||||  |||| ||||| ||||||| ||||    
T  27451740 atattaatgggtgggtttgggaaaactcactagttttcggtttgg 27451696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 84 - 228
Target Start/End: Original strand, 17473613 - 17473755
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgtt 183  Q
    |||||||||||||||| || |||||| || |||||||||||||||| ||  |||||||||| ||||  ||||||| ||||||||  ||||||||||||||    
T  17473613 taggggtgtacgtgggtcgatttgggctgagtttggccaaacccaagactcaaaccatataaggtaccccggtttcggtgaggt--aatgtccacccgtt 17473710  T
Q  184 aaactattgggccggtttggataaacccactaattttcggattgg 228  Q
    | | || ||||   |||||| ||||| ||||||||||||| ||||    
T  17473711 atattaatgggtgagtttgggtaaactcactaattttcggtttgg 17473755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 84 - 220
Target Start/End: Complemental strand, 20565503 - 20565368
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgtt 183  Q
    ||||||||| ||||||  |||||||||||| |||||||||| ||||| || ||  || |||||||| ||| ||||||||| ||||||||  |||||||||    
T  20565503 taggggtgttcgtgggtgggtttgggttggatttggccaaatccaaaccc-aattcaaatagggtactccagtttgggtggggtaaaataaccacccgtt 20565405  T
Q  184 aaactattgggccggtttggataaacccactaatttt 220  Q
    | |||||||||  |||||||  |||||||||||||||    
T  20565404 atactattgggtgggtttgggcaaacccactaatttt 20565368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 146 - 220
Target Start/End: Original strand, 18765142 - 18765216
Alignment:
Q  146 ggtattccggtttgggtgaggtaaaatgtccacccgttaaactattgggccggtttggataaacccactaatttt 220  Q
    |||| ||||||||||||||||||||||  |||||||||| |||||||||  |||||||  |||||||||||||||    
T  18765142 ggtactccggtttgggtgaggtaaaataaccacccgttatactattgggtgggtttgggcaaacccactaatttt 18765216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 84 - 157
Target Start/End: Complemental strand, 10789214 - 10789141
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtt 157  Q
    |||||||||| |||||  | |||||||||||||||||||||||||| |||  |||||||||||||| |||||||    
T  10789214 taggggtgtaagtgggttgatttgggttgggtttggccaaacccaagacccgaaccatatagggtactccggtt 10789141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 83 - 220
Target Start/End: Original strand, 18890554 - 18890690
Alignment:
Q  83 ataggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgt 182  Q
    |||||||||| ||||||   |||||||||| ||||||||||| |||||| | |||||| | | |||| | | ||||||||||||||||||  ||||||||    
T  18890554 ataggggtgttcgtgggtgagtttgggttgagtttggccaaatccaaaatc-aaaccaaagatggtacttcagtttgggtgaggtaaaataaccacccgt 18890652  T
Q  183 taaactattgggccggtttggataaacccactaatttt 220  Q
    || |||||| ||  | |||||| ||||||| |||||||    
T  18890653 tatactatttggtggatttggacaaacccattaatttt 18890690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 142 - 230
Target Start/End: Complemental strand, 13369884 - 13369796
Alignment:
Q  142 atagggtattccggtttgggtgaggtaaaatgtccacccgttaaactattgggccggtttggataaacccactaattttcggattgggt 230  Q
    |||||||| | |||||||||||| |||||||  |||  ||||| |||||||||  |||||||||||||||||||||||| || ||||||    
T  13369884 atagggtacttcggtttgggtgaagtaaaataaccatacgttatactattgggtgggtttggataaacccactaatttttgggttgggt 13369796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 137 - 184
Target Start/End: Complemental strand, 8371620 - 8371573
Alignment:
Q  137 accatatagggtattccggtttgggtgaggtaaaatgtccacccgtta 184  Q
    ||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  8371620 accatatagagtactccggtttgggtgaggtaaaatgtccacccgtta 8371573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 136 - 186
Target Start/End: Complemental strand, 10789139 - 10789089
Alignment:
Q  136 aaccatatagggtattccggtttgggtgaggtaaaatgtccacccgttaaa 186  Q
    |||||||||||||| |||||||||||| ||||||||| |||||||||||||    
T  10789139 aaccatatagggtactccggtttgggttaggtaaaatatccacccgttaaa 10789089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 219 - 298
Target Start/End: Complemental strand, 13369875 - 13369796
Alignment:
Q  219 ttcggattgggtgaggtaaaatgtccacccgttaaactattgggccggtttggataaacccactaattttcggattgggt 298  Q
