View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0543_low_41 (Length: 252)
Name: NF0543_low_41
Description: NF0543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0543_low_41 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 31139850 - 31140091
Alignment:
| Q |
1 |
ttcacaaggtaaaaatcttcacaatttctcaagaaatcgagaccattactatagttttggagtgattaatgatataaatgcaaacacttctagaattagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31139850 |
ttcacaaggtaaaaatcttcacaatttctcaagaaatcgagaccattactatagttttggagtgattaatgatataaatgcaaacacttctagaattagt |
31139949 |
T |
|
| Q |
101 |
tacattaattaaaagaacaattttcttggggggaaatagagatctaatctccatttcacttcaatgatacacacattttttaagactaacttaactgcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31139950 |
tacattaattaaaagaacaattttcttggggggaaatagagatctaatctccatttcacttcaatgatacacacattttttaagactaacttaactgcaa |
31140049 |
T |
|
| Q |
201 |
tatatgttagacattttacaataatacataaacatatctctg |
242 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31140050 |
tatatgttagacattttacaataatacataaacatatgtctg |
31140091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 31101153 - 31100954
Alignment:
| Q |
1 |
ttcacaaggtaaaaatcttcacaatttctcaagaaatcgagaccattactatagttttggagtgattaatgatataaatgcaaacacttctagaattagt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31101153 |
ttcacaaggtaaaaatcttcacaatttctcaagaaatcgagaccattgctatagttttggagtgattaatgatataaatgcaaacacttctagaattagt |
31101054 |
T |
|
| Q |
101 |
tacattaattaaaagaacaattttcttggggggaaatagagatctaatctccatttcacttcaatgatacacacattttttaagactaacttaactgcaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31101053 |
tacattaattaaaagaacaattttcttggggggaaatagagatctaatctccatttcacttcaatgatacacacattttttaagactaacttaacagcaa |
31100954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 232
Target Start/End: Complemental strand, 31100884 - 31100852
Alignment:
| Q |
200 |
atatatgttagacattttacaataatacataaa |
232 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |
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|
| T |
31100884 |
atatatattagacattttacaataatacataaa |
31100852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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