View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0543_low_8 (Length: 617)
Name: NF0543_low_8
Description: NF0543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0543_low_8 |
 | |
|
| [»] scaffold1037 (2 HSPs) |
| | |
|
| [»] scaffold1031 (2 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 15)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 148 - 611
Target Start/End: Complemental strand, 216819 - 216356
Alignment:
| Q |
148 |
ttccttgcttttcaacgnnnnnnnncttcaaatacagtgaagcttgttgtggtggttttccatattcgaatttattttgttgttgtgatgttccagatct |
247 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| || | ||||| |||||||||||||||||||||||||| |
|
|
| T |
216819 |
ttccttgcttttcaacgttttttttcttcaaatatagtgaagcttgttgtggtggttttccagatccaaatttgttttgttgttgtgatgttccagatct |
216720 |
T |
|
| Q |
248 |
caacttttaggaagaaaagattggtgaagatgaatgatttgtttgaagaacacataaatgaatgaatgaagatgaatagttgggtttcacaattagattt |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
216719 |
caacttttaggaagaaaagattggtgaagatgagtgatttgtttgaagaacacataaatgaatgaatgaagatgaatagttgggtttcacaattagatcc |
216620 |
T |
|
| Q |
348 |
ctttctctttattttgattcaagaatatttttgaagggaaaaataaattgagatgaaattttcatagggtgacaataataaactaagttgttaaggttag |
447 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
216619 |
ctttctctttattttgattcaagaatatttttgaagggaaaaataaattgagatgaaattttcattgggtgacgataataaactaagttgttaaggttag |
216520 |
T |
|
| Q |
448 |
agatgatgtgnnnnnnntagagtgtggatagactatagtaacaatggtggtactactcaatctaatggttnnnnnnngactttcccatggtaaaaaagaa |
547 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| || |||||| |
|
|
| T |
216519 |
agatgatgtgaaaaaaataaagtgtggatagactatagtaacaatggtggtactactcaatctaatggttaaaaaaagacttttccatagtgggaaagaa |
216420 |
T |
|
| Q |
548 |
gtatcatttcccagattaaatgacacccaaagtcaattaaatatactctttttatattattgga |
611 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||||||||||| |||| | |||||||| |
|
|
| T |
216419 |
gtattctttcccagattaaatggcacccaaagtcaattaaatatactccttttgttttattgga |
216356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 148 - 611
Target Start/End: Complemental strand, 693379 - 692916
Alignment:
| Q |
148 |
ttccttgcttttcaacgnnnnnnnncttcaaatacagtgaagcttgttgtggtggttttccatattcgaatttattttgttgttgtgatgttccagatct |
247 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| || | ||||| |||||||||||||||||||||||||| |
|
|
| T |
693379 |
ttccttgcttttcaacgttttttttcttcaaatatagtgaagcttgttgtggtggttttccagatccaaatttgttttgttgttgtgatgttccagatct |
693280 |
T |
|
| Q |
248 |
caacttttaggaagaaaagattggtgaagatgaatgatttgtttgaagaacacataaatgaatgaatgaagatgaatagttgggtttcacaattagattt |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
693279 |
caacttttaggaagaaaagattggtgaagatgagtgatttgtttgaagaacacataaatgaatgaatgaagatgaatagttgggtttcacaattagatcc |
693180 |
T |
|
| Q |
348 |
ctttctctttattttgattcaagaatatttttgaagggaaaaataaattgagatgaaattttcatagggtgacaataataaactaagttgttaaggttag |
447 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
693179 |
ctttctctttattttgattcaagaatatttttgaagggaaaaataaattgagatgaaattttcattgggtgacgataataaactaagttgttaaggttag |
693080 |
T |
|
| Q |
448 |
agatgatgtgnnnnnnntagagtgtggatagactatagtaacaatggtggtactactcaatctaatggttnnnnnnngactttcccatggtaaaaaagaa |
547 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| || |||||| |
|
|
| T |
693079 |
agatgatgtgaaaaaaataaagtgtggatagactatagtaacaatggtggtactactcaatctaatggttaaaaaaagacttttccatagtgggaaagaa |
692980 |
T |
|
| Q |
548 |
gtatcatttcccagattaaatgacacccaaagtcaattaaatatactctttttatattattgga |
611 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||||||||||| |||| | |||||||| |
|
|
| T |
692979 |
