View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0543_low_18 (Length: 387)

Name: NF0543_low_18
Description: NF0543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0543_low_18
NF0543_low_18
[»] chr7 (29 HSPs)
chr7 (1-376)||(45263794-45264169)
chr7 (146-216)||(38500057-38500127)
chr7 (133-214)||(33128620-33128701)
chr7 (78-211)||(46078013-46078144)
chr7 (31-219)||(119767-119954)
chr7 (29-102)||(43694594-43694667)
chr7 (60-104)||(30570986-30571030)
chr7 (156-208)||(46139821-46139873)
chr7 (31-94)||(4970819-4970882)
chr7 (156-211)||(27863846-27863901)
chr7 (136-203)||(33552940-33553007)
chr7 (125-211)||(9210494-9210580)
chr7 (156-206)||(18865199-18865249)
chr7 (125-207)||(21568746-21568828)
chr7 (146-204)||(28900760-28900818)
chr7 (32-102)||(46280299-46280369)
chr7 (68-117)||(39279721-39279770)
chr7 (146-214)||(40196240-40196308)
chr7 (176-212)||(40377997-40378033)
chr7 (62-117)||(30180009-30180064)
chr7 (54-117)||(44216824-44216887)
chr7 (129-208)||(46280381-46280460)
chr7 (63-117)||(34083583-34083637)
chr7 (68-117)||(11700329-11700378)
chr7 (78-106)||(17944416-17944444)
chr7 (176-208)||(28210324-28210356)
chr7 (147-207)||(36517485-36517545)
chr7 (63-111)||(37064522-37064570)
chr7 (60-100)||(38639989-38640029)
[»] chr3 (27 HSPs)
chr3 (70-206)||(30956691-30956825)
chr3 (70-206)||(30972503-30972637)
chr3 (29-213)||(35959480-35959662)
chr3 (29-212)||(20880342-20880522)
chr3 (31-112)||(36189529-36189610)
chr3 (125-217)||(944353-944447)
chr3 (70-208)||(53789526-53789662)
chr3 (125-205)||(2719341-2719421)
chr3 (29-117)||(21335633-21335721)
chr3 (70-211)||(24684888-24685027)
chr3 (29-110)||(30443858-30443939)
chr3 (156-204)||(34610945-34610993)
chr3 (29-101)||(36631075-36631147)
chr3 (128-209)||(139794-139875)
chr3 (146-211)||(34034037-34034102)
chr3 (129-205)||(1508703-1508779)
chr3 (61-211)||(20170389-20170537)
chr3 (30-117)||(37689191-37689275)
chr3 (156-208)||(46886836-46886888)
chr3 (63-110)||(14145877-14145924)
chr3 (146-217)||(47132237-47132308)
chr3 (70-104)||(20257506-20257540)
chr3 (146-200)||(28240213-28240267)
chr3 (71-112)||(849625-849666)
chr3 (146-211)||(20257426-20257491)
chr3 (176-208)||(849551-849583)
chr3 (151-203)||(25447378-25447430)
[»] chr5 (26 HSPs)
chr5 (80-211)||(3735566-3735695)
chr5 (125-205)||(7319129-7319209)
chr5 (63-211)||(32372490-32372636)
chr5 (29-112)||(16937907-16937990)
chr5 (158-207)||(12433521-12433570)
chr5 (125-206)||(12554334-12554415)
chr5 (125-216)||(25461873-25461964)
chr5 (125-206)||(40439073-40439153)
chr5 (146-210)||(16938006-16938070)
chr5 (125-209)||(32941339-32941422)
chr5 (151-207)||(40426632-40426688)
chr5 (156-211)||(7706128-7706183)
chr5 (156-207)||(13697908-13697959)
chr5 (136-207)||(28776855-28776926)
chr5 (161-208)||(42100198-42100245)
chr5 (146-208)||(9202877-9202939)
chr5 (63-117)||(12425529-12425583)
chr5 (156-206)||(24030551-24030601)
chr5 (158-216)||(29529801-29529859)
chr5 (146-208)||(32703577-32703639)
chr5 (79-112)||(465917-465950)
chr5 (60-113)||(34102369-34102422)
chr5 (63-112)||(34736302-34736351)
chr5 (60-100)||(12554494-12554534)
chr5 (72-112)||(30585496-30585536)
chr5 (156-212)||(39477826-39477882)
[»] chr2 (37 HSPs)
chr2 (60-208)||(41407170-41407317)
chr2 (63-207)||(12464531-12464673)
chr2 (77-173)||(42868533-42868627)
chr2 (70-211)||(42659216-42659355)
chr2 (70-173)||(41241197-41241298)
chr2 (125-208)||(11863800-11863883)
chr2 (29-210)||(15757682-15757869)
chr2 (30-201)||(32592463-32592631)
chr2 (70-204)||(41851408-41851540)
chr2 (157-208)||(4606860-4606911)
chr2 (128-206)||(38010283-38010361)
chr2 (146-208)||(39659647-39659709)
chr2 (62-205)||(12795664-12795805)
chr2 (78-173)||(31561826-31561919)
chr2 (156-208)||(26143779-26143831)
chr2 (60-112)||(39073744-39073796)
chr2 (157-208)||(41880642-41880694)
chr2 (156-211)||(1633695-1633750)
chr2 (63-117)||(9395088-9395142)
chr2 (151-217)||(27695731-27695797)
chr2 (176-210)||(43036507-43036541)
chr2 (35-112)||(2416276-2416353)
chr2 (126-199)||(3311922-3311995)
chr2 (79-112)||(36114597-36114630)
chr2 (78-111)||(38916379-38916412)
chr2 (151-208)||(42457827-42457884)
chr2 (176-208)||(7043881-7043913)
chr2 (167-211)||(21827948-21827992)
chr2 (156-204)||(26626759-26626807)
chr2 (162-206)||(27316943-27316987)
chr2 (183-211)||(33319996-33320024)
chr2 (80-112)||(36114382-36114414)
chr2 (151-211)||(36285248-36285308)
chr2 (147-207)||(36534668-36534728)
chr2 (136-208)||(40682492-40682564)
chr2 (70-110)||(41407040-41407080)
chr2 (183-211)||(41812250-41812278)
[»] chr8 (18 HSPs)
chr8 (63-211)||(1058132-1058278)
chr8 (125-217)||(14956413-14956505)
chr8 (30-104)||(26771236-26771310)
chr8 (137-216)||(34236033-34236112)
chr8 (125-207)||(36963463-36963545)
chr8 (80-211)||(35534686-35534813)
chr8 (63-117)||(29205766-29205820)
chr8 (68-117)||(12497294-12497343)
chr8 (151-208)||(40980999-40981056)
chr8 (136-208)||(26215375-26215447)
chr8 (29-104)||(18133627-18133702)
chr8 (156-207)||(29819029-29819080)
chr8 (70-104)||(10758321-10758355)
chr8 (177-211)||(18133552-18133586)
chr8 (71-104)||(7646177-7646210)
chr8 (63-104)||(37353307-37353348)
chr8 (176-216)||(22790501-22790541)
chr8 (60-112)||(38602296-38602348)
[»] chr1 (37 HSPs)
chr1 (125-211)||(37473265-37473351)
chr1 (136-216)||(22343949-22344029)
chr1 (60-210)||(41505554-41505701)
chr1 (125-212)||(5720846-5720933)
chr1 (125-212)||(5741527-5741614)
chr1 (80-208)||(14331658-14331784)
chr1 (129-211)||(41195316-41195398)
chr1 (41-211)||(14576689-14576857)
chr1 (147-207)||(47498973-47499033)
chr1 (70-206)||(51688576-51688710)
chr1 (146-207)||(473036-473097)
chr1 (60-113)||(4613951-4614004)
chr1 (147-208)||(27820470-27820531)
chr1 (60-117)||(30582003-30582060)
chr1 (136-208)||(5894282-5894354)
chr1 (135-211)||(33541836-33541912)
chr1 (29-112)||(13809961-13810044)
chr1 (70-117)||(15477536-15477583)
chr1 (125-216)||(17727213-17727304)
chr1 (63-110)||(24915109-24915156)
chr1 (70-117)||(30581760-30581807)
chr1 (70-117)||(47432054-47432101)
chr1 (63-104)||(34405128-34405169)
chr1 (126-211)||(38247320-38247404)
chr1 (161-206)||(46423151-46423196)
chr1 (125-208)||(2294982-2295056)
chr1 (30-97)||(3234040-3234107)
chr1 (125-211)||(3234141-3234227)
chr1 (78-112)||(8081850-8081884)
chr1 (30-104)||(17603409-17603483)
chr1 (42-104)||(37517231-37517293)
chr1 (66-112)||(51190824-51190870)
chr1 (28-117)||(7862036-7862125)
chr1 (154-207)||(24562450-24562503)
chr1 (30-102)||(2294884-2294956)
chr1 (30-96)||(2295078-2295141)
chr1 (69-117)||(9572172-9572220)
[»] chr6 (16 HSPs)
chr6 (74-216)||(8147566-8147703)
chr6 (70-208)||(24626164-24626300)
chr6 (128-217)||(6538377-6538466)
chr6 (136-208)||(35069431-35069503)
chr6 (125-211)||(34430582-34430668)
chr6 (60-117)||(4163133-4163190)
chr6 (60-117)||(4224754-4224811)
chr6 (63-112)||(2735032-2735081)
chr6 (29-112)||(9093580-9093663)
chr6 (125-211)||(30926406-30926490)
chr6 (70-104)||(6909937-6909971)
chr6 (66-112)||(32206081-32206127)
chr6 (79-112)||(28621184-28621217)
chr6 (81-113)||(430452-430484)
chr6 (137-217)||(847928-848008)
chr6 (125-173)||(29754197-29754245)
[»] chr4 (28 HSPs)
chr4 (70-216)||(50681154-50681298)
chr4 (136-206)||(44863081-44863151)
chr4 (29-107)||(53294138-53294216)
chr4 (84-214)||(43505821-43505947)
chr4 (60-112)||(26520284-26520336)
chr4 (159-211)||(45935365-45935417)
chr4 (156-216)||(50662871-50662931)
chr4 (41-112)||(20108972-20109043)
chr4 (149-207)||(27025-27083)
chr4 (126-207)||(17204008-17204089)
chr4 (60-117)||(25332732-25332789)
chr4 (63-207)||(25904268-25904414)
chr4 (157-210)||(44797759-44797812)
chr4 (31-114)||(9760401-9760484)
chr4 (62-117)||(19494872-19494927)
chr4 (125-211)||(24169127-24169213)
chr4 (63-117)||(51630069-51630123)
chr4 (156-213)||(437379-437436)
chr4 (151-204)||(3155486-3155539)
chr4 (79-112)||(17884031-17884064)
chr4 (63-104)||(28300357-28300398)
chr4 (169-214)||(34213730-34213775)
chr4 (78-111)||(41336724-41336757)
chr4 (60-117)||(42404053-42404110)
chr4 (71-112)||(54069483-54069524)
chr4 (63-104)||(54392877-54392918)
chr4 (81-117)||(3155561-3155597)
chr4 (158-206)||(47119086-47119134)
[»] scaffold0018 (1 HSPs)
scaffold0018 (125-211)||(157973-158059)


Alignment Details
Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 45264169 - 45263794
Alignment:
Q  1 ttatgacaaagttcacgagnnnnnnncggcttattttcctaagttctctgatatatatcataaaaatagcttatagaatatacaaaaacaatttaacttt 100  Q
    |||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  45264169 ttatgacaaagttcacgagtttttttcggcttattttcctaagttctctgatatatatcataaaaatagcttatagcatatacaaaaacaatttaacttt 45264070  T
Q  101 atttcatctttttctatnnnnnnntagcttatgtaagcttatgcgtaagcgcttttcatgataagcgcttgtgtgataagccgcaaataagttgtttatc 200  Q
    |||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45264069 atttcatctttttctataaaaaaatagcttatgtaagcttatgcgtaagcgcttttcatgataagcgcttgtgtgataagccgcaaataagttgtttatc 45263970  T
Q  201 caaacaggcccatagtagttgtttatctgttttagatatttttgtcaaagaaataattttcataatatatgattttaggtgggagatttgtttctttttc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45263969 caaacaggcccatagtagttgtttatctgttttagatatttttgtcaaagaaataattttcataatatatgattttaggtgggagatttgtttctttttc 45263870  T
Q  301 ttcttcataaaacaatgcagaaagcattttccctccttaaaacaaaggagggacttttcctttggttaccgtctct 376  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45263869 ttcttcataaaacaatgcagaaagcattttccctccttaaaacaaaggagggacttttcctttggttaccgtctct 45263794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 146 - 216
Target Start/End: Original strand, 38500057 - 38500127
Alignment:
Q  146 taagcgcttttcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacaggcccatagt 216  Q
    ||||||||| ||||||||||||||||||  |||| | ||||||||| |||||||| |||||||||||||||    
T  38500057 taagcgcttatcatgataagcgcttgtgctataaactgcaaataagctgtttatctaaacaggcccatagt 38500127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 133 - 214
Target Start/End: Complemental strand, 33128701 - 33128620
Alignment:
Q  133 gtaagcttatgcgtaagcgcttttcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacaggcccata 214  Q
    |||||||||||| ||||| ||| |||||||||| | |||||   ||||| ||||||||| ||||||||||||||||||||||    
T  33128701 gtaagcttatgcataagcacttatcatgataagtgtttgtgctgtaagctgcaaataagctgtttatccaaacaggcccata 33128620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 211
Target Start/End: Complemental strand, 46078144 - 46078013
Alignment:
Q  78 atatacaaaaacaatttaactttatttcatctttttctatnnnnnnntagcttatgtaagcttatgcgtaagcgcttttcatgataagcgcttgtgtgat 177  Q
    ||||||||||||||||||||||| ||| ||||||||||||       || ||||||||||||||| | ||||||||| |||||||| | | |||||   |    
T  46078144 atatacaaaaacaatttaactttgttttatctttttctat--aaaaataacttatgtaagcttatacataagcgcttatcatgatatgtgtttgtgcttt 46078047  T
Q  178 aagccgcaaataagttgtttatccaaacaggccc 211  Q
    |||  ||| ||||| ||||| |||||||||||||    
T  46078046 aagttgcatataagctgtttgtccaaacaggccc 46078013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 219
Target Start/End: Complemental strand, 119954 - 119767
Alignment:
Q  31 ttattttcctaagttctctgatatatatcataaaaatagcttatagaatatacaaaaacaatttaactttatttcatctttttctatnnnnnnntagctt 130  Q
    ||||||||  ||||||||| || ||  | ||||||| | ||||||| || |||| ||||||||||||||||||| ||||||| || |       ||||||    
T  119954 ttattttcacaagttctctaatgtaacttataaaaacaacttatagcatttacacaaacaatttaactttattttatcttttcctgtagaaa--tagctt 119857  T
Q  131 atgtaagcttatgcgtaagcgcttttcatgataagcgcttgtgtg--ataagccgcaaataagttgtttatccaaacaggcccatagtagt 219  Q
    ||||||| |||||| || | | || |||||||||| |  ||||||  |||||| ||| ||||| | |||||||||||||||||||||||||    
T  119856 atgtaaggttatgcata-gtgtttgtcatgataagtgtgtgtgtgctataagctgcagataagctttttatccaaacaggcccatagtagt 119767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 43694594 - 43694667
Alignment:
Q  29 gcttattttcctaagttctctgatatatatcataaaaatagcttatagaatatacaaaaacaatttaactttat 102  Q
    |||||||||| ||||||||  ||||||  | ||||||| ||||||||| ||||||||||||||||||| |||||    
T  43694594 gcttattttcataagttcttcgatatagcttataaaaacagcttatagcatatacaaaaacaatttaaatttat 43694667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 30570986 - 30571030
Alignment:
Q  60 ataaaaatagcttatagaatatacaaaaacaatttaactttattt 104  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||    
