View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0543_low_35 (Length: 260)
Name: NF0543_low_35
Description: NF0543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0543_low_35 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 30 - 260
Target Start/End: Original strand, 45041548 - 45041778
Alignment:
| Q |
30 |
gaaagttcatctccttccaactccatgcctccaccactgctgaacaaatcaaaatcttcaaaatcatcacttgctctagcatgagtactgcttcctaaac |
129 |
Q |
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| T |
45041548 |
gaaagttcatctccttccaactccatgcctccaccactgctgaacaaatcaaaatcttcaaaatcatcacttgctctagcatgagcactgcctcctaaac |
45041647 |
T |
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| Q |
130 |
catcggtgacaccggaaaacagatcatcttcgtcgggaaggagatcccctatagtgtcagcctcaatttcttcaagagatttgtatggttcttcctcggg |
229 |
Q |
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| T |
45041648 |
catcggtgacaccggaaaacagatcatcttcgtcgggaaggagatcccctatagtgtcagcctcaatttcttcaagagatttgtatggttcttcctcggg |
45041747 |
T |
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| Q |
230 |
aagagaaccagcagtaatattctgatcagac |
260 |
Q |
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| T |
45041748 |
aagagaaccagcagtaatattctgatcagac |
45041778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 80 - 189
Target Start/End: Original strand, 47031718 - 47031827
Alignment:
| Q |
80 |
aaaatcttcaaaatcatcacttgctctagcatgagtactgcttcctaaaccatcggtgacaccggaaaacagatcatcttcgtcgggaaggagatcccct |
179 |
Q |
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|||||||||||||||||||||||||| |||||||| |||||||||||||||||| || |||||||||||||||||||||||||| | ||||||||||||| |
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| T |
47031718 |
aaaatcttcaaaatcatcacttgctccagcatgagcactgcttcctaaaccatcagtaacaccggaaaacagatcatcttcgtcagaaaggagatcccct |
47031817 |
T |
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| Q |
180 |
atagtgtcag |
189 |
Q |
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| T |
47031818 |
gtagtgtcag |
47031827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 237
Target Start/End: Original strand, 40161715 - 40161814
Alignment:
| Q |
138 |
acaccggaaaacagatcatcttcgtcgggaaggagatcccctatagtgtcagcctcaatttcttcaagagatttgtatggttcttcctcgggaagagaac |
237 |
Q |
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| T |
40161715 |
acaccagaaaatagatcatcttcatcaggaaggagattatgtatatagtcagcctccatctgttcaagagatttatatggttcttcctcaagaagagaac |
40161814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 70
Target Start/End: Original strand, 40161611 - 40161647
Alignment:
| Q |
34 |
gttcatctccttccaactccatgcctccaccactgct |
70 |
Q |
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| T |
40161611 |
gttcatctccttccagctccatgcctccaccgctgct |
40161647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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