gtattctttcccagattaaatggcacccaaagtcaattaaatatactccttttgttttattgga |
692916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 148 - 611
Target Start/End: Complemental strand, 697588 - 697125
Alignment:
| Q |
148 |
ttccttgcttttcaacgnnnnnnnncttcaaatacagtgaagcttgttgtggtggttttccatattcgaatttattttgttgttgtgatgttccagatct |
247 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| || | ||||| |||||||||||||||||||||||||| |
|
|
| T |
697588 |
ttccttgcttttcaacgttttttttcttcaaatatagtgaagcttgttgtggtggttttccagatccaaatttgttttgttgttgtgatgttccagatct |
697489 |
T |
|
| Q |
248 |
caacttttaggaagaaaagattggtgaagatgaatgatttgtttgaagaacacataaatgaatgaatgaagatgaatagttgggtttcacaattagattt |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
697488 |
caacttttaggaagaaaagattggtgaagatgagtgatttgtttgaagaacacataaatgaatgaatgaagatgaatagttgggtttcacaattagatcc |
697389 |
T |
|
| Q |
348 |
ctttctctttattttgattcaagaatatttttgaagggaaaaataaattgagatgaaattttcatagggtgacaataataaactaagttgttaaggttag |
447 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
697388 |
ctttctctttattttgattcaagaatatttttgaagggaaaaataaattgagatgaaattttcattgggtgacgataataaactaagttgttaaggttag |
697289 |
T |
|
| Q |
448 |
agatgatgtgnnnnnnntagagtgtggatagactatagtaacaatggtggtactactcaatctaatggttnnnnnnngactttcccatggtaaaaaagaa |
547 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| || |||||| |
|
|
| T |
697288 |
agatgatgtgaaaaaaataaagtgtggatagactatagtaacaatggtggtactactcaatctaatggttaaaaaaagacttttccatagtgggaaagaa |
697189 |
T |
|
| Q |
548 |
gtatcatttcccagattaaatgacacccaaagtcaattaaatatactctttttatattattgga |
611 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||||||||||| |||| | |||||||| |
|
|
| T |
697188 |
gtattctttcccagattaaatggcacccaaagtcaattaaatatactccttttgttttattgga |
697125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 148 - 611
Target Start/End: Complemental strand, 730442 - 729979
Alignment:
| Q |
148 |
ttccttgcttttcaacgnnnnnnnncttcaaatacagtgaagcttgttgtggtggttttccatattcgaatttattttgttgttgtgatgttccagatct |
247 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| || | ||||| |||||||||||||||||||||||||| |
|
|
| T |
730442 |
ttccttgcttttcaacgttttttttcttcaaatatagtgaagcttgttgtggtggttttccagatccaaatttgttttgttgttgtgatgttccagatct |
730343 |
T |
|
| Q |
248 |
caacttttaggaagaaaagattggtgaagatgaatgatttgtttgaagaacacataaatgaatgaatgaagatgaatagttgggtttcacaattagattt |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
730342 |
caacttttaggaagaaaagattggtgaagatgagtgatttgtttgaagaacacataaatgaatgaatgaagatgaatagttgggtttcacaattagatcc |
730243 |
T |
|
| Q |
348 |
ctttctctttattttgattcaagaatatttttgaagggaaaaataaattgagatgaaattttcatagggtgacaataataaactaagttgttaaggttag |
447 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
730242 |
ctttctctttattttgattcaagaatatttttgaagggaaaaataaattgagatgaaattttcattgggtgacgataataaactaagttgttaaggttag |
730143 |
T |
|
| Q |
448 |
agatgatgtgnnnnnnntagagtgtggatagactatagtaacaatggtggtactactcaatctaatggttnnnnnnngactttcccatggtaaaaaagaa |
547 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| || |||||| |
|
|
| T |
730142 |
agatgatgtgaaaaaaataaagtgtggatagactatagtaacaatggtggtactactcaatctaatggttaaaaaaagacttttccatagtgggaaagaa |
730043 |
T |
|
| Q |
548 |
gtatcatttcccagattaaatgacacccaaagtcaattaaatatactctttttatattattgga |
611 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||||||||||| |||| | |||||||| |
|
|
| T |
730042 |
gtattctttcccagattaaatggcacccaaagtcaattaaatatactccttttgttttattgga |
729979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 148 - 611
Target Start/End: Complemental strand, 854337 - 853874
Alignment:
| Q |
148 |
