View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0543_low_14 (Length: 415)
Name: NF0543_low_14
Description: NF0543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0543_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 28 - 409
Target Start/End: Complemental strand, 48454910 - 48454529
Alignment:
| Q |
28 |
gcaattggcgcccagtagaatttaattatttaccttaaattaccaaaatatttgattatgttatttcatccctggtgcgtatgatgtaacttcacgtttc |
127 |
Q |
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| T |
48454910 |
gcaattggcgcccagtagaatttaattatttaccttaaattaccaaaatatttgattatgttatttcatccctggtgcgtatgatgtaacttcacgtttc |
48454811 |
T |
|
| Q |
128 |
ttcacttcttggacattatacactgcttagaaccaatgtagctaattatttaatgacacacaacatacacagatttaattggttaaagaatttgagtgtt |
227 |
Q |
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| T |
48454810 |
ttcacttcttggacattatacactgcttagaaccaatgtagctaattatttaatgacacacaacatacacatatttaattggttaaagaatttgagtgtt |
48454711 |
T |
|
| Q |
228 |
caataaagtggttattgtttgattcagcaccgtatgtgacccgtatttgaatgtattccgtgggcttatcccccctcttggaggactggatctctctccc |
327 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
48454710 |
caataaagtggttattgtttgattcagcaccgtatgtgacccgtatttgaatgtattccgtgggcttatccccccccttggaggactggatctctctccc |
48454611 |
T |
|
| Q |
328 |
atcctagctttccttgttctgaataccttcactagcactgctgctgcactccctgctgagcttccagtcacagaataatcta |
409 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
48454610 |
atcctagctttccttgttctgaatgccttcactagcactgctgctgcactccctgctgagcttccagtcacagaacaatcta |
48454529 |
T |
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