View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0543_low_2 (Length: 976)

Name: NF0543_low_2
Description: NF0543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0543_low_2
NF0543_low_2
[»] chr5 (1 HSPs)
chr5 (84-878)||(4996426-4997221)


Alignment Details
Target: chr5 (Bit Score: 692; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 692; E-Value: 0
Query Start/End: Original strand, 84 - 878
Target Start/End: Complemental strand, 4997221 - 4996426
Alignment:
Q  84 atgaaggtgggagcagggtagcatggaatgtgaggaaatagcattaccaagaaaattggtagcaagtgaaagattttggagtgttggaatatgacagaaa 183  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  4997221 atgaaggtgggagcagggtagcatggaatgtgaggaaatagcattaccaagaaaattcgtagcaagtgaaagattttggagtgttggaatatgacagaaa 4997122  T
Q  184 ttagatggaca-tcatcataaataccggtttctgtgaggtcgattgatacaacggatttattccacgaatcgcaggttatgcctctccagttacaaggat 282  Q
    ||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  4997121 ttagatggaaaatcaccataaataccggtttctgtgaggtcgattgatacaacggatttattccgcgaatcgcaggttatgcctctccagttacaaggat 4997022  T
Q  283 tatgatctgtgtttggaagccaatcattgagacttttgtttttgtcatcaatttgtgtgttctttacatgaagaagaatttcatagtctcttgagagtga 382  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4997021 tatgatctgtgtttggaagccaatcattgagacttttgtttttgtcatcaatttgtgtgttctttacatgaagaagaatttcatagtctcttgagagtga 4996922  T
Q  383 aaaggtggttccatttgaacatagtagtgaaaagagaagaatgaaaatgagttttttcatgttgtgaat--ttttggtagtgtgtgtgagaggatgagaa 480  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  4996921 aaaggtggttccatttgaacatactagtgaaaagagaagaatgaaaatgagttttttcatgttgtgaatttttttggtagtgtgtgtgagaggatgagaa 4996822  T
Q  481 tgatcatg-ttttttgaaggggtgttaattttgtatttgtatagttgaagatgctgaagtttggtagtatgcgtcacacacttcttagtgattttcctcg 579  Q
    ||||| || ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  4996821 tgatcgtgtttttttgaaggggtgttaa-tttgtatttgtatagttgaagatgctaaagtttggtagtatgagtcacacacttcttagtgattttcctcg 4996723  T
Q  580 tgaataagtagaagctcctcttattcatgcatgaagatagagacagttcacaagattcactttagttgttgaacttgaagatagtaacaaaaaaggtctt 679  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4996722 tgaataagtagaagctcctcttattcatgcatgaagatagagacagttcacaagattcactttagttgttgaacttgaagatagtaacaaaaaaggtctt 4996623  T
Q  680 gnnnnnnnnngggattattatggagaaaagtgtgcaatcaatgatgaacggttggaaaaaggtttgaaagtggagggggaaacgtgattaagatttggat 779  Q
    |         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4996622 g--attttttgggattattatggagaaaagtgtgcaatcaatgatgaacggttggaaaaaggtttgaaagtggagggggaaacgtgattaagatttggat 4996525  T
Q  780 tcttttgaaaagttgaaaaagtgaatacttgaaagcaataagaattttgcatgagaaaccataagtgaagaacaagacacagccaaaggtagagtgtaa 878  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4996524 tcttttgaaaagttgaaaaagtgattacttgaaatcaataagaattttgcatgagaaaccataagtgaagaacaagacacagccaaaggtagagtgtaa 4996426  T

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