View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0543_low_10 (Length: 479)
Name: NF0543_low_10
Description: NF0543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0543_low_10 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 11 - 479
Target Start/End: Original strand, 4996055 - 4996536
Alignment:
| Q |
11 |
caaagggaacagaatctttccaaccattaacttttgtttcttttctttcaaaatctaccatgctgcattagtggttggaaattgaaatagattagagtac |
110 |
Q |
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| T |
4996055 |
caaagggaacagattctttccaaccattaacttttgtttcttttctttcaaaatctaccatgctgcattagtggttggaaattgaaatagattagagtac |
4996154 |
T |
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| Q |
111 |
ataaattaaatgtcattttcctttctttagaatgcaccattccttattctcctaagcaaaatattcttactgtagccacctat-------------taca |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4996155 |
ataaattaaatgtcattttcctttctttagaatgcaccattccttattctcctaagcaaaatattcttactgtagccacctatactatagctctattaca |
4996254 |
T |
|
| Q |
198 |
aaaatcacaaacaaagagacaataacatagtcaacatgttcatcaaatcatctccaaaatgtttcacatctctctctagtactatacaaatttcataggt |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4996255 |
aaaatcacaaacaaagagacaataacatagtcaacatgttcatcaaatcatctccaaaatgtttcacatctctctctagtactatacaaatttcataggt |
4996354 |
T |
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| Q |
298 |
tgtccaaatttcttaaccttatcctatccccaagaatgattcttcttctggaagtaataatgctttaccccttacactctacctttggctgtgtcttgtt |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4996355 |
tgtccaaatttcttaaccttatcctatccccaagaatgattcttcttctggaagtaataatgctttaccccttacactctacctttggctgtgtcttgtt |
4996454 |
T |
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| Q |
398 |
cttcacttatggtttctcatgcaaaattcttattgctttcaagtattcactttttcaacttttcaaaagaatccaaatctta |
479 |
Q |
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| T |
4996455 |
cttcacttatggtttctcatgcaaaattcttattgatttcaagtaatcactttttcaacttttcaaaagaatccaaatctta |
4996536 |
T |
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