View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0543_low_16 (Length: 411)
Name: NF0543_low_16
Description: NF0543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0543_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 32 - 359
Target Start/End: Original strand, 2592717 - 2593044
Alignment:
| Q |
32 |
aaccacaggtctgtcgtacacaaaaagcattttgactcactagtcaacacatgcatgtctaaaacaaatgtacaacctcctagaaattatgctttgcatt |
131 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2592717 |
aaccacaggtctgtcgtacacaaaaagcattttgactcaccagtcaacacatgcaagtctaaaacaaatgtacaacctcctagaaattatgctttgcatt |
2592816 |
T |
|
| Q |
132 |
aatgtttagtggcaaaacctaaacgccgaggagagaagaattgcaggttcgaactcacatcacaatgtatcaaatgatctagcaaccttataaaatctaa |
231 |
Q |
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||||||||||||||||||||||||| |||| |||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2592817 |
aatgtttagtggcaaaacctaaacggcgagaagagaagaattgtaggttcgaacttacatcacaatgtatcaaataatctagcaaccttataaaatctaa |
2592916 |
T |
|
| Q |
232 |
gccgcacttaaatgtactttacatttatcaaagttcaagagtagttgttgatgttttgacttcgaactcaaatatcacacgaataaatttagatgtgtgg |
331 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2592917 |
gccgcacttaaatgtactttaaatttatcaaagttcaagagtagttgttgatgttttgacttcgaactcaaatatcacacgaataaatttagatgtgtga |
2593016 |
T |
|
| Q |
332 |
aataaatatcaaaggcaaccaataacag |
359 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
2593017 |
aataaatatcaaaggcaaccaataacag |
2593044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 374 - 411
Target Start/End: Original strand, 2593125 - 2593162
Alignment:
| Q |
374 |
aggtaagagagcagagaaaatgagtaatacaaatatat |
411 |
Q |
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||||||||||||||||||||||||| |||||||||||| |
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| T |
2593125 |
aggtaagagagcagagaaaatgagtgatacaaatatat |
2593162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 293 - 329
Target Start/End: Original strand, 32576065 - 32576101
Alignment:
| Q |
293 |
tcgaactcaaatatcacacgaataaatttagatgtgt |
329 |
Q |
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|||||||||||| |||||| ||||||||||||||||| |
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| T |
32576065 |
tcgaactcaaatctcacactaataaatttagatgtgt |
32576101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 342
Target Start/End: Original strand, 13241978 - 13242024
Alignment:
| Q |
296 |
aactcaaatatcacacgaataaatttagatgtgtggaataaatatca |
342 |
Q |
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|||||||||||||||| || ||| ||||||||||||||||| ||||| |
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| T |
13241978 |
aactcaaatatcacactaaaaaacttagatgtgtggaataagtatca |
13242024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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