T  30570986 ataaaaatagcttatagcatatacaaaaataatttaactttattt 30571030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 156 - 208
Target Start/End: Complemental strand, 46139873 - 46139821
Alignment:
Q  156 tcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacagg 208  Q
    |||||||||| |||||||| |||||| |||||||||||||||| |||||||||    
T  46139873 tcatgataagtgcttgtgttataagctgcaaataagttgtttaaccaaacagg 46139821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 31 - 94
Target Start/End: Original strand, 4970819 - 4970882
Alignment:
Q  31 ttattttcctaagttctctgatatatatcataaaaatagcttatagaatatacaaaaacaattt 94  Q
    |||||||| |||||||||| |||||| | ||||||| | ||||||| |||||||||||||||||    
T  4970819 ttattttcataagttctctaatatatcttataaaaagaacttatagcatatacaaaaacaattt 4970882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 156 - 211
Target Start/End: Original strand, 27863846 - 27863901
Alignment:
Q  156 tcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacaggccc 211  Q
    ||||||||||| ||||||  ||||||  ||||||||||||||||||||||||||||    
T  27863846 tcatgataagcacttgtgctataagctacaaataagttgtttatccaaacaggccc 27863901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 136 - 203
Target Start/End: Original strand, 33552940 - 33553007
Alignment:
Q  136 agcttatgcgtaagcgcttttcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaa 203  Q
    ||||||| | ||||||||| ||||| |||| |||||||  |||||| |||||||||||||||||||||    
T  33552940 agcttatacataagcgcttatcatggtaagtgcttgtgcaataagctgcaaataagttgtttatccaa 33553007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 211
Target Start/End: Complemental strand, 9210580 - 9210494
Alignment:
Q  125 tagcttatgtaagcttatgcgtaagcgcttttcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacaggccc 211  Q
    ||||||||| |||||||| | |||||| || |||||||||  | ||| |  |||||| ||||||||| |||||||||||||||||||    
T  9210580 tagcttatgcaagcttatacataagcgattatcatgataaatgtttgcgctataagctgcaaataagctgtttatccaaacaggccc 9210494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 206
Target Start/End: Original strand, 18865199 - 18865249
Alignment:
Q  156 tcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaaca 206  Q
    |||||||||||| |||||  |||||| ||||||||||||||||||||||||    
T  18865199 tcatgataagcgtttgtgctataagctgcaaataagttgtttatccaaaca 18865249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 207
Target Start/End: Original strand, 21568746 - 21568828
Alignment:
Q  125 tagcttatgtaagcttatgcgtaagcgcttttcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacag 207  Q
    ||||||||| |||||||| | |||| |||| ||||||||||| ||| ||  |||||| ||||| ||| |||||||||||||||    
T  21568746 tagcttatgcaagcttatacataagtgcttatcatgataagcacttatgctataagctgcaaacaagctgtttatccaaacag 21568828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 204
Target Start/End: Complemental strand, 28900818 - 28900760
Alignment:
Q  146 taagcgcttttcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaa 204  Q
    ||||||||| |||| ||||  |||||||| |||||| ||||||||||||||||||||||    
T  28900818 taagcgcttatcataataaatgcttgtgttataagctgcaaataagttgtttatccaaa 28900760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 102
Target Start/End: Original strand, 46280299 - 46280369
Alignment:
Q  32 tattttcctaagttctctgatatatatcataaaaatagcttatagaatatacaaaaacaatttaactttat 102  Q
    ||||||| |||||||||  |||||  | ||||||| ||||||||| ||||||||||||||||||| |||||    
T  46280299 tattttcataagttctccaatatagcttataaaaacagcttatagcatatacaaaaacaatttaaatttat 46280369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 68 - 117
Target Start/End: Complemental strand, 39279770 - 39279721
Alignment:
Q  68 agcttatagaatatacaaaaacaatttaactttatttcatctttttctat 117  Q
    |||||||||||||||||||| |||||||||||| ||| ||||||| ||||    
T  39279770 agcttatagaatatacaaaagcaatttaactttgttttatcttttgctat 39279721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 40196308 - 40196240
Alignment:
Q  146 taagcgcttttcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacaggcccata 214  Q
    ||||||||| ||||||||||||| ||||   ||| |  ||||||||||||||||||||||| |||||||    
T  40196308 taagcgcttatcatgataagcgcatgtgctgtaaactacaaataagttgtttatccaaacaagcccata 40196240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 212
Target Start/End: Original strand, 40377997 - 40378033
Alignment:
Q  176 ataagccgcaaataagttgtttatccaaacaggccca 212  Q
    |||||| ||||||||||||||||||||||||||||||    
T  40377997 ataagctgcaaataagttgtttatccaaacaggccca 40378033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 62 - 117
Target Start/End: Complemental strand, 30180064 - 30180009
Alignment:
Q  62 aaaaatagcttatagaatatacaaaaacaatttaactttatttcatctttttctat 117  Q
    ||||| |||||||||  ||||| |||||||||||||||||||| ||||||| ||||    
T  30180064 aaaaacagcttatagcttatacgaaaacaatttaactttattttatcttttgctat 30180009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 54 - 117
Target Start/End: Original strand, 44216824 - 44216887
Alignment:
Q  54 tatatcataaaaatagcttatagaatatacaaaaacaatttaactttatttcatctttttctat 117  Q
    |||| |||||||||||| ||||| |||| ||||||  |||||||||||||| ||||||| ||||    
T  44216824 tataccataaaaatagcctatagcatatccaaaaattatttaactttattttatcttttgctat 44216887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 129 - 208
Target Start/End: Original strand, 46280381 - 46280460
Alignment:
Q  129 ttatgtaagcttatgcgtaagcgcttttcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacagg 208  Q
    |||||||||||||||| | || |||| ||||||||| ||||||||  ||||||   ||||||  ||||||||||||||||    
T  46280381 ttatgtaagcttatgcatgagtgcttatcatgataaacgcttgtgctataagctataaataaactgtttatccaaacagg 46280460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 117
Target Start/End: Original strand, 34083583 - 34083637
Alignment:
Q  63 aaaatagcttatagaatatacaaaaacaatttaactttatttcatctttttctat 117  Q
    |||| |||||||||  |||||| ||||||||||||||||||| ||||||| ||||    
T  34083583 aaaacagcttatagcttatacacaaacaatttaactttattttatcttttgctat 34083637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 117
Target Start/End: Original strand, 11700329 - 11700378
Alignment:
Q  68 agcttatagaatatacaaaaacaatttaactttatttcatctttttctat 117  Q
    ||||||| | ||||| ||||||||| ||||||||||| ||||||||||||    
T  11700329 agcttattgcatatataaaaacaatgtaactttattttatctttttctat 11700378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 106
Target Start/End: Original strand, 17944416 - 17944444
Alignment:
Q  78 atatacaaaaacaatttaactttatttca 106  Q
    |||||||||||||||||||||||||||||    
T  17944416 atatacaaaaacaatttaactttatttca 17944444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 28210356 - 28210324
Alignment:
Q  176 ataagccgcaaataagttgtttatccaaacagg 208  Q
    |||||| ||||||||||||||||||||||||||    
T  28210356 ataagctgcaaataagttgtttatccaaacagg 28210324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 207
Target Start/End: Complemental strand, 36517545 - 36517485
Alignment:
Q  147 aagcgcttttcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacag 207  Q
    |||| ||| |||||||||| ||| |||| |||||  ||||||||||||||||| |||||||    
T  36517545 aagcacttatcatgataagtgctagtgttataagttgcaaataagttgtttattcaaacag 36517485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 37064522 - 37064570
Alignment:
Q  63 aaaatagcttatagaatatacaaaaacaatttaactttatttcatcttt 111  Q
    |||| ||||||||| ||||  ||||||||||||||| ||||||||||||    
T  37064522 aaaacagcttatagcatatgtaaaaacaatttaactgtatttcatcttt 37064570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 100
Target Start/End: Complemental strand, 38640029 - 38639989
Alignment:
Q  60 ataaaaatagcttatagaatatacaaaaacaatttaacttt 100  Q
    ||||||||| ||||||| ||||| |||||||||||||||||    
T  38640029 ataaaaataacttatagtatataaaaaaacaatttaacttt 38639989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 7e-25; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 70 - 206
Target Start/End: Original strand, 30956691 - 30956825
Alignment:
Q  70 cttatagaatatacaaaaacaatttaactttatttcatctttttctatnnnnnnntagcttatgtaagcttatgcgtaagcgcttttcatgataagcgct 169  Q
    |||||||  |||||||||||||||||||||||||| ||||||| ||||       |||||||||||||||||||| |||  |||| ||||||||||| ||    
T  30956691 cttatagcctatacaaaaacaatttaactttattttatcttttgctatagaaa--tagcttatgtaagcttatgcataaatgcttatcatgataagccct 30956788  T
Q  170 tgtgtgataagccgcaaataagttgtttatccaaaca 206  Q
    ||||  |||||| ||||||||| ||||||||||||||    
T  30956789 tgtgctataagctgcaaataagctgtttatccaaaca 30956825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 70 - 206
Target Start/End: Original strand, 30972503 - 30972637
Alignment:
Q  70 cttatagaatatacaaaaacaatttaactttatttcatctttttctatnnnnnnntagcttatgtaagcttatgcgtaagcgcttttcatgataagcgct 169  Q
    |||||||  |||||||||||||||||||||||||| ||||||| ||||       |||||||||||||||||||| |||  |||| ||||||||||| ||    
T  30972503 cttatagcctatacaaaaacaatttaactttattttatcttttgctatagaaa--tagcttatgtaagcttatgcataaatgcttatcatgataagccct 30972600  T
Q  170 tgtgtgataagccgcaaataagttgtttatccaaaca 206  Q
    ||||  |||||| ||||||||| ||||||||||||||    
T  30972601 tgtgctataagctgcaaataagctgtttatccaaaca 30972637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 29 - 213
Target Start/End: Original strand, 35959480 - 35959662
Alignment:
Q  29 gcttattttcctaagttctctgatatatatcataaaaatagcttatagaatatacaaaaacaatttaactttatttcatctttttctatnnnnnnntagc 128  Q
    ||||||||||  || |||||| |||||  | ||| ||| | |||| || ||||||||||| ||||||||||||||| ||| ||||||||       ||||    
T  35959480 gcttattttcaaaaattctctaatatagcttatagaaacaacttacagcatatacaaaaataatttaactttattttatccttttctatagaaa--tagc 35959577  T
Q  129 ttatgtaagcttatgcgtaagcgcttttcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacaggcccat 213  Q
    |||||| ||||||| | ||||| ||| |||||||||| |||||||  |||||| ||||||||| |||||||||||||| ||||||    
T  35959578 ttatgtgagcttatacataagctcttatcatgataagagcttgtgatataagctgcaaataagctgtttatccaaacaagcccat 35959662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 29 - 212
Target Start/End: Complemental strand, 20880522 - 20880342
Alignment:
Q  29 gcttattttcctaagttctctgatatatatcataaaaatagcttatagaatatacaaaaacaatttaactttatttcatctttttctatnnnnnnntagc 128  Q
    |||||||||| |||||||||  |||||  |  |||||| || |||||| ||||||||||||||||||||||  ||| ||| ||| ||||       ||||    
T  20880522 gcttattttcataagttctccaatatagcttttaaaaacagtttatagcatatacaaaaacaatttaacttgtttt-atcatttgctataaaaa--tagc 20880426  T
Q  129 ttatgtaagcttatgcgtaagcgcttttcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacaggccca 212  Q
    |||||||||||||| | ||||| ||| | ||||||| ||||||||  |||| | ||||||||||||| ||||||||||||||||    
T  20880425 ttatgtaagcttatacataagcacttattatgataaccgcttgtgctataaactgcaaataagttgtctatccaaacaggccca 20880342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 31 - 112
Target Start/End: Complemental strand, 36189610 - 36189529
Alignment:
Q  31 ttattttcctaagttctctgatatatatcataaaaatagcttatagaatatacaaaaacaatttaactttatttcatctttt 112  Q
    |||||||| |||||||||  |||||| | ||||||||||||||||  ||||||||||||||||||||||||||| |||||||    
T  36189610 ttattttcataagttctccaatatatcttataaaaatagcttatatcatatacaaaaacaatttaactttattttatctttt 36189529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 125 - 217
Target Start/End: Complemental strand, 944447 - 944353
Alignment:
Q  125 tagcttatgtaagcttatgcgtaagc-gcttttcatgataagcgctt-gtgtgataagccgcaaataagttgtttatccaaacaggcccatagta 217  Q
    ||||||||| |||||||| ||||||| |||| ||||||||||| ||| |||| |||||| ||||||||||||||||||||||||| ||| |||||    
T  944447 tagcttatgcaagcttatacgtaagccgcttatcatgataagcacttagtgttataagctgcaaataagttgtttatccaaacagacccctagta 944353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 70 - 208
Target Start/End: Original strand, 53789526 - 53789662
Alignment:
Q  70 cttatagaatatacaaaaacaatttaactttatttcatctttttctatnnnnnnntagcttatgtaagcttatgcgtaagcgcttttcatgataagcgct 169  Q
    ||||||| |||||| |||||| ||||| |||| |||||||||| ||||       |||||||||||||||||  | |||| |||| ||||||||||||||    
T  53789526 cttatagcatataccaaaacattttaattttagttcatcttttcctatagaaa--tagcttatgtaagcttacacataagtgcttatcatgataagcgct 53789623  T
Q  170 tgtgtgataagccgcaaataagttgtttatccaaacagg 208  Q
    ||||  |||||| |||| ||||| ||||| |||||||||    
