View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0543_low_21 (Length: 364)
Name: NF0543_low_21
Description: NF0543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0543_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 16 - 301
Target Start/End: Original strand, 37494962 - 37495247
Alignment:
| Q |
16 |
ggttctgctgttatgagaaaggcttcgaatactgatattgaagtgttgagtttgatgcgttctgttgctattggaactggagtaatgaagtgtaaggaaa |
115 |
Q |
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| T |
37494962 |
ggttatgctgttatgagaaaggcttcgaatactgatattgaagtgttgagtttgatgcgttctgttgctgttggaactggagtaatgaagtgtaaggaaa |
37495061 |
T |
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| Q |
116 |
ttgtgaataaagaagaagataatgaagttatgtatttgagaggtagttttaagagggttggtggtggatcttctgaatgtgaatcttttcatttgattga |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37495062 |
ttgtgaataaagaagaagataatgaagttatgtatttgagaggtagttttaagagggttggtggtggatcttctgaatgtgaatcttttcatttgattga |
37495161 |
T |
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| Q |
216 |
tcctgagggagatcataatatgcaccaggagcttagtattttctttttgaggtcaatgtaacgattaattaattaattaccttaat |
301 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37495162 |
tcctgagggagatcataatattcaccaggagcttagtattttctttttgaggtcaatgtaacgattaattaattaattaccttaat |
37495247 |
T |
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Back To:
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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 221
Target Start/End: Original strand, 39308105 - 39308133
Alignment:
| Q |
193 |
tgtgaatcttttcatttgattgatcctga |
221 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
39308105 |
tgtgaatcttttcatttgattgatcctga |
39308133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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