ttccttgcttttcaacgnnnnnnnncttcaaatacagtgaagcttgttgtggtggttttccatattcgaatttattttgttgttgtgatgttccagatct |
247 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| || | ||||| |||||||||||||||||||||||||| |
|
|
| T |
854337 |
ttccttgcttttcaacgttttttttcttcaaatatagtgaagcttgttgtggtggttttccagatccaaatttgttttgttgttgtgatgttccagatct |
854238 |
T |
|
| Q |
248 |
caacttttaggaagaaaagattggtgaagatgaatgatttgtttgaagaacacataaatgaatgaatgaagatgaatagttgggtttcacaattagattt |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
854237 |
caacttttaggaagaaaagattggtgaagatgagtgatttgtttgaagaacacataaatgaatgaatgaagatgaatagttgggtttcacaattagatcc |
854138 |
T |
|
| Q |
348 |
ctttctctttattttgattcaagaatatttttgaagggaaaaataaattgagatgaaattttcatagggtgacaataataaactaagttgttaaggttag |
447 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
854137 |
ctttctctttattttgattcaagaatatttttgaagggaaaaataaattgagatgaaattttcattgggtgacgataataaactaagttgttaaggttag |
854038 |
T |
|
| Q |
448 |
agatgatgtgnnnnnnntagagtgtggatagactatagtaacaatggtggtactactcaatctaatggttnnnnnnngactttcccatggtaaaaaagaa |
547 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| || |||||| |
|
|
| T |
854037 |
agatgatgtgaaaaaaataaagtgtggatagactatagtaacaatggtggtactactcaatctaatggttaaaaaaagacttttccatagtgggaaagaa |
853938 |
T |
|
| Q |
548 |
gtatcatttcccagattaaatgacacccaaagtcaattaaatatactctttttatattattgga |
611 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||||||||||| |||| | |||||||| |
|
|
| T |
853937 |
gtattctttcccagattaaatggcacccaaagtcaattaaatatactccttttgttttattgga |
853874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 436 - 516
Target Start/End: Original strand, 1366523 - 1366603
Alignment:
| Q |
436 |
tgttaaggttagagatgatgtgnnnnnnntagagtgtggatagactatagtaacaatggtggtactactcaatctaatggt |
516 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
1366523 |
tgttaaggttagagatgatgtgaagaaaatatagtgtggatagactataataacaatggtggtactactcaatctaatggt |
1366603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 436 - 514
Target Start/End: Original strand, 62150 - 62228
Alignment:
| Q |
436 |
tgttaaggttagagatgatgtgnnnnnnntagagtgtggatagactatagtaacaatggtggtactactcaatctaatg |
514 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
62150 |
tgttaaggttagagatgatgtgaagaaaatatagtgtggatagactataataacaatggtggtactactcaatctaatg |
62228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 434 - 516
Target Start/End: Original strand, 44752478 - 44752560
Alignment:
| Q |
434 |
gttgttaaggttagagatgatgtgnnnnnnntagagtgtggatagactatagtaacaatggtggtactactcaatctaatggt |
516 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
44752478 |
gttgttaaggttagagatgatgtgaagaaaatatagtgtggatagactataataacaatggtggtactactcaatttaatggt |
44752560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 434 - 516
Target Start/End: Complemental strand, 12351203 - 12351121
Alignment:
| Q |
434 |
gttgttaaggttagagatgatgtgnnnnnnntagagtgtggatagactatagtaacaatggtggtactactcaatctaatggt |
516 |
Q |
| |
|
||||||||| ||||| |||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
12351203 |
gttgttaagtttagaaatgatgtgaagaaaatatagtgtggatagactataataacaatggtggtactactcaatctaatggt |
12351121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 434 - 578
Target Start/End: Complemental strand, 39254929 - 39254783
Alignment:
| Q |
434 |
gttgttaaggttagagatgatgtgnnnnnnntagagtgtg--gatagactatagtaacaatggtggtactactcaatctaatggttnnnnnnngactttc |
531 |
Q |
| |
|
|||||||||||||||||||||||| || |||||| ||||||||||| |||||||| |||||||||||||||||||| | ||||||| |
|
|
| T |
39254929 |
gttgttaaggttagagatgatgtgaagaaaatatagtgtgtggatagactataataacaatgatggtactactcaatctaatgataaaaaaaagactttc |
39254830 |
T |
|