T  53789624 tgtggcataagctgcaattaagtcgtttacccaaacagg 53789662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 125 - 205
Target Start/End: Complemental strand, 2719421 - 2719341
Alignment:
Q  125 tagcttatgtaagcttatgcgtaagcgcttttcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaac 205  Q
    |||||| |||||||||||||||||| |||| |||||||||||| |||||  |||||| | ||||||| ||||||| |||||    
T  2719421 tagcttgtgtaagcttatgcgtaagtgcttatcatgataagcgtttgtgctataagctgtaaataagctgtttattcaaac 2719341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 29 - 117
Target Start/End: Complemental strand, 21335721 - 21335633
Alignment:
Q  29 gcttattttcctaagttctctgatatatatcataaaaatagcttatagaatatacaaaaacaatttaactttatttcatctttttctat 117  Q
    |||||||||| ||||||||||  ||||  | || |||| |||||| ||||||||||||||||| | |||||||||| ||||||||||||    
T  21335721 gcttattttcataagttctctagtatagcttatgaaaacagcttacagaatatacaaaaacaactaaactttattttatctttttctat 21335633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 70 - 211
Target Start/End: Original strand, 24684888 - 24685027
Alignment:
Q  70 cttatagaatatacaaaaacaatttaactttatttcatctttttctatnnnnnnntagcttatgtaagcttatgcgtaagcgcttttcatgataagcgct 169  Q
    ||||||| |||||||||||||||| || ||||||| ||||||||||||       |||||||||||| |||||||  |||||||| ||||||| ||   |    
T  24684888 cttatagcatatacaaaaacaattaaaatttattttatctttttctat--aaaaatagcttatgtaaacttatgcaaaagcgcttatcatgatgagaatt 24684985  T
Q  170 tgtgtgataagccgcaaataagttgtttatccaaacaggccc 211  Q
    ||||  |||||| ||||||||   || |||||||||||||||    
T  24684986 tgtgctataagctgcaaataaaccgtctatccaaacaggccc 24685027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 110
Target Start/End: Complemental strand, 30443939 - 30443858
Alignment:
Q  29 gcttattttcctaagttctctgatatatatcataaaaatagcttatagaatatacaaaaacaatttaactttatttcatctt 110  Q
    |||||||||| |||||||||  |||||  | ||||||| ||||||||| |||||||||| ||||||||||| |||| |||||    
T  30443939 gcttattttcataagttctccaatatagtttataaaaacagcttatagcatatacaaaagcaatttaacttcattttatctt 30443858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 34610945 - 34610993
Alignment:
Q  156 tcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaa 204  Q
    ||||||||||||||||||| |||||| ||| ||||||||||||||||||    
T  34610945 tcatgataagcgcttgtgttataagctgcagataagttgtttatccaaa 34610993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 29 - 101
Target Start/End: Original strand, 36631075 - 36631147
Alignment:
Q  29 gcttattttcctaagttctctgatatatatcataaaaatagcttatagaatatacaaaaacaatttaacttta 101  Q
    |||||||||| |||||||||  |||||  ||||||||| | ||||||| || |||||||||||||||||||||    
T  36631075 gcttattttcataagttctccaatatagctcataaaaacaacttatagcatgtacaaaaacaatttaacttta 36631147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 128 - 209
Target Start/End: Original strand, 139794 - 139875
Alignment:
Q  128 cttatgtaagcttatgcgtaagcgcttttcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacaggc 209  Q
    ||||||||||||||||| ||||||||| |||||||||| || ||    ||||||  |||||||||||  |||||||||||||    
T  139794 cttatgtaagcttatgcataagcgcttatcatgataagtgcctgcactataagctccaaataagttgcgtatccaaacaggc 139875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 146 - 211
Target Start/End: Complemental strand, 34034102 - 34034037
Alignment:
Q  146 taagcgcttttcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacaggccc 211  Q
    |||| |||| ||||||||||||| |||   |||||| | |||||||||||||||||||||||||||    
T  34034102 taagtgcttatcatgataagcgcctgttctataagctgaaaataagttgtttatccaaacaggccc 34034037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 205
Target Start/End: Original strand, 1508703 - 1508779
Alignment:
Q  129 ttatgtaagcttatgcgtaagcgcttttcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaac 205  Q
    ||||| |||||||| | ||||||||| ||||||||||| ||||||  |||||  ||||||||| ||||| |||||||    
T  1508703 ttatgcaagcttatacataagcgcttatcatgataagcacttgtgctataagttgcaaataagctgtttttccaaac 1508779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 211
Target Start/End: Complemental strand, 20170537 - 20170389
Alignment:
Q  61 taaaaatagcttatagaatatacaaaaacaatttaactttatttcatctttttctatnnnnnnntagcttatgtaagcttatgcgtaagcgcttttcatg 160  Q
    |||||| | ||||||| |||||||||||||||||||| |||||| ||||||| |  |       |||||| || ||||| || | ||||||||| |||||    
T  20170537 taaaaacaacttatagcatatacaaaaacaatttaacattattttatcttttgcagt--aaaaatagcttgtgcaagctgatacataagcgcttatcatg 20170440  T
Q  161 ataagcgcttgtgtgataagccgcaaataagttgtttatccaaacaggccc 211  Q
    | ||||  |||||  |||| | ||||||||||||||| ||| |||||||||    
T  20170439 aaaagcagttgtgatataaactgcaaataagttgtttctcccaacaggccc 20170389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 117
Target Start/End: Complemental strand, 37689275 - 37689191
Alignment:
Q  30 cttattttcctaagttctctgatatatatcataaaaatagcttatagaatatacaaaaacaatttaactttatttcatctttttctat 117  Q
    ||||||||| ||||| ||||||||||  ||||||||| | | ||||| |||||||||||||||||  |||||||| ||||||| ||||    
T  37689275 cttattttcataagtgctctgatatac-tcataaaaacaacctatagcatatacaaaaacaattt--ctttattttatcttttgctat 37689191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 46886836 - 46886888
Alignment:
Q  156 tcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacagg 208  Q
    ||||||||||| ||| ||  |||||| ||||||||||||||||||||||||||    
T  46886836 tcatgataagcacttatgctataagctgcaaataagttgtttatccaaacagg 46886888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 63 - 110
Target Start/End: Complemental strand, 14145924 - 14145877
Alignment:
Q  63 aaaatagcttatagaatatacaaaaacaatttaactttatttcatctt 110  Q
    |||||| ||||||| |||||| |||||||||||||||||||| |||||    
T  14145924 aaaataacttatagcatatacgaaaacaatttaactttattttatctt 14145877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 146 - 217
Target Start/End: Complemental strand, 47132308 - 47132237
Alignment:
Q  146 taagcgcttttcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacaggcccatagta 217  Q
    |||| |||| |||||||||| |||||||  |||||  | |||||||||||||||||||||||| || |||||    
T  47132308 taagtgcttatcatgataagtgcttgtgctataaggtgaaaataagttgtttatccaaacagggccttagta 47132237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 104
Target Start/End: Complemental strand, 20257540 - 20257506
Alignment:
Q  70 cttatagaatatacaaaaacaatttaactttattt 104  Q
    ||||||| |||||||||||||||||||||||||||    
T  20257540 cttatagcatatacaaaaacaatttaactttattt 20257506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 200
Target Start/End: Complemental strand, 28240267 - 28240213
Alignment:
Q  146 taagcgcttttcatgataagcgcttgtgtgataagccgcaaataagttgtttatc 200  Q
    ||||| ||| ||||||||||||||||||  |||||| ||| ||||||||||||||    
T  28240267 taagcacttatcatgataagcgcttgtgctataagctgcagataagttgtttatc 28240213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 112
Target Start/End: Complemental strand, 849666 - 849625
Alignment:
Q  71 ttatagaatatacaaaaacaatttaactttatttcatctttt 112  Q
    |||||| |||| |||||||||||||||||||||| |||||||    
T  849666 ttatagcatattcaaaaacaatttaactttattttatctttt 849625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 211
Target Start/End: Complemental strand, 20257491 - 20257426
Alignment:
Q  146 taagcgcttttcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacaggccc 211  Q
    ||||||||| || ||||||   ||||||| |||||| |||||||| ||||| ||||||||||||||    
T  20257491 taagcgcttatcgtgataaagtcttgtgttataagctgcaaataaattgttaatccaaacaggccc 20257426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 849583 - 849551
Alignment:
Q  176 ataagccgcaaataagttgtttatccaaacagg 208  Q
    |||||| ||||||||||||||||||||||||||    
T  849583 ataagctgcaaataagttgtttatccaaacagg 849551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 203
Target Start/End: Original strand, 25447378 - 25447430
Alignment:
Q  151 gcttttcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaa 203  Q
    |||| ||||||||||||||||||| |||||| ||| ||||  |||||||||||    
T  25447378 gcttctcatgataagcgcttgtgttataagctgcacataaactgtttatccaa 25447430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 80 - 211
Target Start/End: Original strand, 3735566 - 3735695
Alignment:
Q  80 atacaaaaacaatttaactttatttcatctttttctatnnnnnnntagcttatgtaagcttatgcgtaagcgcttttcatgataagcgcttgtgtgataa 179  Q
    ||||||||| || |||||||||||||||||||| ||||       |||||||||||||||||| | ||||||||| ||||||||| | ||||||  ||||    
T  3735566 atacaaaaaaaaattaactttatttcatcttttgctatagaaa--tagcttatgtaagcttatccataagcgcttatcatgataatctcttgtgctataa 3735663  T
Q  180 gccgcaaataagttgtttatccaaacaggccc 211  Q
    || ||||||| |||||||||||||||||||||    
T  3735664 gctgcaaataggttgtttatccaaacaggccc 3735695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 125 - 205
Target Start/End: Original strand, 7319129 - 7319209
Alignment:
Q  125 tagcttatgtaagcttatgcgtaagcgcttttcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaac 205  Q
    |||||||||||||||||||| |||| |||| ||||||||||||||||||  |||||| | ||||||| ||||||| |||||    
T  7319129 tagcttatgtaagcttatgcataagtgcttatcatgataagcgcttgtgctataagctgtaaataagctgtttattcaaac 7319209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 63 - 211
Target Start/End: Complemental strand, 32372636 - 32372490
Alignment:
Q  63 aaaatagcttatagaatatacaaaaacaatttaactttatttcatctttttctatnnnnnnntagcttatgtaagcttatgcgtaagcgcttttcatgat 162  Q
    |||| ||||||||| |||||||||||||||| |||||||||| |||   | ||||       ||| |||||||||  ||| | |||| |||| |||||||    
T  32372636 aaaacagcttatagcatatacaaaaacaattcaactttattttatcaggtgctataataa--tagtttatgtaagtgtatacataagggcttatcatgat 32372539  T
Q  163 aagcgcttgtgtgataagccgcaaataagttgtttatccaaacaggccc 211  Q
    ||| |||||||  |||||| |||||||||||||||||||||||| ||||    
T  32372538 aagtgcttgtgctataagctgcaaataagttgtttatccaaacatgccc 32372490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 112
Target Start/End: Original strand, 16937907 - 16937990
Alignment:
Q  29 gcttattttcctaagttctctgatatatatcataaaaatagcttatagaatatacaaaaacaatttaactttatttcatctttt 112  Q
    ||||||||||||||||||||  |||||    ||||||| | ||||||| |||||||||||||||||||| |||||| |||||||    
T  16937907 gcttattttcctaagttctccaatatagcgtataaaaacaacttatagcatatacaaaaacaatttaacgttattttatctttt 16937990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 207
Target Start/End: Original strand, 12433521 - 12433570
Alignment:
Q  158 atgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacag 207  Q
    ||||||| ||||||||| |||||| |||||||||||||||||||||||||    
T  12433521 atgataaacgcttgtgttataagctgcaaataagttgtttatccaaacag 12433570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 206
Target Start/End: Complemental strand, 12554415 - 12554334
Alignment:
Q  125 tagcttatgtaagcttatgcgtaagcgcttttcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaaca 206  Q
    ||||||||| ||||||||||||||   ||| |||| ||||||| |||||   ||||| ||||||||||||||||||||||||    
T  12554415 tagcttatggaagcttatgcgtaaatacttatcataataagcgtttgtgctttaagctgcaaataagttgtttatccaaaca 12554334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 125 - 216
Target Start/End: Original strand, 25461873 - 25461964
Alignment:
Q  125 tagcttatgtaagcttatgcgtaagcgcttttcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacaggcccatagt 216  Q
    ||||||||| ||||||||   ||| | ||| ||||||||||||||||||| ||||||  |||||||  || |||||||||||||||| ||||    
T  25461873 tagcttatgcaagcttatatataaccacttatcatgataagcgcttgtgttataagctacaaataacctgcttatccaaacaggcccttagt 25461964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 125 - 206
Target Start/End: Original strand, 40439073 - 40439153
Alignment:
Q  125 tagcttatgtaagcttatgcgtaagcgcttttcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaaca 206  Q
    |||||||||||||||||| | | || || | ||| ||||||||||||||| |||||  ||||||||| ||||||||||||||    
T  40439073 tagcttatgtaagcttatacatgagtgcctatcaagataagcgcttgtgt-ataaggtgcaaataagctgtttatccaaaca 40439153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 210
Target Start/End: Original strand, 16938006 - 16938070
Alignment:
Q  146 taagcgcttttcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacaggcc 210  Q
    |||| |||| ||||||||| | ||||||| ||||||  |||||||||||||| ||||||||||||    
T  16938006 taagtgcttatcatgataaacacttgtgttataagcttcaaataagttgtttgtccaaacaggcc 16938070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 209
