View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0543_low_5 (Length: 823)
Name: NF0543_low_5
Description: NF0543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0543_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 642; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 642; E-Value: 0
Query Start/End: Original strand, 101 - 813
Target Start/End: Complemental strand, 48411549 - 48410824
Alignment:
| Q |
101 |
gattcatggatgctgagaaggaaatatttgatatggtatacaacggtgaaaacagtatatatgccctctcacagccaaagaatgaggtgaactgtttata |
200 |
Q |
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| T |
48411549 |
gattgatggatgctgagaaggaaatatttgatatggtatacaacggtgaaaacagtatatatgccctctcacagccaaagaatgaggtgaactgtttata |
48411450 |
T |
|
| Q |
201 |
ttttgccgagggttctgggggtctgtctgtttgggataacaggataggaaaatgttcgtcccaatgggatttgcatgaaagtaggattaatacaatagat |
300 |
Q |
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| T |
48411449 |
ttttgccgagggttctgggggtctgtctgtttgggataacaggataggaaaatgttcgtcccaatgggatttgcatgaaagtaggattaatacaatagat |
48411350 |
T |
|
| Q |
301 |
ttcagcccgcaaaccactcatattgtagctaccagttcctctgatggaactgcatgtacctgggatttgagatctattgggggtcctaagcacacatcct |
400 |
Q |
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| T |
48411349 |
ttcagcccgcaaaccactcatattgtagctaccagttcctctgatggaactgcatgtacctgggatttgagatctattgggggtcctaagcacacatcct |
48411250 |
T |
|
| Q |
401 |
tgaggacatttactcacaaaaggtctgtgcaatcggcctatttttcgccttctggatgcagccttgccactacaaggtatgaggcctttgttccattttt |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48411249 |
tgaggacatttactcacaaaaggtctgtgcaatcggcctatttttcgccttctggatgcagccttgccactacaaggtatgaggcctttgttccattttt |
48411150 |
T |
|
| Q |
501 |
aatatcactagattccatgtgaatatgcttacttgtatggcctattacttattgttttgataactgtagtcggcatgttaactagattccaannnnnnnn |
600 |
Q |
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| T |
48411149 |
aatatcactagattccatgtgaatatgcttacttgtatggcctattacttattgttttgataactgtagtcggcatgttaactagattcctttttttttt |
48411050 |
T |
|
| Q |
601 |
gtgattcgtaattattttgagccgggtttttgttaactgtgaat-------------ttgatggattttgttaattatagcctggacaatactattggta |
687 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
48411049 |
gtgattcgtaattattttgagccgggtttttgttaactgtgaatttgatggattgagttgatggattttgttaattgtagcctggacaatactattggta |
48410950 |
T |
|
| Q |
688 |
tatacggtggtgttaacttagaggataaaatttccgtttatcatgacaatcagaccggaagatggatttcaactttcaggtgcggtttctggggaagtat |
787 |
Q |
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| T |
48410949 |
tatacggtggtgttaacttagaggataaaatttccgtttatcatgacaatcagaccggaagatggatttcaactttcaggtgcggtttctggggaagtat |
48410850 |
T |
|
| Q |
788 |
tgaatatttaagttgttatagtatta |
813 |
Q |
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| T |
48410849 |
tgaatatttaagttgttatagtatta |
48410824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 155 - 380
Target Start/End: Complemental strand, 48418138 - 48417907
Alignment:
| Q |
155 |
gtatatatgccctctcacagccaaagaatgaggtgaactgtttatattttgccgagggttctgggggtctgtctgtttgggataacaggataggaaaatg |
254 |
Q |
| |
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|||||||||| ||||||||||| |||||||||| |||||||||||||| || ||||||||||| | || ||||||||||||| |||||||||||||| |
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| T |
48418138 |
gtatatatgctctctcacagcccaagaatgaggcaaactgtttatatttagctgagggttctggatatttgactgtttgggataataggataggaaaatg |
48418039 |
T |
|
| Q |
255 |
------ttcgtcccaatgggatttgcatgaaagtaggattaatacaatagatttcagcccgcaaaccactcatattgtagctaccagttcctctgatgga |
348 |
Q |
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|||||||| | ||||||||| || |||||||||||||||||||||| ||| ||| | |||| |||| | ||||||||| ||||||||| |
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| T |
48418038 |
ttcgtcttcgtcccgcttagatttgcatcaattgaggattaatacaatagatttcaaccctgaaaaccctcacattggtgttaccagttcatctgatgga |
48417939 |
T |
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| Q |
349 |
actgcatgtacctgggatttgagatctattgg |
380 |
Q |
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|||||||||||||| ||||| |||| |||||| |
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| T |
48417938 |
actgcatgtacctgagatttcagatgtattgg |
48417907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 4e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 100 - 205
Target Start/End: Complemental strand, 28396987 - 28396883
Alignment:
| Q |
100 |
agattcatggatgctgagaaggaaatatttgatatggtatacaacggtgaaaacagtatatatgccctctcacagccaaagaatgaggtgaactgtttat |
199 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||| | |||||||||| |
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| T |
28396987 |
agattgatggatgctgagaaggaaatatttgatatggtatacaacggtgaaaacaaaatatatg-cctctcacaggcaaagaatgaagcaaactgtttat |
28396889 |
T |
|
| Q |
200 |
attttg |
205 |
Q |
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|||||| |
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| T |
28396888 |
attttg |
28396883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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