| Q |
532 |
ccatggtaaaaaagaagtatcatttcccagattaaatgacacccaaa |
578 |
Q |
| |
|
| ||||| |||||||| || ||||||| |||||||| |||||||| |
|
|
| T |
39254829 |
ctatggtgggaaagaagtctcctttcccaaattaaatgccacccaaa |
39254783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 216966 - 216932
Alignment:
| Q |
1 |
cattgagatttttcaaatacataaatgtagatcat |
35 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
216966 |
cattgagatttttcaaatacataaatgtagatcat |
216932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 693526 - 693492
Alignment:
| Q |
1 |
cattgagatttttcaaatacataaatgtagatcat |
35 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
693526 |
cattgagatttttcaaatacataaatgtagatcat |
693492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 697735 - 697701
Alignment:
| Q |
1 |
cattgagatttttcaaatacataaatgtagatcat |
35 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
697735 |
cattgagatttttcaaatacataaatgtagatcat |
697701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 730589 - 730555
Alignment:
| Q |
1 |
cattgagatttttcaaatacataaatgtagatcat |
35 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
730589 |
cattgagatttttcaaatacataaatgtagatcat |
730555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 854484 - 854450
Alignment:
| Q |
1 |
cattgagatttttcaaatacataaatgtagatcat |
35 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
854484 |
cattgagatttttcaaatacataaatgtagatcat |
854450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 173 - 574
Target Start/End: Original strand, 43738121 - 43738521
Alignment:
| Q |
173 |
cttcaaatacagtgaagcttgttgtggtggttttccatattcgaatttattttgttgttgtgatgttccagatctcaacttttaggaagaaaagattggt |
272 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43738121 |
cttcaaatacagtgaagcttgttgtggtggttttccagatacgaatttattttgttgttgtgatgttccagatctcaacttttaggaagaaaagattggt |
43738220 |
T |
|
| Q |
273 |
gaagatgaatgatttgtttgaagaacacataaatgaatgaatgaagatgaatagttgggtttcacaattagatttctttctctttattttgattcaagaa |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
43738221 |
gaagatgaatgatttgtttgaagaacacataaatgaatgaatgaagatgaatagctgggtttcac-attagattcatttctctttattttgattcaagaa |
43738319 |
T |
|
| Q |
373 |
tatttttgaagggaaaaataaattgagatgaaattttcatagggtgacaataataaactaagttgttaaggttagagatgatgtgnnnnnnntagagtgt |
472 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||| |||||||| |
|
|
| T |
43738320 |
tatttttgaagggaaaaataaattgagatgaaattttcatagggtgacgataataaactaagttgttaaggttaaagattatgtgaaaaaaatagagtgt |
43738419 |
T |
|
| Q |
473 |
ggatagactatagtaacaatggtggtactactcaatctaatggttnnnnnnngactttcccatggtaaaaaagaagtatcatttcccagattaaatgaca |
572 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||| ||||||| || |
|
|
| T |
43738420 |
ggatagactatagtaataatggtggtactactcaatctaatggttaagaaaagactttcccatggtggaaaagaagtatcatttctcaggttaaatggca |
43738519 |
T |
|
| Q |
573 |
cc |
574 |
Q |
| |
|
|| |
|
|
| T |
43738520 |
cc |
43738521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 224 - 517
Target Start/End: Original strand, 47523880 - 47524186
Alignment:
| Q |
224 |
ttgttgttgtgatgttccagatctcaacttttaggaagaaaagattggtgaagatgaatgatttgtttgaagaacacataa----atgaatgaatgaaga |
319 |
Q |
| |
|
|||||||||||||||| ||||||| || |||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||| ||||||| | |
|
|
| T |
47523880 |
ttgttgttgtgatgtttcagatctaaaattttaggaagaaaaaattggtgaagatgaatgatttgtttgaataacacataaatgtatgaacgaatgaaaa |
47523979 |
T |
|
| Q |
320 |
tgaatagttgggtttcacaattaga----tttc------tttctctttattttgattcaagaatatttttgaagggaaaaataaatt--gagatgaaatt |
407 |
Q |
| |
|
||||||||||||||||| ||||||| |||| ||||||| ||||||| |||||||||||||||| ||||||||||||||| |||||| |||| |
