View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0543_low_32 (Length: 274)
Name: NF0543_low_32
Description: NF0543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0543_low_32 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 157; Significance: 2e-83; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 118 - 274
Target Start/End: Original strand, 31139838 - 31139994
Alignment:
| Q |
118 |
gagaacttttacttcacaaggtaaaaatcttcacaatttctcaagaaatcgagaccattactatagttttggagtgattaatgatataaatgcaaacact |
217 |
Q |
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| T |
31139838 |
gagaacttttacttcacaaggtaaaaatcttcacaatttctcaagaaatcgagaccattactatagttttggagtgattaatgatataaatgcaaacact |
31139937 |
T |
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| Q |
218 |
tctagaattagttacattaattaaaagaacaattttcttggggggaaatagagatct |
274 |
Q |
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| T |
31139938 |
tctagaattagttacattaattaaaagaacaattttcttggggggaaatagagatct |
31139994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 53 - 274
Target Start/End: Complemental strand, 31101231 - 31101009
Alignment:
| Q |
53 |
gtaagaaacaatgtgtaacagtatctgaaatgacaacttgtattactgtnnnnnnnnnnnnnnnn-gagaacttttacttcacaaggtaaaaatcttcac |
151 |
Q |
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| T |
31101231 |
gtaagaaacaatgtgtaacagtatctaaaatgacaacttgtattgctgtaaaaaaaaaaaaaaaaagagaacttttacttcacaaggtaaaaatcttcac |
31101132 |
T |
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| Q |
152 |
aatttctcaagaaatcgagaccattactatagttttggagtgattaatgatataaatgcaaacacttctagaattagttacattaattaaaagaacaatt |
251 |
Q |
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| T |
31101131 |
aatttctcaagaaatcgagaccattgctatagttttggagtgattaatgatataaatgcaaacacttctagaattagttacattaattaaaagaacaatt |
31101032 |
T |
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| Q |
252 |
ttcttggggggaaatagagatct |
274 |
Q |
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| T |
31101031 |
ttcttggggggaaatagagatct |
31101009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 31139766 - 31139814
Alignment:
| Q |
53 |
gtaagaaacaatgtgtaacagtatctgaaatgacaacttgtattactgt |
101 |
Q |
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| T |
31139766 |
gtaagaaacaatgtgtaacagtatctgaaatgacaacttgtattactgt |
31139814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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