    ||||| |||||||| |||||||  |||  ||||| |||||||||  |||||||||||||||||||||||| || ||||||    
T  13369875 ttcggtttgggtgaagtaaaataaccatacgttatactattgggtgggtttggataaacccactaatttttgggttgggt 13369796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 225 - 288
Target Start/End: Original strand, 18765153 - 18765216
Alignment:
Q  225 ttgggtgaggtaaaatgtccacccgttaaactattgggccggtttggataaacccactaatttt 288  Q
    ||||||||||||||||  |||||||||| |||||||||  |||||||  |||||||||||||||    
T  18765153 ttgggtgaggtaaaataaccacccgttatactattgggtgggtttgggcaaacccactaatttt 18765216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 84 - 145
Target Start/End: Original strand, 16749301 - 16749362
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatag 145  Q
    ||||||| ||| |||| |||||||| ||| ||||||||||||||||||||  ||||||||||    
T  16749301 taggggtatacatgggtcggtttggattgagtttggccaaacccaaaacccgaaccatatag 16749362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 230
Target Start/End: Complemental strand, 17206382 - 17206255
Alignment:
Q  102 ggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgttaaactattgggccggttt 201  Q
    |||||||||||  ||||| ||||||||| ||| |||||| |||| ||| ||| ||||||||||||||||||   || |||||| ||||||| |   ||||    
T  17206382 ggtttgggttgaatttggtcaaacccaagacc-aaaccaaatagagtactccagtttgggtgaggtaaaataatcatccgttatactattgagtgagttt 17206284  T
Q  202 ggataaacccactaattttcggattgggt 230  Q
    ||  |||| |||||||||| || ||||||    
T  17206283 gggcaaactcactaatttttgggttgggt 17206255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 192
Target Start/End: Original strand, 42956998 - 42957102
Alignment:
Q  88 ggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgttaaac 187  Q
    ||||||||||| |||||||||  || |||||  ||||| ||||||||||| |||||| | ||  | ||||||||||||| |||||  |||| ||||| ||    
T  42956998 ggtgtacgtggaccggtttggaatgtgtttgttcaaactcaaaacctaaatcatataagataccctggtttgggtgaggcaaaataaccactcgttatac 42957097  T
Q  188 tattg 192  Q
    |||||    
T  42957098 tattg 42957102  T

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Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 225 - 296
Target Start/End: Complemental strand, 8423930 - 8423859
Alignment:
Q  225 ttgggtgaggtaaaatgtccacccgttaaactattgggccggtttggataaacccactaattttcggattgg 296  Q
    ||||||||||||||||||||| |||||| | || ||||  ||| |||| |||||||||| ||||||| ||||    
T  8423930 ttgggtgaggtaaaatgtccatccgttatattactgggtgggtctggacaaacccactagttttcggtttgg 8423859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 225 - 288
Target Start/End: Complemental strand, 20565431 - 20565368
Alignment:
Q  225 ttgggtgaggtaaaatgtccacccgttaaactattgggccggtttggataaacccactaatttt 288  Q
    ||||||| ||||||||  |||||||||| |||||||||  |||||||  |||||||||||||||    
T  20565431 ttgggtggggtaaaataaccacccgttatactattgggtgggtttgggcaaacccactaatttt 20565368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 84 - 220
Target Start/End: Complemental strand, 24140712 - 24140573
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggt----ttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacc 179  Q
    ||||||||| ||||||  ||||||||||||||    |||||||||   ||||| ||||| | ||| |||||| |||||||||||| |||||||  ||| |    
T  24140712 taggggtgttcgtgggtgggtttgggttgggtgggtttggccaaatttaaaac-taaactaaataaggtatttcggtttgggtgaagtaaaataaccatc 24140614  T
Q  180 cgttaaactattgggccggtttggataaacccactaatttt 220  Q
     |||| ||||||||   |||||||  |||||||||||||||    
T  24140613 tgttatactattggatgggtttggtcaaacccactaatttt 24140573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 228
Target Start/End: Complemental strand, 37576130 - 37576053
Alignment:
Q  151 tccggtttgggtgaggtaaaatgtccacccgttaaactattgggccggtttggataaacccactaattttcggattgg 228  Q
    |||||||||||| ||||||||| | ||||||||||| || |||   |||||||| ||||||| |||||| ||| ||||    
T  37576130 tccggtttgggttaggtaaaatattcacccgttaaattaatggatgggtttggacaaacccattaatttccggtttgg 37576053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 129
Target Start/End: Complemental strand, 37576303 - 37576258
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaa 129  Q