|
|
| T |
47523980 |
tgaatagttgggtttca-aattagattcttttctctccatttctctctattttgtttcaagaatatttttgtagggaaaaataaattgagagatgtaatt |
47524078 |
T |
|
| Q |
408 |
ttcatagggtgacaataataaactaagttgttaaggttagagatgatgtgnnnnnnntagagtgtggatagactatagtaacaatggtggtactactcaa |
507 |
Q |
| |
|
|||| | ||||| |||||||| | ||||||||||||| ||||| ||||| || ||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
47524079 |
ttcaca-ggtgaagataataaaatgagttgttaaggttggagataatgtg-aaaaaatatagtgtggataggctataataacaatggtggtactactcaa |
47524176 |
T |
|
| Q |
508 |
tctaatggtt |
517 |
Q |
| |
|
||||| |||| |
|
|
| T |
47524177 |
tctaagggtt |
47524186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 415 - 568
Target Start/End: Complemental strand, 55159339 - 55159186
Alignment:
| Q |
415 |
ggtgacaataataaactaagttgttaaggttagagatgatgtgnnnnnnntagagtgtggatagactatagtaacaatggtggtactactcaatctaatg |
514 |
Q |
| |
|
|||||| |||||||||| | ||||||||||||||||||||||| || ||||||||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
55159339 |
ggtgacgataataaacttaattgttaaggttagagatgatgtgaagaaattatagtgtggatagactataataataatggtggtactactcaatctaatg |
55159240 |
T |
|
| Q |
515 |
gttnnnnnnngactttcccatggtaaaaaagaagtatcatttcccagattaaat |
568 |
Q |
| |
|
|| ||||||||||||||| |||||||| || ||||||| ||||||| |
|
|
| T |
55159239 |
gtaaaaaaaagactttcccatggtaggaaagaagtctcctttcccaaattaaat |
55159186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 436 - 516
Target Start/End: Original strand, 28684142 - 28684222
Alignment:
| Q |
436 |
tgttaaggttagagatgatgtgnnnnnnntagagtgtggatagactatagtaacaatggtggtactactcaatctaatggt |
516 |
Q |
| |
|
|||||||||||||||||||||| || ||||||| ||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
28684142 |
tgttaaggttagagatgatgtgaagaaaatatagtgtggctagactataataacaatggtggtactactcaatctaatggt |
28684222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 469 - 574
Target Start/End: Original strand, 47199338 - 47199443
Alignment:
| Q |
469 |
gtgtggatagactatagtaacaatggtggtactactcaatctaatggttnnnnnnngactttcccatggtaaaaaagaagtatcatttcccagattaaat |
568 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||| |||||||| || ||||||| ||||||| |
|
|
| T |
47199338 |
gtgtggatagactataataacaatggtggtactactcaatctaatggtaaaaaaatgactttcctatggtgggaaagaagtctcttttcccaaattaaat |
47199437 |
T |
|
| Q |
569 |
gacacc |
574 |
Q |
| |
|
| |||| |
|
|
| T |
47199438 |
gccacc |
47199443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 526 - 574
Target Start/End: Complemental strand, 39522423 - 39522375
Alignment:
| Q |
526 |
actttcccatggtaaaaaagaagtatcatttcccagattaaatgacacc |
574 |
Q |
| |
|
||||||||||||| |||||||| |||| ||||||| ||||||||||||| |
|
|
| T |
39522423 |
actttcccatggtgaaaaagaactatcctttcccaaattaaatgacacc |
39522375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 43737948 - 43737982
Alignment:
| Q |
1 |
cattgagatttttcaaatacataaatgtagatcat |
35 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |
|
|
| T |
43737948 |
cattgagatttttcaaatacataaatgtcgatcat |
43737982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 309
Target Start/End: Complemental strand, 55159436 - 55159399
Alignment:
| Q |
272 |
tgaagatgaatgatttgtttgaagaacacataaatgaa |
309 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
55159436 |
tgaagatgaattatttgtttgaagaacccataaatgaa |
55159399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1037 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: scaffold1037
Description:
Target: scaffold1037; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 148 - 568
Target Start/End: Original strand, 2525 - 2941
Alignment:
| Q |