Target Start/End: Complemental strand, 32941422 - 32941339
Alignment:
Q  125 tagcttatgtaagcttatgcgtaagcgcttttcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacaggc 209  Q
    |||| |||| |||||||| ||||||||||| ||||| |||| |||| ||  |||||| || |||||| |||||||||||||||||    
T  32941422 tagcctatgcaagcttatacgtaagcgcttatcatggtaagtgctt-tgctataagctgctaataagctgtttatccaaacaggc 32941339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 207
Target Start/End: Complemental strand, 40426688 - 40426632
Alignment:
Q  151 gcttttcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacag 207  Q
    |||| |||||||||| |||||||  |||||| |||||| ||||||||||||||||||    
T  40426688 gcttatcatgataagtgcttgtgctataagctgcaaatgagttgtttatccaaacag 40426632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 156 - 211
Target Start/End: Original strand, 7706128 - 7706183
Alignment:
Q  156 tcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacaggccc 211  Q
    ||||||||||| ||||||  |||| | ||||||||||||||||| |||||||||||    
T  7706128 tcatgataagcacttgtgctataacctgcaaataagttgtttatacaaacaggccc 7706183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 156 - 207
Target Start/End: Original strand, 13697908 - 13697959
Alignment:
Q  156 tcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacag 207  Q
    |||||||||  |||| ||| |||||| |||||||||||||||||||||||||    
T  13697908 tcatgataaatgcttatgttataagctgcaaataagttgtttatccaaacag 13697959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 136 - 207
Target Start/End: Complemental strand, 28776926 - 28776855
Alignment:
Q  136 agcttatgcgtaagcgcttttcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacag 207  Q
    ||||||| | ||||| ||| |||||||||| ||||  |  |||||| |||||||||||||||||||||||||    
T  28776926 agcttatacataagcacttatcatgataagtgcttaggctataagctgcaaataagttgtttatccaaacag 28776855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 161 - 208
Target Start/End: Complemental strand, 42100245 - 42100198
Alignment:
Q  161 ataagcgcttgtgtgataagccgcaaataagttgtttatccaaacagg 208  Q
    |||||||||||||  |||||| ||||||||||| ||||||||||||||    
T  42100245 ataagcgcttgtgatataagctgcaaataagttatttatccaaacagg 42100198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 208
Target Start/End: Original strand, 9202877 - 9202939
Alignment:
Q  146 taagcgcttttcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacagg 208  Q
    ||||| ||| ||||||||| | ||||||  |||||| ||||||||| ||||||||||||||||    
T  9202877 taagcacttatcatgataaacacttgtgctataagctgcaaataagatgtttatccaaacagg 9202939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 117
Target Start/End: Complemental strand, 12425583 - 12425529
Alignment:
Q  63 aaaatagcttatagaatatacaaaaacaatttaactttatttcatctttttctat 117  Q
    |||| |||||||||  ||||| |||||||||||||||||||| ||||||| ||||    
T  12425583 aaaacagcttatagcttatacgaaaacaatttaactttattttatcttttactat 12425529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 206
Target Start/End: Original strand, 24030551 - 24030601
Alignment:
Q  156 tcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaaca 206  Q
    |||||||||| |||||||  |||||| ||||||||| ||||||||||||||    
T  24030551 tcatgataagtgcttgtgctataagctgcaaataagctgtttatccaaaca 24030601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 216
Target Start/End: Complemental strand, 29529859 - 29529801
Alignment:
Q  158 atgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacaggcccatagt 216  Q
    ||||||||||||||||  ||||||||| ||||||  |||||||||||||| ||| ||||    
T  29529859 atgataagcgcttgtgctataagccgcgaataagacgtttatccaaacagacccttagt 29529801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 208
Target Start/End: Original strand, 32703577 - 32703639
Alignment:
Q  146 taagcgcttttcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacagg 208  Q
    ||||||||| |||||||||  |||||||  |||||| ||||||||||||||| || |||||||    
T  32703577 taagcgcttatcatgataaatgcttgtgctataagctgcaaataagttgtttttctaaacagg 32703639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 112
Target Start/End: Complemental strand, 465950 - 465917
Alignment:
Q  79 tatacaaaaacaatttaactttatttcatctttt 112  Q
    |||||||||||||||||||||||||| |||||||    
T  465950 tatacaaaaacaatttaactttattttatctttt 465917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 113
Target Start/End: Original strand, 34102369 - 34102422
Alignment:
Q  60 ataaaaatagcttatagaatatacaaaaacaatttaactttatttcatcttttt 113  Q
    ||||||| | ||||||| |||||||||||||| ||||| |||||| ||||||||    
T  34102369 ataaaaacaacttatagcatatacaaaaacaaattaacattattttatcttttt 34102422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 112
Target Start/End: Complemental strand, 34736351 - 34736302
Alignment:
Q  63 aaaatagcttatagaatatacaaaaacaatttaactttatttcatctttt 112  Q
    |||| |||||||||  |||  |||||||||||||||||||||||||||||    
T  34736351 aaaacagcttatagcttatcaaaaaacaatttaactttatttcatctttt 34736302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 100
Target Start/End: Complemental strand, 12554534 - 12554494
Alignment:
Q  60 ataaaaatagcttatagaatatacaaaaacaatttaacttt 100  Q
    ||||||| | ||||||| |||||||||||||||||||||||    
T  12554534 ataaaaacaacttatagcatatacaaaaacaatttaacttt 12554494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 112
Target Start/End: Original strand, 30585496 - 30585536
Alignment:
Q  72 tatagaatatacaaaaacaatttaactttatttcatctttt 112  Q
    |||||| ||||| |||||||||||||||||||| |||||||    
T  30585496 tatagattataccaaaacaatttaactttattttatctttt 30585536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 39477882 - 39477826
Alignment:
Q  156 tcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacaggccca 212  Q
    |||||||||||||||||   |||||| ||||||||| || |||||| ||||||||||    
T  39477882 tcatgataagcgcttgtcctataagctgcaaataagctgcttatcccaacaggccca 39477826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 37)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 60 - 208
Target Start/End: Complemental strand, 41407317 - 41407170
Alignment:
Q  60 ataaaaatagcttatagaatatacaaaaa-caatttaactttatttcatctttttctatnnnnnnntagcttatgtaagcttatgcgtaagcgcttttca 158  Q
    ||||||||| ||||||| ||||||||||| |||||||||||||||| |||||||  ||        |||||||||||||||||| | |||| |||| |||    
T  41407317 ataaaaataacttatagcatatacaaaaaacaatttaactttattttatcttttggta--cagaaatagcttatgtaagcttatacataagtgcttatca 41407220  T
Q  159 tgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacagg 208  Q
    |||||||||||||||  |||||| ||||| ||| ||||||||||||||||    
T  41407219 tgataagcgcttgtgctataagctgcaaacaagctgtttatccaaacagg 41407170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 63 - 207
Target Start/End: Original strand, 12464531 - 12464673
Alignment:
Q  63 aaaatagcttatagaatatacaaaaacaatttaactttatttcatctttttctatnnnnnnntagcttatgtaagcttatgcgtaagcgcttttcatgat 162  Q
    |||||||||||||| ||||||||||||||||||||||||||| |||||||||||        |||||||||||||||| | | || || ||| |||||||    
T  12464531 aaaatagcttatagcatatacaaaaacaatttaactttattttatctttttcta--cagaaatagcttatgtaagcttctacatatgcacttatcatgat 12464628  T
Q  163 aagcgcttgtgtgataagccgcaaataagttgtttatccaaacag 207  Q
    ||| || || || ||||||  ||||||||  ||||||||||||||    
T  12464629 aagtgcgtgcgttataagctacaaataagccgtttatccaaacag 12464673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 77 - 173
Target Start/End: Original strand, 42868533 - 42868627
Alignment:
Q  77 aatatacaaaaacaatttaactttatttcatctttttctatnnnnnnntagcttatgtaagcttatgcgtaagcgcttttcatgataagcgcttgtg 173  Q
    |||||||||||||||||||||||||||| ||||||||||||       |||||||||||| ||||||| ||||||| | ||||||||||||||||||    
T  42868533 aatatacaaaaacaatttaactttattttatctttttctat--gaaaatagcttatgtaaacttatgcataagcgcctatcatgataagcgcttgtg 42868627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 70 - 211
Target Start/End: Original strand, 42659216 - 42659355
Alignment:
Q  70 cttatagaatatacaaaaacaatttaactttatttcatctttttctatnnnnnnntagcttatgtaagcttatgcgtaagcgcttttcatgataagcgct 169  Q
    ||||||| ||||||||||||||||| ||||||||| | | ||||| ||       |||||||||||||||||| | ||||||||| |||||||||| |      
T  42659216 cttatagcatatacaaaaacaatttcactttattttaccattttccataaaaa--tagcttatgtaagcttatacataagcgcttatcatgataagtgtg 42659313  T
Q  170 tgtgtgataagccgcaaataagttgtttatccaaacaggccc 211  Q
    ||||  || ||| |||||||||||  ||||||||||||||||    
T  42659314 tgtgctattagctgcaaataagtttcttatccaaacaggccc 42659355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 70 - 173
Target Start/End: Original strand, 41241197 - 41241298
Alignment:
Q  70 cttatagaatatacaaaaacaatttaactttatttcatctttttctatnnnnnnntagcttatgtaagcttatgcgtaagcgcttttcatgataagcgct 169  Q
    ||||||| |||||||||||||||||||||| |||| ||||||| ||||       |||||||||||||||||| | ||||||| | |||||||||| |||    
T  41241197 cttatagcatatacaaaaacaatttaacttcattttatcttttcctat--agaaatagcttatgtaagcttatccataagcgcatatcatgataagtgct 41241294  T
Q  170 tgtg 173  Q
    ||||    
T  41241295 tgtg 41241298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 125 - 208
Target Start/End: Complemental strand, 11863883 - 11863800
Alignment:
Q  125 tagcttatgtaagcttatgcgtaagcgcttttcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacagg 208  Q
    |||||||||||||||||||| ||||||||| |||||| ||| | |||||   ||||| | |||||||||||||||||| |||||    
T  11863883 tagcttatgtaagcttatgcataagcgcttatcatgacaagtgtttgtgctgtaagctgaaaataagttgtttatccagacagg 11863800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 210
Target Start/End: Original strand, 15757682 - 15757869
Alignment:
Q  29 gcttattttcctaagttctctgatatatatcataaaaatagcttatagaatatacaaaaa-caatttaactttatttcatctttttctatnnnnnnntag 127  Q
    |||||||||| || |||||||  ||||  | ||||| | | ||||||| ||||||||||| |||||||||||||||| ||| |||||| |       |||    
T  15757682 gcttattttcatacgttctcttgtatagcttataaatacaacttatagcatatacaaaaaacaatttaactttattttatcattttctttagata--tag 15757779  T
Q  128 cttatgtaagcttatgcgtaagc-------gcttttcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacaggcc 210  Q
    ||||||| ||||||| | |||||       |||| ||||||||||||||||||  |||||| | ||||||| ||||||||||||||||||    
T  15757780 cttatgtgagcttatacataagcttttatcgcttatcatgataagcgcttgtgctataagctgaaaataagctgtttatccaaacaggcc 15757869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 201
Target Start/End: Complemental strand, 32592631 - 32592463
Alignment:
Q  30 cttattttcctaagttctctgatatatatcataaaaatagcttatagaatatacaaaaacaatttaactttatttcatctttttctatnnnnnnntagct 129  Q
    ||||||||| |||||||||  ||||   | ||||||| | |||||||  ||||||||| ||||||||| |||||| ||||||||||||       ||| |    
T  32592631 cttattttcataagttctccaatattgcttataaaaacaacttatagcgtatacaaaa-caatttaacattattttatctttttctataaaaa--tagtt 32592535  T
Q  130 tatgtaagcttatgcgtaagcgcttttcatgataagcgcttgtgtgataagccgcaaataagttgtttatcc 201  Q
    |||| |||||||| | ||||||||| | |||||||| | |||||  ||||||  ||||||||||||||||||    
T  32592534 tatgcaagcttatacataagcgcttataatgataagtgtttgtgctataagctacaaataagttgtttatcc 32592463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 70 - 204
Target Start/End: Complemental strand, 41851540 - 41851408
Alignment:
Q  70 cttatagaatatacaaaaacaatttaactttatttcatctttttctatnnnnnnntagcttatgtaagcttatgcgtaagcgcttttcatgataagcgct 169  Q
    ||||||| ||||||||||||||||||||||||||  ||||||| ||||       || ||  |||||||||||   |||||| ||  |||||||||||||    
T  41851540 cttatagcatatacaaaaacaatttaactttattgtatcttttcctat--ataaatatctcgtgtaagcttatatataagcgtttagcatgataagcgct 41851443  T
Q  170 tgtgtgataagccgcaaataagttgtttatccaaa 204  Q
    ||||  ||| || ||||||||| ||||||||||||    
T  41851442 tgtgctatatgctgcaaataagatgtttatccaaa 41851408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 157 - 208
Target Start/End: Complemental strand, 4606911 - 4606860
Alignment:
Q  157 catgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacagg 208  Q
    |||||||||| ||||||| |||||| || |||||||||||||||||||||||    
T  4606911 catgataagcacttgtgttataagctgcgaataagttgtttatccaaacagg 4606860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 206
Target Start/End: Complemental strand, 38010361 - 38010283
Alignment:
Q  128 cttatgtaagcttatgcgtaagcgcttttcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaaca 206  Q