    |||||||||| |||||  | ||||||||||||||||||||||||||    
T  37576303 taggggtgtaagtgggttgatttgggttgggtttggccaaacccaa 37576258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 84 - 228
Target Start/End: Original strand, 8769923 - 8770067
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgtt 183  Q
    |||||||||| |||||  | |||||||||||||||||||||||||| |||  ||||||||  |||| ||||||||||||  |||||||| ||||||||||    
T  8769923 taggggtgtaagtgggttgatttgggttgggtttggccaaacccaagacccgaaccatatttggtactccggtttgggtttggtaaaatatccacccgtt 8770022  T
Q  184 aaactattgggccggtttggataaacccactaattttcggattgg 228  Q
    ||| || ||||  |||||||  |||||||||||||||||| ||||    
T  8770023 aaattaatgggtgggtttgggcaaacccactaattttcggtttgg 8770067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 83 - 193
Target Start/End: Complemental strand, 19000011 - 18999901
Alignment:
Q  83 ataggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgt 182  Q
    |||||||||||||||||  |||||||||||||||||||||||||||| | |  ||| |||||| ||| || |||||||||||||||||||||||||||||    
T  19000011 ataggggtgtacgtgggtgggtttgggttgggtttggccaaacccaagatccgaactatatagagtactctggtttgggtgaggtaaaatgtccacccgt 18999912  T
Q  183 taaactattgg 193  Q
    || | ||||||    
T  18999911 tatattattgg 18999901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 104 - 228
Target Start/End: Original strand, 3100550 - 3100674
Alignment:
Q  104 tttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgttaaactattgggccggtttgg 203  Q
    |||||||||||||||||||||||||| |||  |||||||||||||| |||||||||| | ||||||||| ||||||||||||| || ||||  |||| ||    
T  3100550 tttgggttgggtttggccaaacccaagacccgaaccatatagggtactccggtttggattaggtaaaatatccacccgttaaattaatgggtgggttcgg 3100649  T
Q  204 ataaacccactaattttcggattgg 228  Q
      |||||||||||||| ||| ||||    
T  3100650 gcaaacccactaatttccggtttgg 3100674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 83 - 219
Target Start/End: Complemental strand, 30125939 - 30125803
Alignment:
Q  83 ataggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgt 182  Q
    ||||||||||| |||||  | |||||||||| ||||| ||||||||| ||   |||||||||||||| |||||||||||| ||||||||| |||||||||    
T  30125939 ataggggtgtaagtgggttgatttgggttggatttggtcaaacccaagactcgaaccatatagggtactccggtttgggttaggtaaaatatccacccgt 30125840  T
Q  183 taaactattgggccggtttggataaacccactaattt 219  Q
    |||| || ||||  |||||||  ||||||||||||||    
T  30125839 taaattaatgggtgggtttgggcaaacccactaattt 30125803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 84 - 171
Target Start/End: Original strand, 24261188 - 24261275
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaa 171  Q
    ||||||||||| |||| |||||||||||||||||||  |||||||||||| |||||| ||||  || |||||||||||||||||||||    
T  24261188 taggggtgtacatgggtcggtttgggttgggtttggtaaaacccaaaacccaaaccacatagaatactccggtttgggtgaggtaaaa 24261275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 83 - 220
Target Start/End: Original strand, 23769829 - 23769962
Alignment:
Q  83 ataggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgt 182  Q
    ||||||||||| |||| | |||||||||||||||||||| ||||| | ||| ||| ||||||||||| || |||||| ||||||||||||    ||||||    
T  23769829 ataggggtgtatgtggtc-ggtttgggttgggtttggccgaaccccagacccaaagcatatagggtactctggtttgagtgaggtaaaat---aacccgt 23769924  T
Q  183 taaactattgggccggtttggataaacccactaatttt 220  Q
    |||| ||||  || ||||| || |||||||||||||||    
T  23769925 taaattattatgctggtttcgacaaacccactaatttt 23769962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 102 - 230
Target Start/End: Original strand, 31261084 - 31261210
Alignment:
Q  102 ggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgttaaactattgggccggttt 201  Q
    ||||||| |||||||||| ||||||||||||| |||||| ||| |||| | |||||||||| |||| ||||  |||||||||| |||||||||  |||||    
T  31261084 ggtttggattgggtttggtcaaacccaaaacc-aaaccaaatatggtacttcggtttgggtaaggt-aaataaccacccgttatactattgggtaggttt 31261181  T
Q  202 ggataaacccactaattttcggattgggt 230  Q
    ||  |||||||| |||||| || ||||||    
T  31261182 gggcaaacccacaaatttttgggttgggt 31261210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 102 - 220