148 |
ttccttgcttttcaacgnnnnnnnncttcaaatacagtgaagcttgttgtggtggttttccatattcgaatttattttgttgttgtgatgttccagatct |
247 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||||||||||||||||||| || || ||||||| |||||||||||||||||||||||||| |
|
|
| T |
2525 |
ttccttgcttttcaacgttttttttcttcaaataaagtgaagcttgttgtggtggtttttcagatccgaatttgttttgttgttgtgatgttccagatct |
2624 |
T |
|
| Q |
248 |
caacttttaggaagaaaagattggtgaagatgaatgatttgtttgaagaacacataaatgaatgaatgaagatgaatagttgggtttcacaattagattt |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
2625 |
caacttttaggaagaaaagattggtgaagatgaatgatttgtttgaagaacacataaatgaacgaa----gatgaatagttgggtttcacaattagattc |
2720 |
T |
|
| Q |
348 |
ctttctctttattttgattcaagaatatttttgaagggaaaaataaattgagatgaaattttcatagggtgacaataataaactaagttgttaaggttag |
447 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
2721 |
ctttctctttattttgattcaagaatatttttgaaggaaaaaataaattgagattaaattttcatagggtgacgataataaactaagttgttaaggttag |
2820 |
T |
|
| Q |
448 |
agatgatgtgnnnnnnntagagtgtggatagactatagtaacaatggtggtactactcaatctaatggttnnnnnnngactttcccatggtaaaaaagaa |
547 |
Q |
| |
|
|||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||| ||||||| |
|
|
| T |
2821 |
agatgatgcgaaaaaaatagagtgtggatagactataataacaatggtggtactactcaatctaatggataaaaaaagactttcccatggtagaaaagaa |
2920 |
T |
|
| Q |
548 |
gtatcatttcccagattaaat |
568 |
Q |
| |
|
||||| ||||||||||||||| |
|
|
| T |
2921 |
gtatcctttcccagattaaat |
2941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1037; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 2380 - 2413
Alignment:
| Q |
2 |
attgagatttttcaaatacataaatgtagatcat |
35 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
2380 |
attgagatttttcaaatacataaatgtagatcat |
2413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1031 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: scaffold1031
Description:
Target: scaffold1031; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 148 - 568
Target Start/End: Original strand, 2644 - 3060
Alignment:
| Q |
148 |
ttccttgcttttcaacgnnnnnnnncttcaaatacagtgaagcttgttgtggtggttttccatattcgaatttattttgttgttgtgatgttccagatct |
247 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||||||||||||||||||| || || ||||||| |||||||||||||||||||||||||| |
|
|
| T |
2644 |
ttccttgcttttcaacgttttttttcttcaaataaagtgaagcttgttgtggtggtttttcagatccgaatttgttttgttgttgtgatgttccagatct |
2743 |
T |
|
| Q |
248 |
caacttttaggaagaaaagattggtgaagatgaatgatttgtttgaagaacacataaatgaatgaatgaagatgaatagttgggtttcacaattagattt |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
2744 |
caacttttaggaagaaaagattggtgaagatgaatgatttgtttgaagaacacataaatgaacgaa----gatgaatagttgggtttcacaattagattc |
2839 |
T |
|
| Q |
348 |
ctttctctttattttgattcaagaatatttttgaagggaaaaataaattgagatgaaattttcatagggtgacaataataaactaagttgttaaggttag |
447 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
2840 |
ctttctctttattttgattcaagaatatttttgaaggaaaaaataaattgagattaaattttcatagggtgacgataataaactaagttgttaaggttag |
2939 |
T |
|
| Q |
448 |
agatgatgtgnnnnnnntagagtgtggatagactatagtaacaatggtggtactactcaatctaatggttnnnnnnngactttcccatggtaaaaaagaa |
547 |
Q |
| |
|
|||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||| ||||||| |
|
|
| T |
2940 |
agatgatgcgaaaaaaatagagtgtggatagactataataacaatggtggtactactcaatctaatggataaaaaaagactttcccatggtagaaaagaa |
3039 |
T |
|
| Q |
548 |
gtatcatttcccagattaaat |
568 |
Q |
| |
|
||||| ||||||||||||||| |
|
|
| T |
3040 |
gtatcctttcccagattaaat |
3060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1031; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 2498 - 2532
Alignment:
| Q |
1 |
cattgagatttttcaaatacataaatgtagatcat |