    |||| |||||||||  |||||| || | ||||||||||| ||||||  |||||| |||||||||||||||||| |||||    
T  38010361 cttacgtaagcttagacgtaagggcatatcatgataagcacttgtgatataagctgcaaataagttgtttatctaaaca 38010283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 208
Target Start/End: Original strand, 39659647 - 39659709
Alignment:
Q  146 taagcgcttttcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacagg 208  Q
    ||||||||| |||||||||||  |||||   ||||| ||||||||||||||||||||||||||    
T  39659647 taagcgcttatcatgataagcatttgtgctctaagctgcaaataagttgtttatccaaacagg 39659709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 62 - 205
Target Start/End: Complemental strand, 12795805 - 12795664
Alignment:
Q  62 aaaaatagcttatagaatatacaaaaacaatttaactttatttcatctttttctatnnnnnnntagcttatgtaagcttatgcgtaagcgcttttcatga 161  Q
    ||||| ||||||||| |||||||| ||||||| || |||| || ||| ||||||||       |||||||||||||||||||   ||| |||| ||||||    
T  12795805 aaaaacagcttatagcatatacaagaacaattaaaatttacttaatccttttctatcaaaa--tagcttatgtaagcttatgaaaaagtgcttatcatga 12795708  T
Q  162 taagcgcttgtgtgataagccgcaaataagttgtttatccaaac 205  Q
    ||||| ||| ||  |||| | ||||||||  |||||||||||||    
T  12795707 taagcacttatgctataaactgcaaataaactgtttatccaaac 12795664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 78 - 173
Target Start/End: Original strand, 31561826 - 31561919
Alignment:
Q  78 atatacaaaaacaatttaactttatttcatctttttctatnnnnnnntagcttatgtaagcttatgcgtaagcgcttttcatgataagcgcttgtg 173  Q
    ||||| ||||||||||||||||||||| ||| |||  |||       ||||||||||||||||||  |||||||||| ||||||||| ||||||||    
T  31561826 atataaaaaaacaatttaactttattttatcatttattatagata--tagcttatgtaagcttatatgtaagcgcttatcatgataaacgcttgtg 31561919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 26143779 - 26143831
Alignment:
Q  156 tcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacagg 208  Q
    ||||| |||| |||||||| |||| | ||||||||||||||||||||||||||    
T  26143779 tcatggtaagtgcttgtgttataaactgcaaataagttgtttatccaaacagg 26143831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 39073744 - 39073796
Alignment:
Q  60 ataaaaatagcttatagaatatacaaaaacaatttaactttatttcatctttt 112  Q
    ||||||||  ||||||| |||||||||||||||||||| |||||| |||||||    
T  39073744 ataaaaattacttatagcatatacaaaaacaatttaacgttattttatctttt 39073796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 208
Target Start/End: Original strand, 41880642 - 41880694
Alignment:
Q  157 catgataagcgcttgtgtgataagccgcaaa-taagttgtttatccaaacagg 208  Q
    |||||||||||||||||  |||||| ||||| |||||||||||||||||||||    
T  41880642 catgataagcgcttgtgctataagctgcaaagtaagttgtttatccaaacagg 41880694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 156 - 211
Target Start/End: Original strand, 1633695 - 1633750
Alignment:
Q  156 tcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacaggccc 211  Q
    ||||||||||| ||| ||  |||||| ||||||||| |||||||||||||||||||    
T  1633695 tcatgataagcacttctgctataagctgcaaataagctgtttatccaaacaggccc 1633750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 117
Target Start/End: Complemental strand, 9395142 - 9395088
Alignment:
Q  63 aaaatagcttatagaatatacaaaaacaatttaactttatttcatctttttctat 117  Q
    |||| |||||||||| ||||  ||||||||||| |||||||| ||||||||||||    
T  9395142 aaaacagcttatagattatatgaaaacaatttagctttattttatctttttctat 9395088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 217
Target Start/End: Original strand, 27695731 - 27695797
Alignment:
Q  151 gcttttcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacaggcccatagta 217  Q
    |||| |||||||||| | |||||  ||||||  ||||||||||||||||||||| ||| ||||||||    
T  27695731 gcttatcatgataagtgtttgtgctataagctacaaataagttgtttatccaaataggtccatagta 27695797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 210
Target Start/End: Complemental strand, 43036541 - 43036507
Alignment:
Q  176 ataagccgcaaataagttgtttatccaaacaggcc 210  Q
    |||||| ||||||||||||||||||||||||||||    
T  43036541 ataagcggcaaataagttgtttatccaaacaggcc 43036507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 2416353 - 2416276
Alignment:
Q  35 tttcctaagttctctgatatatatcataaaaatagcttatagaatatacaaaaacaatttaactttatttcatctttt 112  Q
    |||| |||||||||| |||||  | ||||||| |||||||||  ||||  ||||||||||||||| |||| |||||||    
T  2416353 tttcataagttctcttatataacttataaaaacagcttatagcttatatcaaaacaatttaacttcattttatctttt 2416276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 199
Target Start/End: Complemental strand, 3311995 - 3311922
Alignment:
Q  126 agcttatgtaagcttatgcgtaagcgcttttcatgataagcgcttgtgtgataagccgcaaataagttgtttat 199  Q
    |||||||||| |||||| | ||||| ||||||||||||| | ||||||  |||||| | |||||| ||||||||    
T  3311995 agcttatgtatgcttatacataagcacttttcatgataatcacttgtgctataagctgaaaataatttgtttat 3311922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 112
Target Start/End: Original strand, 36114597 - 36114630
Alignment:
Q  79 tatacaaaaacaatttaactttatttcatctttt 112  Q
    |||||||||||||||||||||||||| |||||||    
T  36114597 tatacaaaaacaatttaactttattttatctttt 36114630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 111
Target Start/End: Original strand, 38916379 - 38916412
Alignment:
Q  78 atatacaaaaacaatttaactttatttcatcttt 111  Q
    ||||||||||||||||||||||||||| ||||||    
T  38916379 atatacaaaaacaatttaactttattttatcttt 38916412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 208
Target Start/End: Complemental strand, 42457884 - 42457827
Alignment:
Q  151 gcttttcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacagg 208  Q
    |||| |||||||| |||||||||  ||||||| ||||||||| ||| |||||||||||    
T  42457884 gcttatcatgataggcgcttgtgctataagccacaaataagtggttaatccaaacagg 42457827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 7043881 - 7043913
Alignment:
Q  176 ataagccgcaaataagttgtttatccaaacagg 208  Q
    |||||| ||||||||||||||||||||||||||    
T  7043881 ataagctgcaaataagttgtttatccaaacagg 7043913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 211
Target Start/End: Complemental strand, 21827992 - 21827948
Alignment:
Q  167 gcttgtgtgataagccgcaaataagttgtttatccaaacaggccc 211  Q
    |||||||| |||||| |||||||||||||||||  ||||||||||    
T  21827992 gcttgtgttataagctgcaaataagttgtttatataaacaggccc 21827948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 26626807 - 26626759
Alignment:
Q  156 tcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaa 204  Q
    |||||||||| |||| ||  |||||| ||||||||||||||||||||||    
T  26626807 tcatgataagagcttatgctataagctgcaaataagttgtttatccaaa 26626759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 206
Target Start/End: Complemental strand, 27316987 - 27316943
Alignment:
Q  162 taagcgcttgtgtgataagccgcaaataagttgtttatccaaaca 206  Q
    |||||| |||||| |||||| ||||||||||||| ||||||||||    
T  27316987 taagcgtttgtgttataagctgcaaataagttgtctatccaaaca 27316943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 211
Target Start/End: Original strand, 33319996 - 33320024
Alignment:
Q  183 gcaaataagttgtttatccaaacaggccc 211  Q
    |||||||||||||||||||||||||||||    
T  33319996 gcaaataagttgtttatccaaacaggccc 33320024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 112
Target Start/End: Complemental strand, 36114414 - 36114382
Alignment:
Q  80 atacaaaaacaatttaactttatttcatctttt 112  Q
    ||||||||||||||||||||||||| |||||||    
T  36114414 atacaaaaacaatttaactttattttatctttt 36114382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 211
Target Start/End: Complemental strand, 36285308 - 36285248
Alignment:
Q  151 gcttttcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacaggccc 211  Q
    |||| |||| ||||| |||||||| |||||| |||||||| ||||| | ||||||||||||    
T  36285308 gcttatcattataagtgcttgtgttataagctgcaaataaattgttgaaccaaacaggccc 36285248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 207
Target Start/End: Complemental strand, 36534728 - 36534668
Alignment:
Q  147 aagcgcttttcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacag 207  Q
    |||| ||| ||||||||||| ||| ||| |||| | | |||||||||||||||||||||||    
T  36534728 aagcacttatcatgataagcacttatgttataaactgaaaataagttgtttatccaaacag 36534668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 208
Target Start/End: Original strand, 40682492 - 40682564
Alignment:
Q  136 agcttatgcgtaagcgcttttcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacagg 208  Q
    ||||||| | |||||||||  ||||||||||||||| |  || ||  ||||||||| ||||||||||||||||    
T  40682492 agcttatacataagcgcttaccatgataagcgcttgcgctatgagttgcaaataagatgtttatccaaacagg 40682564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 41407080 - 41407040
Alignment:
Q  70 cttatagaatatacaaaaacaatttaactttatttcatctt 110  Q
    |||||||||||||||||| || ||||||||||||| |||||    
T  41407080 cttatagaatatacaaaagcagtttaactttattttatctt 41407040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 211
Target Start/End: Original strand, 41812250 - 41812278
Alignment:
Q  183 gcaaataagttgtttatccaaacaggccc 211  Q
    |||||||||||||||||||||||||||||    
T  41812250 gcaaataagttgtttatccaaacaggccc 41812278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 63 - 211
Target Start/End: Original strand, 1058132 - 1058278
Alignment:
Q  63 aaaatagcttatagaatatacaaaaacaatttaactttatttcatctttttctatnnnnnnntagcttatgtaagcttatgcgtaagcgcttttcatgat 162  Q
    |||||||||||||| |||||||||||||  |||||||||||| ||  ||| ||||       |||||||||||||||||| | ||||||||| ||||  |    
T  1058132 aaaatagcttatagcatatacaaaaacagattaactttattttatgatttgctataaaaa--tagcttatgtaagcttatacataagcgcttatcatagt 1058229  T
Q  163 aagcgcttgtgtgataagccgcaaataagttgtttatccaaacaggccc 211  Q
    |||||||||||  |||||| ||||||||| ||||||| |||||||||||    
T  1058230 aagcgcttgtgctataagctgcaaataagctgtttattcaaacaggccc 1058278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 125 - 217
Target Start/End: Original strand, 14956413 - 14956505
Alignment:
Q  125 tagcttatgtaagcttatgcgtaagcgcttttcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacaggcccatagta 217  Q
    ||||||||| |||||||| | |||| |||| |||||||||||| |||||  |||||| |||||||||||||||||||||||| |||| |||||    
T  14956413 tagcttatgcaagcttatacataagtgcttatcatgataagcgattgtgctataagctgcaaataagttgtttatccaaacaagcccttagta 14956505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 30 - 104
Target Start/End: Complemental strand, 26771310 - 26771236
Alignment:
Q  30 cttattttcctaagttctctgatatatatcataaaaatagcttatagaatatacaaaaacaatttaactttattt 104  Q
    ||||||||| |||||||||| |||||| | ||||||| ||||||||| ||||||||||||||||||| |||||||    
T  26771310 cttattttcataagttctctaatatatcttataaaaaaagcttatagcatatacaaaaacaatttaagtttattt 26771236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 137 - 216
Target Start/End: Complemental strand, 34236112 - 34236033
Alignment:
Q  137 gcttatgcgtaagcgcttttcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacaggcccatagt 216  Q
    |||||| | |||| |||| ||||||||| || |||||| |||||| |||||||||||||||||||||||||| |||||||    
T  34236112 gcttatccataagggcttatcatgataaccgtttgtgttataagctgcaaataagttgtttatccaaacaggaccatagt 34236033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 125 - 207
Target Start/End: Original strand, 36963463 - 36963545
Alignment:
Q  125 tagcttatgtaagcttatgcgtaagcgcttttcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacag 207  Q
    ||||||| | |||||||| |||||||| || ||||||||||||||||||  |||||| |||||||| ||||||| ||||||||    
T  36963463 tagcttaagaaagcttatccgtaagcgtttatcatgataagcgcttgtgctataagctgcaaataaattgtttacccaaacag 36963545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 80 - 211
Target Start/End: Original strand, 35534686 - 35534813
Alignment:
Q  80 atacaaaaacaatttaactttatttcatctttttctatnnnnnnntagcttatgtaagcttatgcgtaagcgcttttcatgataagcgcttgtgtgataa 179  Q
    ||||||||||||||||||||||||| ||||||| ||||       || ||||||||||||||||| || |||||| | ||||||| ||| ||||  ||||    
T  35534686 atacaaaaacaatttaactttattttatctttt-ctataaaaa--tatcttatgtaagcttatgcata-gcgcttataatgataaacgcctgtgctataa 35534781  T
Q  180 gccgcaaataagttgtttatccaaacaggccc 211  Q
    || ||||||||| ||||| |||||||||||||    
T  35534782 gctgcaaataagctgtttttccaaacaggccc 35534813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 63 - 117
Target Start/End: Complemental strand, 29205820 - 29205766
Alignment:
Q  63 aaaatagcttatagaatatacaaaaacaatttaactttatttcatctttttctat 117  Q
