View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0543_low_6 (Length: 621)
Name: NF0543_low_6
Description: NF0543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0543_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 467; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 29 - 609
Target Start/End: Complemental strand, 34229448 - 34228875
Alignment:
| Q |
29 |
acattgaactcatcgagttacaaacgtggacgagtcggaatgcagcctcgacaaattctccataacaaatgactcgccttctgtggggcgtaaacactcc |
128 |
Q |
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| T |
34229448 |
acattgaactcatcgagttataaacgtggacgagtcggaatgcagcctcgaaaagttctccatatcaaatgacgggccttcggtggggcctaaacactcc |
34229349 |
T |
|
| Q |
129 |
gcaaatcatttcagtcaacatcaacatgaagttggacaaccaaaccaacttatcagtttataccccgacttaatcaaatagcaactatttcgatcctcat |
228 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
34229348 |
acaaatcatttcagtcaacatcaacatatagttggacaaccaaaccaacttatcagattataccccgacttaatcaaataacaactatttcgatcctcat |
34229249 |
T |
|
| Q |
229 |
cccaaaccaacttatcctcatacagcgaatgaattaaagggacaacgaaaatagagtatacagtttgcagtttcatctgtgaaaattatgaactttgtca |
328 |
Q |
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||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34229248 |
cccaaaccaacttatcctcatgcagcgaatgaaataaagggacagcgaaaatagagtatacagtttgcagtttcatctgtgaaaattatgaactttgtca |
34229149 |
T |
|
| Q |
329 |
aatgtcaatatcccaatgtctctccccaattactatcaattgattaacatgcatgttatacacaccttggttttggtgtgattgcaaccattttcctttg |
428 |
Q |
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| |||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
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| T |
34229148 |
a-------tatcccaatgtctctctccaattactatcaattgattagcatgcatgttaaacacaccttggttttggtgtgattgcagccattttcctttg |
34229056 |
T |
|
| Q |
429 |
tctcctttgagcaatgaatccatcatgattctaacattactaccatcaccaatccgccatctacaaccatgtaaaatcacatatctagtattccaaatac |
528 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34229055 |
tctcctctgagcaatgaatccatcatgattctaacattactaccatcaccaatccgccatctacaaccatgtaaaatcacatatctagtattccaaatac |
34228956 |
T |
|
| Q |
529 |
tactctaggcataactagggctgtgactaatgtcagcttcaagaaaaaatatgtgtgaagaaagtatcttgctttgagaat |
609 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34228955 |
tacgctaggcataactagggctgtgactaatgtcagcttcaagaaaaaatatgtgtgaagaaagtatcttgctttgagaat |
34228875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 554 - 609
Target Start/End: Complemental strand, 34237548 - 34237495
Alignment:
| Q |
554 |
actaatgtcagcttcaagaaaaaatatgtgtgaagaaagtatcttgctttgagaat |
609 |
Q |
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|||||||||||||||||||||| |||||||| ||||||||| ||| ||||||||| |
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| T |
34237548 |
actaatgtcagcttcaagaaaa--tatgtgtggagaaagtatattgatttgagaat |
34237495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 452 - 529
Target Start/End: Original strand, 46889100 - 46889177
Alignment:
| Q |
452 |
catgattctaacattactaccatcaccaatccgccatctacaaccatgtaaaatcacatatctagtattccaaatact |
529 |
Q |
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||||||||||||||| ||||||||||||||| |||||||||| ||||| ||| ||||| ||||| |||||||||||| |
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| T |
46889100 |
catgattctaacattcttaccatcaccaatcctccatctacaagcatgtgaaaacacatgtctagaattccaaatact |
46889177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 470 - 504
Target Start/End: Complemental strand, 42093134 - 42093100
Alignment:
| Q |
470 |
accatcaccaatccgccatctacaaccatgtaaaa |
504 |
Q |
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|||||||||||||| |||||||||||||||||||| |
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| T |
42093134 |
accatcaccaatcctccatctacaaccatgtaaaa |
42093100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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