View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0543_low_31 (Length: 279)

Name: NF0543_low_31
Description: NF0543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0543_low_31
NF0543_low_31
[»] chr5 (1 HSPs)
chr5 (12-279)||(4996269-4996536)


Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 12 - 279
Target Start/End: Original strand, 4996269 - 4996536
Alignment:
Q  12 agagacaataacatagtcaacatgttcatcaaatcatctccaaaatgtttcacatctctctctagtactatacaaatttcataggttgtccaaatttctt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4996269 agagacaataacatagtcaacatgttcatcaaatcatctccaaaatgtttcacatctctctctagtactatacaaatttcataggttgtccaaatttctt 4996368  T
Q  112 aaccttatcctatccccaagaatgattcttcttctggaagtaataatgctttaccccttacactctacctttggctgtgtcttgttcttcacttatggtt 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4996369 aaccttatcctatccccaagaatgattcttcttctggaagtaataatgctttaccccttacactctacctttggctgtgtcttgttcttcacttatggtt 4996468  T
Q  212 tctcatgcaaaattcttattgctttcaagtattcactttttcaacttttcaaaagaatccaaatctta 279  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  4996469 tctcatgcaaaattcttattgatttcaagtaatcactttttcaacttttcaaaagaatccaaatctta 4996536  T

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