View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0543_low_17 (Length: 390)
Name: NF0543_low_17
Description: NF0543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0543_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 94 - 362
Target Start/End: Original strand, 37091148 - 37091413
Alignment:
| Q |
94 |
cacacacacatagaataacaaattaattagtagtagtaatttttgttaccttcagcaaaagtgcttgatgatggcaaggcttgagaaacaaccaagatat |
193 |
Q |
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| T |
37091148 |
cacacacacatagaataacaaattaattagtagtagtaatttttgttaccttcagaaaaagtgcttgatgatggcaaggcttgagaaacaaccaagatat |
37091247 |
T |
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| Q |
194 |
ctcccttgctaagaaccaagtacacccagaaagacnnnnnnnnnnccacatacatgaaatttagagcatataagggaatattattgagtgatatgaagat |
293 |
Q |
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| T |
37091248 |
ctcccttgctaagaaccaagtacacccagaaagac---aaaaaaaccacatacatgaaatttagagcatataagggaatattattgagtgatatgaagat |
37091344 |
T |
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| Q |
294 |
aataaatatgagtgtaacattattgttgaggaacaaagtgcaatatatagatggggaccagttataact |
362 |
Q |
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| T |
37091345 |
aataaatatgagtgtaacattattgttgaggaacaaagtgcaatatatagatggggaccagttataact |
37091413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 123 - 362
Target Start/End: Original strand, 37097515 - 37097745
Alignment:
| Q |
123 |
gtagtagtaatttttgttaccttcagcaaaagtgcttgatgatggcaaggcttgagaaacaaccaagatatctcccttgctaagaaccaagtacacccag |
222 |
Q |
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| T |
37097515 |
gtagtagtaatttttgctaccttgttcaaaagtgcttgatgatggcaagacttgagaaacaaccaagatgtctccattgctaag-------tagacccaa |
37097607 |
T |
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| Q |
223 |
aaagacnnnnnnnnnnccacatacatgaaatttagagcatataagggaatattattgagtgatatgaagataataaatatgagtgtaacattattgttga |
322 |
Q |
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| T |
37097608 |
aaagaccaaaaatcacatgcattaacgaaatttagaacataggag--aatattattgagtgacatgaagataataaatatgagtgtaacattattgttga |
37097705 |
T |
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| Q |
323 |
ggaacaaagtgcaatatatagatggggaccagttataact |
362 |
Q |
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| T |
37097706 |
ggaacaaagtgcaatatatagatggggaccagttataact |
37097745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 37091060 - 37091118
Alignment:
| Q |
14 |
atatctcatctacatacatatatgagaactaactataattaaaccatgctcacaaagca |
72 |
Q |
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| T |
37091060 |
atatctcatctacatacatatatgagaactaactataattaaaccatgctcacaaagca |
37091118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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