Target Start/End: Complemental strand, 24496420 - 24496303
Alignment:
Q  102 ggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgttaaactattgggccggttt 201  Q
    ||||||||||||||||| |||||||||||||| |||  | |||||||| | | ||||||||| ||||||||  ||| |||||| ||||||||   |||||    
T  24496420 ggtttgggttgggtttgaccaaacccaaaacc-aaattaaatagggtacttcagtttgggtggggtaaaataaccatccgttatactattggatgggttt 24496322  T
Q  202 ggataaacccactaatttt 220  Q
    ||| ||||||| |||||||    
T  24496321 ggacaaacccattaatttt 24496303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 83 - 203
Target Start/End: Original strand, 9605919 - 9606038
Alignment:
Q  83 ataggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgt 182  Q
    |||||||||| ||||||  ||||| | |||||||||| ||||| ||||||| |||| | |||||||| || |||||||||||||||||||  ||| | ||    
T  9605919 ataggggtgttcgtgggtgggtttagtttgggtttggtcaaactcaaaacc-aaactaaatagggtactcaggtttgggtgaggtaaaataaccatctgt 9606017  T
Q  183 taaactattgggccggtttgg 203  Q
    || |||||||||  |||||||    
T  9606018 tatactattgggtgggtttgg 9606038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 82 - 177
Target Start/End: Original strand, 6939929 - 6940024
Alignment:
Q  82 cataggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtcca 177  Q
    ||||||||| |||||||| |||||||||||||||||||  ||| |||| | |   | |||||||| || |||||||||||||  ||||||||||||    
T  6939929 cataggggtctacgtgggtcggtttgggttgggtttggttaaatccaagatccggatcatataggatactccggtttgggtggcgtaaaatgtcca 6940024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 233 - 296
Target Start/End: Original strand, 8770004 - 8770067
Alignment:
Q  233 ggtaaaatgtccacccgttaaactattgggccggtttggataaacccactaattttcggattgg 296  Q
    |||||||| ||||||||||||| || ||||  |||||||  |||||||||||||||||| ||||    
T  8770004 ggtaaaatatccacccgttaaattaatgggtgggtttgggcaaacccactaattttcggtttgg 8770067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 90 - 177
Target Start/End: Original strand, 13601141 - 13601227
Alignment:
Q  90 tgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtcca 177  Q
    ||||||||||  |||||||| |||||||| |||||||||| |||  ||||| |||| ||| || ||||||||||| | ||||||||||    
T  13601141 tgtacgtgggtgggtttgggctgggtttg-ccaaacccaagacccgaaccacatagagtactctggtttgggtgaagaaaaatgtcca 13601227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 287
Target Start/End: Complemental strand, 30125865 - 30125803
Alignment:
Q  225 ttgggtgaggtaaaatgtccacccgttaaactattgggccggtttggataaacccactaattt 287  Q
    |||||| ||||||||| ||||||||||||| || ||||  |||||||  ||||||||||||||    
T  30125865 ttgggttaggtaaaatatccacccgttaaattaatgggtgggtttgggcaaacccactaattt 30125803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 84 - 186
Target Start/End: Complemental strand, 31834694 - 31834592
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgtt 183  Q
    ||||||||| ||||||  ||||||  |||||||||| |||||  || ||   || |||||||| || |||| ||||| |||||||||||||||| |||||    
T  31834694 taggggtgttcgtgggtaggtttgaattgggtttggtcaaacttaagactcgaatcatataggatactccgatttggatgaggtaaaatgtccatccgtt 31834595  T
Q  184 aaa 186  Q
    |||    
T  31834594 aaa 31834592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 261
Target Start/End: Complemental strand, 18999937 - 18999901
Alignment:
Q  225 ttgggtgaggtaaaatgtccacccgttaaactattgg 261  Q
    |||||||||||||||||||||||||||| | ||||||    
T  18999937 ttgggtgaggtaaaatgtccacccgttatattattgg 18999901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 102 - 228
Target Start/End: Complemental strand, 28861 - 28735
Alignment:
Q  102 ggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgttaaactattgggccggttt 201  Q
    |||||||||||||||||||||||||||| |||| ||||||||||| || | || ||||||||||||||||||| ||||| ||| | || ||||  |||||    
T  28861 ggtttgggttgggtttggccaaacccaagacctgaaccatataggatacttcgatttgggtgaggtaaaatgttcacccattatattaatgggtgggttt 28762  T
Q  202 ggataaacccactaattttcggattgg 228  Q
    ||| |||||||||| ||| ||| ||||    
T  28761 ggacaaacccactagtttccggtttgg 28735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0688 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: scaffold0688