35 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
2498 |
cattgagatttttcaaatacataaatgtagatcat |
2532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 131; Significance: 1e-67; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 177 - 517
Target Start/End: Complemental strand, 17494807 - 17494469
Alignment:
| Q |
177 |
aaatacagtgaagcttgttgtggtggttttccatattcgaatttatt-ttgttgttgtgatgttccagatctcaacttttaggaagaaaagattggtgaa |
275 |
Q |
| |
|
||||||| |||||||||||||| |||||||||| || | ||| |||| ||||| | ||||| | ||| ||||||||| |||||||||||||||||| ||| |
|
|
| T |
17494807 |
aaatacaatgaagcttgttgtgatggttttccaaatccaaatctattcttgttttggtgat-taccaaatctcaactgttaggaagaaaagattggcgaa |
17494709 |
T |
|
| Q |
276 |
gatgaatgatttgtttgaagaacacataaatgaatgaatgaagatgaatagttgggtttcacaattagatttctttctctttattttgattcaagaatat |
375 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||| ||||| |||| |
|
|
| T |
17494708 |
gatgaatgatttgtttaaagaacacataaatgaatgaatgaagatgaata---aggtttca-gattagattcatttctctttattttgtttcaaaaatag |
17494613 |
T |
|
| Q |
376 |
ttttgaagggaaaaataaatt--gagatgaaattttcatagggtgacaataataaactaagttgttaaggttagagatgatgtg-nnnnnnntagagtgt |
472 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||| |||| || || |||||||||| ||||| |||||| ||| |||||||| || ||||| |
|
|
| T |
17494612 |
ttttgaagggaaaaataaattgagagatgtaatttccata-tgtcacgataataaactgagttgataaggtcagatatgatgtgaaaaattatatagtgt |
17494514 |
T |
|
| Q |
473 |
ggatagactatagtaacaatggtggtactactcaatctaatggtt |
517 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
17494513 |
ggatagactataataacaatggtggtactattcaatctaatggtt |
17494469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 415 - 516
Target Start/End: Original strand, 37874850 - 37874951
Alignment:
| Q |
415 |
ggtgacaataataaactaagttgttaaggttagagatgatgtgnnnnnnntagagtgtggatagactatagtaacaatggtggtactactcaatctaatg |
514 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||||||||||| || ||||||||||||||||| |||||||| |||||||| ||||||||||| |
|
|
| T |
37874850 |
ggtgacgataataaacttagttgttaaggttagagatgatgtgaagaaaatatagtgtggatagactataataacaatgatggtactaatcaatctaatg |
37874949 |
T |
|
| Q |
515 |
gt |
516 |
Q |
| |
|
|| |
|
|
| T |
37874950 |
gt |
37874951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 468 - 578
Target Start/End: Original strand, 48870695 - 48870805
Alignment:
| Q |
468 |
agtgtggatagactatagtaacaatggtggtactactcaatctaatggttnnnnnnngactttcccatggtaaaaaagaagtatcatttcccagattaaa |
567 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||| |||| |||||||||| ||||| |
|
|
| T |
48870695 |
agtgtggatagactataataacaatggtggtactactcaatctaatggtaaaaaaaagactttcccatggtgggaaaaaagtctcatttcccaagttaaa |
48870794 |
T |
|
| Q |
568 |
tgacacccaaa |
578 |
Q |
| |
|
| |||||||| |
|
|
| T |
48870795 |
ttccacccaaa |
48870805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 468 - 516
Target Start/End: Original strand, 35616716 - 35616764
Alignment:
| Q |
468 |
agtgtggatagactatagtaacaatggtggtactactcaatctaatggt |
516 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
35616716 |
agtgtggatagactataataacaatggtggtactactcaatctaatggt |
35616764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 272 - 317
Target Start/End: Original strand, 37874742 - 37874787
Alignment:
| Q |
272 |
tgaagatgaatgatttgtttgaagaacacataaatgaatgaatgaa |
317 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
37874742 |
tgaagatgaattatttgtttgaagaacacataaatgaatgaatgaa |
37874787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 526 - 574
Target Start/End: Complemental strand, 38930360 - 38930312
Alignment:
| Q |
526 |
