View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0543_low_25 (Length: 310)
Name: NF0543_low_25
Description: NF0543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0543_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 1350847 - 1350565
Alignment:
| Q |
1 |
ctcactctcttctttccacaaattgcattgaatagattcaaatccattattttctgaaattttatcaaggaacaaatcaagtgggcctaatgtgtagagt |
100 |
Q |
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| T |
1350847 |
ctcactctcttctttccacaaattgcattgaatagattcaaatccattattttctgaaattttatcaaggaacaaatcaagtgggcctaatgtgtagagt |
1350748 |
T |
|
| Q |
101 |
ttaggaaacattgtggagagctcattcaatacatcatactccagggcatcaaaagttggtagaataatagcagaagcttttgaagctgcttctatttgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1350747 |
ttaggaaacattgtggagagctcattcaatacatcatactccagggcatcaaaagttggtagaataatagcagaagcttttgaagctgcttctatttgtt |
1350648 |
T |
|
| Q |
201 |
ctataacaaagtccaaaagtgtatcatttggatctgttgtgtgatatatgcctggaaggtttcttaaagtaatgttcttcatg |
283 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1350647 |
ctgtaacaaagtccaaaagtgtatcatttggatctgttgtgtgatatatgcctggaaggtttcttaaagtaatgttcttcatg |
1350565 |
T |
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