View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0543_low_1 (Length: 977)

Name: NF0543_low_1
Description: NF0543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0543_low_1
NF0543_low_1
[»] chr5 (1 HSPs)
chr5 (84-879)||(4996426-4997221)


Alignment Details
Target: chr5 (Bit Score: 708; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 708; E-Value: 0
Query Start/End: Original strand, 84 - 879
Target Start/End: Complemental strand, 4997221 - 4996426
Alignment:
Q  84 atgaaggtgggagcagggtagcatggaatgtgaggaaatagcattaccaagaaaattggtagcaagtgaaagattttggagtgttggaatatgacagaaa 183  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  4997221 atgaaggtgggagcagggtagcatggaatgtgaggaaatagcattaccaagaaaattcgtagcaagtgaaagattttggagtgttggaatatgacagaaa 4997122  T
Q  184 ttagatggaaaatcaccataaataccggtttctgtgaggtcgattgatacaacggatttattccacgaatcgcaggttatgcctctccagttacaaggat 283  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  4997121 ttagatggaaaatcaccataaataccggtttctgtgaggtcgattgatacaacggatttattccgcgaatcgcaggttatgcctctccagttacaaggat 4997022  T
Q  284 tatgatctgtgtttggaagccaatcattgagacttttgtttttgtcatcaatttgtgtgttctttacatgaagaagaatttcatagtctcttgagagtga 383  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4997021 tatgatctgtgtttggaagccaatcattgagacttttgtttttgtcatcaatttgtgtgttctttacatgaagaagaatttcatagtctcttgagagtga 4996922  T
Q  384 aaaggtggttccatttgaacatagtagtgaaaagagaagaatgaaaatgagttttttcatgttgtgaat--ttttggtagtgtgtgtgagaggatgagaa 481  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  4996921 aaaggtggttccatttgaacatactagtgaaaagagaagaatgaaaatgagttttttcatgttgtgaatttttttggtagtgtgtgtgagaggatgagaa 4996822  T
Q  482 tgatcatg-ttttttgaaggggtgttaattttgtatttgtatagttgaagatgctgaagtttggtagtatgcgtcacacacttcttagtgattttcctcg 580  Q
    ||||| || ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  4996821 tgatcgtgtttttttgaaggggtgttaa-tttgtatttgtatagttgaagatgctaaagtttggtagtatgagtcacacacttcttagtgattttcctcg 4996723  T
Q  581 tgaataagtagaagctcctcttattcatgcatgaagatagagacagttcacaagattcactttagttgttgaacttgaagatagtaacaaaaaaggtctt 680  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4996722 tgaataagtagaagctcctcttattcatgcatgaagatagagacagttcacaagattcactttagttgttgaacttgaagatagtaacaaaaaaggtctt 4996623  T
Q  681 gnnnnnnnnngggattattatggagaaaagtgtgcaatcaatgatgaacggttggaaaaaggtttgaaagtggagggggaaacgtgattaagatttggat 780  Q
    |         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4996622 g--attttttgggattattatggagaaaagtgtgcaatcaatgatgaacggttggaaaaaggtttgaaagtggagggggaaacgtgattaagatttggat 4996525  T
Q  781 tcttttgaaaagttgaaaaagtgaatacttgaaagcaataagaattttgcatgagaaaccataagtgaagaacaagacacagccaaaggtagagtgtaa 879  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4996524 tcttttgaaaagttgaaaaagtgattacttgaaatcaataagaattttgcatgagaaaccataagtgaagaacaagacacagccaaaggtagagtgtaa 4996426  T

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