Description:

Target: scaffold0688; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 111 - 230
Target Start/End: Complemental strand, 2869 - 2751
Alignment:
Q  111 tgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgttaaactattgggccggtttggataaacc 210  Q
    |||||||||||||| ||||||| |||| || |||||||| | | ||||||||||||||||||  |||||||||| | |||||||  |||||||| |||||    
T  2869 tgggtttggccaaatccaaaac-taaatcaaatagggtacttcagtttgggtgaggtaaaataaccacccgttatattattgggtgggtttggacaaacc 2771  T
Q  211 cactaattttcggattgggt 230  Q
    |||||||||| || ||||||    
T  2770 cactaatttttgggttgggt 2751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0688; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 111 - 230
Target Start/End: Complemental strand, 4536 - 4418
Alignment:
Q  111 tgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccacccgttaaactattgggccggtttggataaacc 210  Q
    |||||||||||||| | ||||| ||||| | |||||||| | | ||||||||||||||||||  |||||||||| | |||||||  |||||||  |||||    
T  4536 tgggtttggccaaatcaaaaac-taaactaaatagggtacttcagtttgggtgaggtaaaataaccacccgttatattattgggtgggtttggccaaacc 4438  T
Q  211 cactaattttcggattgggt 230  Q
    |||||||||| || ||||||    
T  4437 cactaatttttgggttgggt 4418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0688; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 298
Target Start/End: Complemental strand, 2824 - 2751
Alignment:
Q  225 ttgggtgaggtaaaatgtccacccgttaaactattgggccggtttggataaacccactaattttcggattgggt 298  Q
    ||||||||||||||||  |||||||||| | |||||||  |||||||| ||||||||||||||| || ||||||    
T  2824 ttgggtgaggtaaaataaccacccgttatattattgggtgggtttggacaaacccactaatttttgggttgggt 2751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0688; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 225 - 298
Target Start/End: Complemental strand, 4491 - 4418
Alignment:
Q  225 ttgggtgaggtaaaatgtccacccgttaaactattgggccggtttggataaacccactaattttcggattgggt 298  Q
    ||||||||||||||||  |||||||||| | |||||||  |||||||  ||||||||||||||| || ||||||    
T  4491 ttgggtgaggtaaaataaccacccgttatattattgggtgggtttggccaaacccactaatttttgggttgggt 4418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0954 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0954
Description:

Target: scaffold0954; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 84 - 162
Target Start/End: Original strand, 163 - 241
Alignment:
Q  84 taggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggt 162  Q
    |||||||||||||| | | |||||||||| ||| | |||||||||||||  ||||||||||||||| |||||| |||||    
T  163 taggggtgtacgtgagtcagtttgggttgagttcgaccaaacccaaaactcaaaccatatagggtaatccggtctgggt 241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 103 - 180
Target Start/End: Original strand, 26395 - 26472
Alignment:
Q  103 gtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgtccaccc 180  Q
    ||||| ||||||||||||||||||||| |||  ||||||| ||| || |||||||| ||| || ||||| ||||||||    
T  26395 gtttgagttgggtttggccaaacccaagacccgaaccataaaggatactccggtttaggtaagataaaacgtccaccc 26472  T

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Target: scaffold0223 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 83 - 174
Target Start/End: Original strand, 28528 - 28617
Alignment:
Q  83 ataggggtgtacgtgggccggtttgggttgggtttggccaaacccaaaacctaaaccatatagggtattccggtttgggtgaggtaaaatgt 174  Q
    |||||||||| ||||||  |||||||||||||||||| ||||| ||||||| |||| | ||||| || ||  ||||||||||||||| ||||    
T  28528 ataggggtgttcgtgggt-ggtttgggttgggtttggtcaaacacaaaacc-aaactaaataggatactctagtttgggtgaggtaagatgt 28617  T

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Target: scaffold0004 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 70
Target Start/End: Original strand, 247398 - 247426
Alignment:
Q  42 accatatcagcttataaatgttggactaa 70  Q
    |||||||||||||||||||||||||||||    
T  247398 accatatcagcttataaatgttggactaa 247426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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