    |||||| ||||||| |||||||||||||||||||||| |||| ||||||||||||    
T  29205820 aaaataacttatagcatatacaaaaacaatttaacttcattttatctttttctat 29205766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 68 - 117
Target Start/End: Original strand, 12497294 - 12497343
Alignment:
Q  68 agcttatagaatatacaaaaacaatttaactttatttcatctttttctat 117  Q
    ||||||||| |||||||||||||| |||||||||||| ||||||| ||||    
T  12497294 agcttatagcatatacaaaaacaagttaactttattttatcttttgctat 12497343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 151 - 208
Target Start/End: Complemental strand, 40981056 - 40980999
Alignment:
Q  151 gcttttcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacagg 208  Q
    |||| ||| ||||||||||||||  |||||| ||||||||| ||||||||||||||||    
T  40981056 gcttatcaagataagcgcttgtgctataagctgcaaataagctgtttatccaaacagg 40980999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 208
Target Start/End: Complemental strand, 26215447 - 26215375
Alignment:
Q  136 agcttatgcgtaagcgcttttcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacagg 208  Q
    ||||||| | ||||||||| |||| ||||||||| |||  |||||| | ||||||||||||||| ||||||||    
T  26215447 agcttatacataagcgcttatcattataagcgctcgtgctataagctgaaaataagttgtttatacaaacagg 26215375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 29 - 104
Target Start/End: Complemental strand, 18133702 - 18133627
Alignment:
Q  29 gcttattttcctaagttctctgatatatatcataaaaatagcttatagaatatacaaaaacaatttaactttattt 104  Q
    |||||||||| |||||||||  |||||  | ||||||  ||||||||| |||||||||| ||||||||||| ||||    
T  18133702 gcttattttcataagttctccaatatagtttataaaaccagcttataggatatacaaaagcaatttaacttcattt 18133627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 156 - 207
Target Start/End: Original strand, 29819029 - 29819080
Alignment:
Q  156 tcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacag 207  Q
    ||||||||||| ||| ||  |||||| |||||||||||||||||||||||||    
T  29819029 tcatgataagcccttttgctataagctgcaaataagttgtttatccaaacag 29819080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 104
Target Start/End: Original strand, 10758321 - 10758355
Alignment:
Q  70 cttatagaatatacaaaaacaatttaactttattt 104  Q
    ||||||| |||||||||||||||||||||||||||    
T  10758321 cttatagcatatacaaaaacaatttaactttattt 10758355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 211
Target Start/End: Complemental strand, 18133586 - 18133552
Alignment:
Q  177 taagccgcaaataagttgtttatccaaacaggccc 211  Q
    ||||| |||||||||||||||||||||||||||||    
T  18133586 taagctgcaaataagttgtttatccaaacaggccc 18133552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 104
Target Start/End: Complemental strand, 7646210 - 7646177
Alignment:
Q  71 ttatagaatatacaaaaacaatttaactttattt 104  Q
    ||||||| ||||||||||||||||||||||||||    
T  7646210 ttatagattatacaaaaacaatttaactttattt 7646177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 37353307 - 37353348
Alignment:
Q  63 aaaatagcttatagaatatacaaaaacaatttaactttattt 104  Q
    |||| ||||||||| ||| |||||||||||||||||||||||    
T  37353307 aaaacagcttatagcatacacaaaaacaatttaactttattt 37353348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 216
Target Start/End: Complemental strand, 22790541 - 22790501
Alignment:
Q  176 ataagccgcaaataagttgtttatccaaacaggcccatagt 216  Q
    |||||| | |||||||||||||||||||||||| |||||||    
T  22790541 ataagctgtaaataagttgtttatccaaacaggtccatagt 22790501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 38602348 - 38602296
Alignment:
Q  60 ataaaaatagcttatagaatatacaaaaacaatttaactttatttcatctttt 112  Q
    ||||||| ||||||||| |||| ||||| ||||||||||| |||| |||||||    
T  38602348 ataaaaacagcttatagcatatgcaaaagcaatttaacttcattttatctttt 38602296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 37)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 125 - 211
Target Start/End: Complemental strand, 37473351 - 37473265
Alignment:
Q  125 tagcttatgtaagcttatgcgtaagcgcttttcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacaggccc 211  Q
    |||||||||||||||||| | |||| |||| ||||||||||  ||||||  |||||| |||||||||||||||||||||||||||||    
T  37473351 tagcttatgtaagcttatacataagtgcttgtcatgataagaacttgtgcaataagctgcaaataagttgtttatccaaacaggccc 37473265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 136 - 216
Target Start/End: Complemental strand, 22344029 - 22343949
Alignment:
Q  136 agcttatgcgtaagcgcttttcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacaggcccatagt 216  Q
    ||||||||| ||||| ||| |||||||||||||||||| | ||||  |||||||||||| |||||||||||||||||||||    
T  22344029 agcttatgcataagctcttatcatgataagcgcttgtgcggtaagttgcaaataagttgattatccaaacaggcccatagt 22343949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 60 - 210
Target Start/End: Complemental strand, 41505701 - 41505554
Alignment:
Q  60 ataaaaatagcttatagaatatacaaaaacaatttaactttatttcatctttttctatnnnnnnntagcttatgtaagcttatgcgtaagcgcttttcat 159  Q
    ||||||| ||||||||  |||||| ||||||||||||||||| || | | ||||||||       ||||||||||||||  |||| ||||| ||| ||||    
T  41505701 ataaaaacagcttataacatatacgaaaacaatttaactttaattta-cgttttctataaaaa--tagcttatgtaagccaatgcataagcacttatcat 41505605  T
Q  160 gataagcgcttgtgtgataagccgcaaataagttgtttatccaaacaggcc 210  Q
     ||||||| |||||  |||||| ||||||||| ||||||||||||||||||    
T  41505604 cataagcgtttgtgctataagctgcaaataagctgtttatccaaacaggcc 41505554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 125 - 212
Target Start/End: Complemental strand, 5720933 - 5720846
Alignment:
Q  125 tagcttatgtaagcttatgcgtaagcgcttttcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacaggccca 212  Q
    ||||||| |||| ||||| | ||||||||| |||||||| | |||||||| ||||||| |||||||| | ||||||||||||||||||    
T  5720933 tagcttacgtaaacttatacataagcgcttatcatgataggtgcttgtgttataagccacaaataagatatttatccaaacaggccca 5720846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 125 - 212
Target Start/End: Complemental strand, 5741614 - 5741527
Alignment:
Q  125 tagcttatgtaagcttatgcgtaagcgcttttcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacaggccca 212  Q
    |||||||||||| ||||| | ||||||||| |||||||| | |||||||  ||||||| |||||||| | ||||||||||||||||||    
T  5741614 tagcttatgtaaacttatacataagcgcttatcatgataggtgcttgtgctataagccacaaataagatatttatccaaacaggccca 5741527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 80 - 208
Target Start/End: Complemental strand, 14331784 - 14331658
Alignment:
Q  80 atacaaaaacaatttaactttatttcatctttttctatnnnnnnntagcttatgtaagcttatgcgtaagcgcttttcatgataagcgcttgtgtgataa 179  Q
    ||||||||||||||||||||||||| ||||| |||| |       |||||||||| ||||||| | |||| |||| |||||| |||||||||||  ||||    
T  14331784 atacaaaaacaatttaactttattttatcttgttctgtagaaa--tagcttatgttagcttatacataagtgcttatcatgagaagcgcttgtgctataa 14331687  T
Q  180 gccgcaaataagttgtttatccaaacagg 208  Q
    ||  |||||||| |||||||| |||||||    
T  14331686 gcttcaaataagctgtttatctaaacagg 14331658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 129 - 211
Target Start/End: Original strand, 41195316 - 41195398
Alignment:
Q  129 ttatgtaagcttatgcgtaagcgcttttcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacaggccc 211  Q
    |||||||| ||||| | |||||| || ||| ||||||||||||||  |||||| ||||||||||| |||||||||||||||||    
T  41195316 ttatgtaaacttatacataagcgattatcaggataagcgcttgtgctataagctgcaaataagttatttatccaaacaggccc 41195398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 41 - 211
Target Start/End: Original strand, 14576689 - 14576857
Alignment:
Q  41 aagttctctgatatatatcataaaaatagcttatagaatatacaaaaacaatttaactttatttcatctttttctatnnnnnnntagcttatgtaagctt 140  Q
    ||||||||| |||||  | ||||||| |  |||||| ||||||||||||||||||||||||||| ||| ||| ||||       |||||||  | |||||    
T  14576689 aagttctctaatatagcttataaaaaaaaattatagcatatacaaaaacaatttaactttattttatcctttactat--ggaaatagcttacatgagctt 14576786  T
Q  141 atgcgtaagcgcttttcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacaggccc 211  Q
    ||   |||| |||| |||||||||| |||||||  |||||| | ||||||| ||||||||| |||||||||    
T  14576787 ataaataagtgcttatcatgataagagcttgtgctataagctggaaataagatgtttatcccaacaggccc 14576857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 147 - 207
Target Start/End: Original strand, 47498973 - 47499033
Alignment:
Q  147 aagcgcttttcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacag 207  Q
    |||||||| ||||||||||| ||||||  |||||| |||||||||||||||||||||||||    
T  47498973 aagcgcttatcatgataagcacttgtgctataagctgcaaataagttgtttatccaaacag 47499033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 70 - 206
Target Start/End: Complemental strand, 51688710 - 51688576
Alignment:
Q  70 cttatagaatatacaaaaacaatttaactttatttcatctttttctatnnnnnnntagcttatgtaagcttatgcgtaagcgcttttcatgataagcgct 169  Q
    ||||||| || ||||||||||||||| |||||||| ||||||| |||        ||||| ||||||||||||   ||| | ||| ||||||||||| ||    
T  51688710 cttatagcatgtacaaaaacaatttatctttattttatcttttccta--cataaatagctcatgtaagcttatatataaacacttatcatgataagcact 51688613  T
Q  170 tgtgtgataagccgcaaataagttgtttatccaaaca 206  Q
    |||   |||||| ||||||||||||||||||||||||    
T  51688612 tgtactataagctgcaaataagttgtttatccaaaca 51688576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 146 - 207
Target Start/End: Complemental strand, 473097 - 473036
Alignment:
Q  146 taagcgcttttcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacag 207  Q
    |||||||||  |||||||||||||| |||  ||||| |||||||||||||||||||||||||    
T  473097 taagcgcttaccatgataagcgcttttgttgtaagctgcaaataagttgtttatccaaacag 473036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 60 - 113
Target Start/End: Original strand, 4613951 - 4614004
Alignment:
Q  60 ataaaaatagcttatagaatatacaaaaacaatttaactttatttcatcttttt 113  Q
    ||||||||| |||||||||||| ||| |||||||||||||||||| ||||||||    
T  4613951 ataaaaataacttatagaatatccaacaacaatttaactttattttatcttttt 4614004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 208
Target Start/End: Original strand, 27820470 - 27820531
Alignment:
Q  147 aagcgcttttcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacagg 208  Q
    |||| ||| ||||||||||||||| ||  |||||| ||||||||||||||||||||||||||    
T  27820470 aagcccttatcatgataagcgcttatgctataagctgcaaataagttgtttatccaaacagg 27820531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 30582003 - 30582060
Alignment:
Q  60 ataaaaatagcttatagaatatacaaaaacaatttaactttatttcatctttttctat 117  Q
    ||||||| ||||| ||| |||||||||||||| |||||||||||| ||||||||||||    
T  30582003 ataaaaacagcttgtagcatatacaaaaacaagttaactttattttatctttttctat 30582060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 136 - 208
Target Start/End: Original strand, 5894282 - 5894354
Alignment:
Q  136 agcttatgcgtaagcgcttttcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacagg 208  Q
    ||||||| | ||||||||| ||||||||||| ||||||  ||||||  |||||||| ||||||||||||||||    
T  5894282 agcttatacataagcgcttatcatgataagcacttgtgctataagcttcaaataagctgtttatccaaacagg 5894354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 135 - 211
Target Start/End: Original strand, 33541836 - 33541912
Alignment:
Q  135 aagcttatgcgtaagcgcttttcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacaggccc 211  Q
    |||||||| | ||||||||| ||||||||| | ||||||  |||| | ||||||||||||||||||||||| |||||    
T  33541836 aagcttatacataagcgcttatcatgataaacacttgtgctataaactgcaaataagttgtttatccaaactggccc 33541912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 29 - 112
Target Start/End: Complemental strand, 13810044 - 13809961
Alignment:
Q  29 gcttattttcctaagttctctgatatatatcataaaaatagcttatagaatatacaaaaacaatttaactttatttcatctttt 112  Q
    ||||||||||  ||||||||| |||||  | ||||||| |   ||||| ||||||||||||||||||||||||||| |||||||    
T  13810044 gcttattttcacaagttctctaatatagtttataaaaacaatatatagcatatacaaaaacaatttaactttattttatctttt 13809961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 70 - 117
Target Start/End: Complemental strand, 15477583 - 15477536
Alignment:
Q  70 cttatagaatatacaaaaacaatttaactttatttcatctttttctat 117  Q
    ||||||| ||||||||||||||||||||||||||| ||||||| ||||    
T  15477583 cttatagcatatacaaaaacaatttaactttattttatcttttactat 15477536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 125 - 216
Target Start/End: Original strand, 17727213 - 17727304
Alignment:
Q  125 tagcttatgtaagcttatgcgtaagcgcttttcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacaggcccatagt 216  Q
    ||||||||| || |||||   ||||||||| || ||||||| |||||||  ||||||  || ||||||||||||||||||||||||| ||||    
T  17727213 tagcttatgcaaccttatatctaagcgcttatcttgataagtgcttgtgctataagctacacataagttgtttatccaaacaggcccttagt 17727304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 63 - 110
Target Start/End: Original strand, 24915109 - 24915156
Alignment:
Q  63 aaaatagcttatagaatatacaaaaacaatttaactttatttcatctt 110  Q
    |||| ||||||||| ||||||||||||||||||||||||||| |||||    
T  24915109 aaaacagcttatagcatatacaaaaacaatttaactttattttatctt 24915156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 70 - 117
Target Start/End: Complemental strand, 30581807 - 30581760
Alignment:
Q  70 cttatagaatatacaaaaacaatttaactttatttcatctttttctat 117  Q
    ||||||| ||||| ||||||||||||||||||||||||| ||||||||    
T  30581807 cttatagcatataaaaaaacaatttaactttatttcatcgttttctat 30581760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 70 - 117
Target Start/End: Complemental strand, 47432101 - 47432054
Alignment:
Q  70 cttatagaatatacaaaaacaatttaactttatttcatctttttctat 117  Q
    ||||||| |||| |||||||||||||||||||||| ||||||||||||    
T  47432101 cttatagcatattcaaaaacaatttaactttattttatctttttctat 47432054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 63 - 104
Target Start/End: Complemental strand, 34405169 - 34405128
Alignment:
Q  63 aaaatagcttatagaatatacaaaaacaatttaactttattt 104  Q
    ||||| ||||||||| ||||||||||||||||||||||||||    
T  34405169 aaaattgcttatagattatacaaaaacaatttaactttattt 34405128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 126 - 211
Target Start/End: Complemental strand, 38247404 - 38247320
Alignment:
Q  126 agcttatgtaagcttatgcgtaagcgcttttcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacaggccc 211  Q
    ||||||||| ||||||| | |||| || | |||||||||| |||||||  |||||| ||||||| | |||||||||||||||||||    
T  38247404 agcttatgtgagcttatacataagtgcatatcatgataagtgcttgtgctataagctgcaaata-gctgtttatccaaacaggccc 38247320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 46423196 - 46423151
Alignment:
Q  161 ataagcgcttgtgtgataagccgcaaataagttgtttatccaaaca 206  Q
    ||||| |||||||| |||||| ||||||||||||||||||||||||    
T  46423196 ataagtgcttgtgttataagctgcaaataagttgtttatccaaaca 46423151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 125 - 208
Target Start/End: Complemental strand, 2295056 - 2294982
Alignment:
Q  125 tagcttatgtaagcttatgcgtaagcgcttttcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacagg 208  Q
    |||||||||||||||||||| ||||| ||| |||||||||||         |||||| |||||||||||| |||||||||||||    
T  2295056 tagcttatgtaagcttatgcataagcacttatcatgataagc---------ataagctgcaaataagttgcttatccaaacagg 2294982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 30 - 97
Target Start/End: Original strand, 3234040 - 3234107
Alignment:
Q  30 cttattttcctaagttctctgatatatatcataaaaatagcttatagaatatacaaaaacaatttaac 97  Q
    ||||||||| |||||||||  |||||  | ||||||| | ||||||| ||||||||||||||||||||    
T  3234040 cttattttcataagttctccaatatagcttataaaaacaacttatagcatatacaaaaacaatttaac 3234107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 211
Target Start/End: Original strand, 3234141 - 3234227
Alignment:
Q  125 tagcttatgtaagcttatgcgtaagcgcttttcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacaggccc 211  Q
    ||||||||| | ||||||   ||||||||| ||||||||||||||||||  |||||  ||||| |||||  ||||||||||| ||||    
T  3234141 tagcttatgcacgcttatatataagcgcttatcatgataagcgcttgtgctataagttgcaaacaagttagttatccaaacaagccc 3234227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 112
Target Start/End: Complemental strand, 8081884 - 8081850
Alignment:
Q  78 atatacaaaaacaatttaactttatttcatctttt 112  Q
    ||||||||||||||||||||||||||| |||||||    
T  8081884 atatacaaaaacaatttaactttattttatctttt 8081850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 104
Target Start/End: Original strand, 17603409 - 17603483
Alignment:
Q  30 cttattttcctaagttctctgatatatatcataaaaatagcttatagaatatacaaaaacaatttaactttattt 104  Q
    |||||||||  ||||||||  |||||  | ||||||| | ||||||| |||||||||||||||||||| ||||||    
T  17603409 cttattttcagaagttctccaatatagcttataaaaacaacttatagcatatacaaaaacaatttaacgttattt 17603483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 104
Target Start/End: Original strand, 37517231 - 37517293
Alignment:
Q  42 agttctctgatatatatcataaaaatagcttatagaatatacaaaaacaatttaactttattt 104  Q
    |||||||| |||||  | || |||||| ||||||  |||||||||||||||||||||||||||    
T  37517231 agttctctaatatagcttattaaaataacttataatatatacaaaaacaatttaactttattt 37517293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 112
Target Start/End: Complemental strand, 51190870 - 51190824
Alignment:
Q  66 atagcttatagaatatacaaaaacaatttaactttatttcatctttt 112  Q
    ||||||||||   |||||||||||||||||||||||||| |||||||    
T  51190870 atagcttataacttatacaaaaacaatttaactttattttatctttt 51190824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 117
Target Start/End: Complemental strand, 7862125 - 7862036
Alignment:
Q  28 ggcttattttcctaagttctctgatatatatcataaaaatagcttatagaatatacaaaaacaatttaactttatttcatctttttctat 117  Q
    ||||||||||| || |||||  ||||||  | ||| ||| ||||||||| ||| |||||||||||||| | | |||| ||||||||||||    
T  7862125 ggcttattttcttatgttctgcgatatagcttatagaaacagcttatagcatagacaaaaacaatttaccatcattttatctttttctat 7862036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 207
Target Start/End: Original strand, 24562450 - 24562503
Alignment:
Q  154 tttcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacag 207  Q
    ||||||||||||| | ||||  |||||| ||||||||| |||||||||||||||    
T  24562450 tttcatgataagcacatgtgctataagctgcaaataagctgtttatccaaacag 24562503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 102
Target Start/End: Complemental strand, 2294956 - 2294884
Alignment:
Q  30 cttattttcctaagttctctgatatatatcataaaaatagcttatagaatatacaaaaacaatttaactttat 102  Q
    ||||||||| |||||||||  | |||  | || ||||||||||||||  ||| ||||||||||||||||||||    
T  2294956 cttattttcgtaagttctccaagatagtttatgaaaatagcttatagcttatccaaaaacaatttaactttat 2294884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 96
Target Start/End: Complemental strand, 2295141 - 2295078
Alignment:
Q  30 cttattttcctaagttctctgatatatatcataaaaatagcttatagaatatacaaaaacaatttaa 96  Q
    |||||||||  |||||||||||||||  | |||||||||||   ||| |||||||||||||||||||    
T  2295141 cttattttcacaagttctctgatatagcttataaaaatagc---tagcatatacaaaaacaatttaa 2295078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 117
Target Start/End: Original strand, 9572172 - 9572220
Alignment:
Q  69 gcttatagaatatacaaaaacaatttaactttatttcatctttttctat 117  Q
    ||||||||  ||||||||| |||||||||||||||| ||||||| ||||    
T  9572172 gcttatagcttatacaaaagcaatttaactttattttatcttttgctat 9572220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 74 - 216
Target Start/End: Complemental strand, 8147703 - 8147566
Alignment:
Q  74 tagaatatacaaaaacaatttaactttatttcatctttttctatnnnnnnntagcttatgtaagcttatgcgtaagcgcttttcatgataagcgcttgtg 173  Q
    |||||||||||||||||||| |||||||||| ||||||| ||||       |||||||||| ||||||||| ||||||||| ||||||||||||||        
T  8147703 tagaatatacaaaaacaattcaactttattttatcttttgctat--aaaaatagcttatgt-agcttatgcttaagcgcttatcatgataagcgct--aa 8147609  T
Q  174 tgataagccgcaaataagttgtttatccaaacaggcccatagt 216  Q
     | ||||| ||||||| ||||||||||||||||||||| ||||    
T  8147608 ggctaagctgcaaatatgttgtttatccaaacaggcccttagt 8147566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 70 - 208
Target Start/End: Complemental strand, 24626300 - 24626164
Alignment:
Q  70 cttatagaatatacaaaaacaatttaactttatttcatctttttctatnnnnnnntagcttatgtaagcttatgcgtaagcgcttttcatgataagcgct 169  Q
    ||||||||||||||||||||||||||||||| ||| ||| ||| ||||       |||||||||||||||||| | |||||  |  |||||||||||  |    
T  24626300 cttatagaatatacaaaaacaatttaactttgttttatcctttcctatagaaa--tagcttatgtaagcttatacataagcaatcatcatgataagcatt 24626203  T
Q  170 tgtgtgataagccgcaaataagttgtttatccaaacagg 208  Q
    ||||  |||||| | ||||||||||||||||||||||||    
T  24626202 tgtgctataagctgtaaataagttgtttatccaaacagg 24626164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 128 - 217
Target Start/End: Complemental strand, 6538466 - 6538377
Alignment:
Q  128 cttatgtaagcttatgcgtaagcgcttttcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacaggcccatagta 217  Q
    |||||| |||||||| | ||||||||| |||| ||||| |||||||  |||||| ||||||||| | |||||||||||||||||||||||    
T  6538466 cttatgcaagcttatacataagcgcttatcattataagtgcttgtgctataagctgcaaataagctatttatccaaacaggcccatagta 6538377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 136 - 208
Target Start/End: Complemental strand, 35069503 - 35069431
Alignment:
Q  136 agcttatgcgtaagcgcttttcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacagg 208  Q
    ||||||||| ||||| ||| ||||||||| ||||||||  |||||| |||||||||||||||||| |||||||    
T  35069503 agcttatgcataagcacttatcatgataaacgcttgtgctataagctgcaaataagttgtttatcaaaacagg 35069431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 125 - 211
Target Start/End: Complemental strand, 34430668 - 34430582
Alignment:
Q  125 tagcttatgtaagcttatgcgtaagcgcttttcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacaggccc 211  Q
    ||||||||| |||||||| | ||||||| | ||||||||||| ||||||  |||||| ||||||||| |||||||| ||||| ||||    
T  34430668 tagcttatggaagcttatacataagcgcctatcatgataagcacttgtgctataagctgcaaataagatgtttatcgaaacatgccc 34430582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 60 - 117
Target Start/End: Complemental strand, 4163190 - 4163133
Alignment:
Q  60 ataaaaatagcttatagaatatacaaaaacaatttaactttatttcatctttttctat 117  Q
    ||||||||||||||||  ||||||| ||||||||||||||||||| |||| |||||||    
T  4163190 ataaaaatagcttataacatatacacaaacaatttaactttattttatctatttctat 4163133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 60 - 117
Target Start/End: Complemental strand, 4224811 - 4224754
Alignment:
Q  60 ataaaaatagcttatagaatatacaaaaacaatttaactttatttcatctttttctat 117  Q
    ||||||||||||||||  ||||||| ||||||||||||||||||| |||| |||||||    
T  4224811 ataaaaatagcttataacatatacacaaacaatttaactttattttatctatttctat 4224754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 63 - 112
Target Start/End: Complemental strand, 2735081 - 2735032
Alignment:
Q  63 aaaatagcttatagaatatacaaaaacaatttaactttatttcatctttt 112  Q
    |||| |||||||||| |||||||||| ||||||||||||||| |||||||    
T  2735081 aaaacagcttatagattatacaaaaataatttaactttattttatctttt 2735032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 29 - 112
Target Start/End: Original strand, 9093580 - 9093663
Alignment:
Q  29 gcttattttcctaagttctctgatatatatcataaaaatagcttatagaatatacaaaaacaatttaactttatttcatctttt 112  Q
    |||||||||| |||||||||| | | |  | || |||| |||||||||  ||||| |||||||||||||||||||| |||||||    
T  9093580 gcttattttcttaagttctctaagacagcttatgaaaacagcttatagcttatacgaaaacaatttaactttattttatctttt 9093663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 125 - 211
Target Start/End: Complemental strand, 30926490 - 30926406
Alignment:
Q  125 tagcttatgtaagcttatgcgtaagcgcttttcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacaggccc 211  Q
    |||||||||||||||||| | |||  |||| ||||||||||| ||||||  |||||| || |  |||||||||||| ||||||||||    
T  30926490 tagcttatgtaagcttatacttaattgcttatcatgataagcccttgtgctataagctgcca--aagttgtttatctaaacaggccc 30926406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 104
Target Start/End: Original strand, 6909937 - 6909971
Alignment:
Q  70 cttatagaatatacaaaaacaatttaactttattt 104  Q
    ||||||| |||||||||||||||||||||||||||    
T  6909937 cttatagcatatacaaaaacaatttaactttattt 6909971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 112
Target Start/End: Original strand, 32206081 - 32206127
Alignment:
Q  66 atagcttatagaatatacaaaaacaatttaactttatttcatctttt 112  Q
    |||||||||||  ||||| |||| |||||||||||||||||||||||    
T  32206081 atagcttatagcttatactaaaataatttaactttatttcatctttt 32206127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 112
Target Start/End: Original strand, 28621184 - 28621217
Alignment:
Q  79 tatacaaaaacaatttaactttatttcatctttt 112  Q
    |||||||||||||||||||||||||| |||||||    
