View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0543_low_11 (Length: 468)
Name: NF0543_low_11
Description: NF0543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0543_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 76 - 460
Target Start/End: Complemental strand, 40854553 - 40854170
Alignment:
| Q |
76 |
aaaaattttataatagtatatgttttcgagaagtattagaaacattatttctaacactcactttttaagttttcacacacgtgtattcacattattcttt |
175 |
Q |
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| T |
40854553 |
aaaaattttataatagtatatgttttcgagaagtattagaaacattatttctaacactcactttttaagttttcacacacatgtattcacattattcttt |
40854454 |
T |
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| Q |
176 |
attctttttaaacaaaaaattgtatggtaataacgtttgataaatctgctccnnnnnnnnnnnncaagtttaatatacacttatataaacaaaaataatc |
275 |
Q |
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| T |
40854453 |
attctttttaaacaaaaaattgtatggtaataacgtttgataaatctgctccaaaaaaaaaaa-caagtttaatatacacttatataaacaaaaataatc |
40854355 |
T |
|
| Q |
276 |
aactttgttaagaaatggccattcatgaccacaatgcgtgaaaattttgatgcatgcgaatgaggtgctcaaagtacgatataatcaagaaaataaaatc |
375 |
Q |
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| T |
40854354 |
aactttgttaagaaatggccattcatgaccacaatgcgtgaaaattttgatgcatgcgaatgaggtgctcaaagtacgatataatcaagaaaataaaatc |
40854255 |
T |
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| Q |
376 |
ggtggccaagttaagctcataatggctcaccatgcaaatgaattgttggtttgttggaaaatgaattaatcgactgatctctgct |
460 |
Q |
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| T |
40854254 |
ggtggccaagttaagctcataatggctcaccatgcaaatgaattgttggtttgttggaaaatgaattaatcgactgatctctgct |
40854170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 29 - 84
Target Start/End: Complemental strand, 40854782 - 40854727
Alignment:
| Q |
29 |
aacattttcctttgcattattggtattgccttcacagttaagtctcaaaaaatttt |
84 |
Q |
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| T |
40854782 |
aacattttcctttgcattattggtattgccttcatagttaagtctctaaaaatttt |
40854727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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