T  28621184 tatacaaaaacaatttaactttattttatctttt 28621217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 113
Target Start/End: Original strand, 430452 - 430484
Alignment:
Q  81 tacaaaaacaatttaactttatttcatcttttt 113  Q
    |||||||| ||||||||||||||||||||||||    
T  430452 tacaaaaataatttaactttatttcatcttttt 430484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 217
Target Start/End: Complemental strand, 848008 - 847928
Alignment:
Q  137 gcttatgcgtaagcgcttttcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacaggcccatagta 217  Q
    |||||| | ||||||||| | |||||||  |||||| | |||||| ||||| |||||||||||||||| ||| || |||||    
T  848008 gcttatacataagcgcttattatgataactgcttgtcttataagctgcaaaaaagttgtttatccaaagagggccttagta 847928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 173
Target Start/End: Original strand, 29754197 - 29754245
Alignment:
Q  125 tagcttatgtaagcttatgcgtaagcgcttttcatgataagcgcttgtg 173  Q
    ||||||||| ||||| || | ||||||||| ||||||||||||||||||    
T  29754197 tagcttatgcaagctaatacataagcgcttatcatgataagcgcttgtg 29754245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 70 - 216
Target Start/End: Original strand, 50681154 - 50681298
Alignment:
Q  70 cttatagaatatacaaaaacaatttaactttatttcatctttttctatnnnnnnntagcttatgtaagcttatgcgtaagcgcttttcatgataagcgct 169  Q
    ||||||| |||||||||||||||||||| |||||| ||||| | ||||       |||||| ||||||||||| | ||| ||||| ||||||||||  ||    
T  50681154 cttatagcatatacaaaaacaatttaacattattttatcttatcctataaaaa--tagcttttgtaagcttatacataaacgcttatcatgataagttct 50681251  T
Q  170 tgtgtgataagccgcaaataagttgtttatccaaacaggcccatagt 216  Q
    ||||  ||||||   |||||||||||||||||||||| |||| ||||    
T  50681252 tgtgctataagctataaataagttgtttatccaaacaagcccttagt 50681298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 136 - 206
Target Start/End: Original strand, 44863081 - 44863151
Alignment:
Q  136 agcttatgcgtaagcgcttttcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaaca 206  Q
    ||||||||| ||||| ||| |||||| ||| |||||||  |||||| ||||||||||||||||||||||||    
T  44863081 agcttatgcataagcacttatcatgacaagtgcttgtgctataagctgcaaataagttgtttatccaaaca 44863151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 29 - 107
Target Start/End: Original strand, 53294138 - 53294216
Alignment:
Q  29 gcttattttcctaagttctctgatatatatcataaaaatagcttatagaatatacaaaaacaatttaactttatttcat 107  Q
    |||| ||||| |||||||||| |||||  | ||||||| | ||||||| ||||||||||||||||||| ||||||||||    
T  53294138 gcttgttttcataagttctctaatatagtttataaaaacaacttatagcatatacaaaaacaatttaaatttatttcat 53294216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 84 - 214
Target Start/End: Complemental strand, 43505947 - 43505821
Alignment:
Q  84 aaaaacaatttaactttatttcatctttttctatnnnnnnntagcttatgtaagcttatgcgtaagcgcttttcatgataagcgcttgtgtgataagccg 183  Q
    |||||||||||||| |||||| ||||||| ||||       ||||||||| |||||||| | |||| |||| |||||||  ||| |||||  |||||  |    
T  43505947 aaaaacaatttaacgttattttatcttttgctataaaaa--tagcttatgcaagcttatacataagtgcttatcatgat--gcgtttgtgctataagttg 43505852  T
Q  184 caaataagttgtttatccaaacaggcccata 214  Q
    ||||||||||||||||||||||| |||||||    
T  43505851 caaataagttgtttatccaaacatgcccata 43505821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 26520284 - 26520336
Alignment:
Q  60 ataaaaatagcttatagaatatacaaaaacaatttaactttatttcatctttt 112  Q
    |||||||||||||||||  || || ||||||||||||||||||||||||||||    
T  26520284 ataaaaatagcttatagcttacacgaaaacaatttaactttatttcatctttt 26520336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 159 - 211
Target Start/End: Original strand, 45935365 - 45935417
Alignment:
Q  159 tgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacaggccc 211  Q
    ||||||||||||| |  |||||| |||||||||||||||||||||||||||||    
T  45935365 tgataagcgcttgagctataagctgcaaataagttgtttatccaaacaggccc 45935417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 156 - 216
Target Start/End: Original strand, 50662871 - 50662931
Alignment:
Q  156 tcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacaggcccatagt 216  Q
    ||||||||||| ||||||  |||||| |||||||||||||||||||||||| |||| ||||    
T  50662871 tcatgataagctcttgtgatataagctgcaaataagttgtttatccaaacatgcccttagt 50662931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 41 - 112
Target Start/End: Complemental strand, 20109043 - 20108972
Alignment:
Q  41 aagttctctgatatatatcataaaaatagcttatagaatatacaaaaacaatttaactttatttcatctttt 112  Q
    ||||||||| |||||| | ||||||| ||||||||  |||||||||||||| ||||||| |||| |||||||    
T  20109043 aagttctctaatatatcttataaaaacagcttataccatatacaaaaacaacttaacttcattttatctttt 20108972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 207
Target Start/End: Original strand, 27025 - 27083
Alignment:
Q  149 gcgcttttcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacag 207  Q
    |||||| ||||||||||||||||||  |||||| ||||| ||| |||||||||||||||    
T  27025 gcgcttatcatgataagcgcttgtgctataagctgcaaacaagatgtttatccaaacag 27083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 126 - 207
Target Start/End: Complemental strand, 17204089 - 17204008
Alignment:
Q  126 agcttatgtaagcttatgcgtaagcgcttttcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacag 207  Q
    |||||||||||||| |  | |||||| || || ||||||| ||||||   |||||| |||||||||||||||||||||||||    
T  17204089 agcttatgtaagctaacacataagcggttatcgtgataagtgcttgttctataagctgcaaataagttgtttatccaaacag 17204008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 60 - 117
Target Start/End: Complemental strand, 25332789 - 25332732
Alignment:
Q  60 ataaaaatagcttatagaatatacaaaaacaatttaactttatttcatctttttctat 117  Q
    |||||||||||||| ||  ||||||||||||||||||||| |||||| ||||| ||||    
T  25332789 ataaaaatagcttagagcttatacaaaaacaatttaacttcatttcaacttttactat 25332732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 63 - 207
Target Start/End: Original strand, 25904268 - 25904414
Alignment:
Q  63 aaaatagcttatagaatatacaaaaacaatttaactttatttcatctttttctatnnnnnnntagcttatgtaagcttatgcgtaagc----gcttttca 158  Q
    |||| ||||||||| | |||||||| |||||||||||||||| ||||||| || |       ||||||||||||||||||   ||| |    |||| |||    
T  25904268 aaaacagcttatagcaaatacaaaatcaatttaactttattttatcttttgctgt--aaaaatagcttatgtaagcttatatataatcacatgcttatca 25904365  T
Q  159 tgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacag 207  Q
    ||||||| |||||||  |||| | |||||| ||||||||||||||||||    
T  25904366 tgataagtgcttgtgctataatctgcaaatgagttgtttatccaaacag 25904414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 157 - 210
Target Start/End: Complemental strand, 44797812 - 44797759
Alignment:
Q  157 catgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacaggcc 210  Q
    |||||||| ||||||||  |||||  ||||||||||||||||||||||||||||    
T  44797812 catgataatcgcttgtgctataagttgcaaataagttgtttatccaaacaggcc 44797759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 31 - 114
Target Start/End: Complemental strand, 9760484 - 9760401
Alignment:
Q  31 ttattttcctaagttctctgatatatatcataaaaatagcttatagaatatacaaaaacaatttaactttatttcatctttttc 114  Q
    |||||||| |||||||||  |||||  | ||||||| | ||||||| ||||  ||||| ||||||||||||||| |||||||||    
T  9760484 ttattttcataagttctccaatatagcttataaaaacaacttatagcatattaaaaaagaatttaactttattttatctttttc 9760401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 62 - 117
Target Start/End: Complemental strand, 19494927 - 19494872
Alignment:
Q  62 aaaaatagcttatagaatatacaaaaacaatttaactttatttcatctttttctat 117  Q
    |||||||||||| || |||||||||||||||||| |||||||| ||| ||| ||||    
T  19494927 aaaaatagcttagagcatatacaaaaacaatttagctttattttatcatttgctat 19494872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 211
Target Start/End: Complemental strand, 24169213 - 24169127
Alignment:
Q  125 tagcttatgtaagcttatgcgtaagcgcttttcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacaggccc 211  Q
    ||||||||||||||| || | ||||||||  |||||||||| ||| |||  |||||| |||| |||| ||||| | |||||||||||    
T  24169213 tagcttatgtaagctcatacataagcgctaatcatgataagtgctggtgatataagctgcaagtaagctgtttctgcaaacaggccc 24169127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 117
Target Start/End: Complemental strand, 51630123 - 51630069
Alignment:
Q  63 aaaatagcttatagaatatacaaaaacaatttaactttatttcatctttttctat 117  Q
    ||||||||||||||  ||||  |||||||||||||||||||| ||||||| ||||    
T  51630123 aaaatagcttatagcttatatcaaaacaatttaactttattttatcttttgctat 51630069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 213
Target Start/End: Original strand, 437379 - 437436
Alignment:
Q  156 tcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacaggcccat 213  Q
    |||||||||  |||||| | |||||| |||||||||| |||||||||||||| |||||    
T  437379 tcatgataaaagcttgtattataagctgcaaataagtcgtttatccaaacagccccat 437436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 204
Target Start/End: Complemental strand, 3155539 - 3155486
Alignment:
Q  151 gcttttcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaa 204  Q
    |||| |||||||||||||||||   |||||| ||| ||||||||||||||||||    
T  3155539 gcttatcatgataagcgcttgtactataagctgcagataagttgtttatccaaa 3155486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 112
Target Start/End: Complemental strand, 17884064 - 17884031
Alignment:
Q  79 tatacaaaaacaatttaactttatttcatctttt 112  Q
    |||||||||||||||||||||||||| |||||||    
T  17884064 tatacaaaaacaatttaactttattttatctttt 17884031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 28300357 - 28300398
Alignment:
Q  63 aaaatagcttatagaatatacaaaaacaatttaactttattt 104  Q
    ||||||| ||||||  ||||||||||||||||||||||||||    
T  28300357 aaaatagtttatagcttatacaaaaacaatttaactttattt 28300398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 214
Target Start/End: Original strand, 34213730 - 34213775
Alignment:
Q  169 ttgtgtgataagccgcaaataagttgtttatccaaacaggcccata 214  Q
    |||||| |||||| |||||||||||| ||||||||||||| |||||    
T  34213730 ttgtgttataagctgcaaataagttgcttatccaaacaggaccata 34213775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 111
Target Start/End: Complemental strand, 41336757 - 41336724
Alignment:
Q  78 atatacaaaaacaatttaactttatttcatcttt 111  Q
    ||||||||||||||||||||||||||| ||||||    
T  41336757 atatacaaaaacaatttaactttattttatcttt 41336724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 42404053 - 42404110
Alignment:
Q  60 ataaaaatagcttatagaatatacaaaaacaatttaactttatttcatctttttctat 117  Q
    ||||||| |||||| || || ||||||||||||||||| |||||| ||||||| ||||    
T  42404053 ataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctat 42404110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 112
Target Start/End: Original strand, 54069483 - 54069524
Alignment:
Q  71 ttatagaatatacaaaaacaatttaactttatttcatctttt 112  Q
    |||||| |||||||||||||||||||| |||||| |||||||    
T  54069483 ttatagcatatacaaaaacaatttaacattattttatctttt 54069524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 54392877 - 54392918
Alignment:
Q  63 aaaatagcttatagaatatacaaaaacaatttaactttattt 104  Q
    |||| |||| |||| |||||||||||||||||||||||||||    
T  54392877 aaaacagctaatagcatatacaaaaacaatttaactttattt 54392918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 117
Target Start/End: Complemental strand, 3155597 - 3155561
Alignment:
Q  81 tacaaaaacaatttaactttatttcatctttttctat 117  Q
    |||||||||||||||||||||||| ||||||| ||||    
T  3155597 tacaaaaacaatttaactttattttatcttttgctat 3155561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 206
Target Start/End: Original strand, 47119086 - 47119134
Alignment:
Q  158 atgataagcgcttgtgtgataagccgcaaataagttgtttatccaaaca 206  Q
    |||||||| |||||||  |||||  ||||||||||||||||||||||||    
T  47119086 atgataagtgcttgtgctataagttgcaaataagttgtttatccaaaca 47119134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 125 - 211
Target Start/End: Complemental strand, 158059 - 157973
Alignment:
Q  125 tagcttatgtaagcttatgcgtaagcgcttttcatgataagcgcttgtgtgataagccgcaaataagttgtttatccaaacaggccc 211  Q
    ||||||||||||||| |||| |||||  || |||| ||||| | |||||  |||||| ||||||||| |||||||||||||||||||    
T  158059 tagcttatgtaagctaatgcataagcaattatcatcataagtgtttgtgctataagctgcaaataagctgtttatccaaacaggccc 157973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 48 times since January 2019
Visitors: 3673