actttcccatggtaaaaaagaagtatcatttcccagattaaatgacacc |
574 |
Q |
| |
|
||||||||||||| |||||||| | || ||||||| ||||||||||||| |
|
|
| T |
38930360 |
actttcccatggtgaaaaagaactttcctttcccaaattaaatgacacc |
38930312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 128; Significance: 7e-66; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 224 - 517
Target Start/End: Complemental strand, 36476141 - 36475836
Alignment:
| Q |
224 |
ttgttgttgtgatgttccagatctcaacttttaggaagaaaagattggtgaagatgaatgatttgtttgaagaacacataa----atgaatgaatgaaga |
319 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
36476141 |
ttgttgttgtgatgttccagatctaaaattttaggaagaaaaaattggtgaagatgaatgatttgtttgaagaacacataaatgtatgaacgaatgaaga |
36476042 |
T |
|
| Q |
320 |
tgaatagttgggtttcacaattaga----tttc------tttctctttattttgattcaagaatatttttgaagggaaaaataaatt--gagatgaaatt |
407 |
Q |
| |
|
||||||||||||||||| ||||||| |||| ||||||| ||||||| |||||||||||||||| ||| ||||||||||| |||||| |||| |
|
|
| T |
36476041 |
tgaatagttgggtttca-aattagattgttttctctccatttctctctattttgtttcaagaatatttttgtaggcaaaaataaattgagagatgtaatt |
36475943 |
T |
|
| Q |
408 |
ttcatagggtgacaataataaactaagttgttaaggttagagatgatgtgnnnnnnntagagtgtggatagactatagtaacaatggtggtactactcaa |
507 |
Q |
| |
|
|||| | ||||| |||||||| | ||||||||||||| ||||||||||| || ||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
36475942 |
ttcaca-ggtgaagataataaaatgagttgttaaggttggagatgatgtg--aaaaatatagtgtggatagactataataacaatggtggtactactcaa |
36475846 |
T |
|
| Q |
508 |
tctaatggtt |
517 |
Q |
| |
|
||||| |||| |
|
|
| T |
36475845 |
tctaagggtt |
36475836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 415 - 511
Target Start/End: Original strand, 5277284 - 5277380
Alignment:
| Q |
415 |
ggtgacaataataaactaagttgttaaggttagagatgatgtgnnnnnnntagagtgtggatagactatagtaacaatggtggtactactcaatcta |
511 |
Q |
| |
|
|||||| |||||||||| ||||||||||||| ||||||||||| || ||||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
5277284 |
ggtgacgataataaacttagttgttaaggttggagatgatgtgaagaaaatatagtgtggatagactataataacaatggtggtactacttaatcta |
5277380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 272 - 317
Target Start/End: Original strand, 5277175 - 5277220
Alignment:
| Q |
272 |
tgaagatgaatgatttgtttgaagaacacataaatgaatgaatgaa |
317 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
5277175 |
tgaagatgaattatttgtttgaagaacacataaatgaatgaatgaa |
5277220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 5e-36; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 177 - 317
Target Start/End: Complemental strand, 4554152 - 4554011
Alignment:
| Q |
177 |
aaatacagtgaagcttgttgtggtggttttccatattcgaatttatt-ttgttgttgtgatgttccagatctcaacttttaggaagaaaagattggtgaa |
275 |
Q |
| |
|
||||||| ||||| |||||||||| ||||| || || ||||||| || |||||||| ||||||||||||||| | ||| ||||||||||||||||||||| |
|
|
| T |
4554152 |
aaatacaatgaagtttgttgtggtagtttttcaaatccgaatttgttcttgttgttttgatgttccagatctgaccttgtaggaagaaaagattggtgaa |
4554053 |
T |
|
| Q |
276 |
gatgaatgatttgtttgaagaacacataaatgaatgaatgaa |
317 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||| |||| |
|
|
| T |
4554052 |
gatgaatgatttatttgaagaacacaaaaatgaatgattgaa |
4554011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 436 - 574
Target Start/End: Complemental strand, 13655071 - 13654933
Alignment:
| Q |
436 |
tgttaaggttagagatgatgtgnnnnnnntagagtgtggatagactatagtaacaatggtggtactactcaatctaatggttnnnnnnngactttcccat |
535 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| || |
|
|
| T |
13655071 |
tgttaaggttagagatgatgtgaagaaaatatagtgtggatagactataataacaatggtggtactactcaatctaatggtaaaaaaaagactttcctat |
13654972 |
T |
|
| Q |
536 |
ggtaaaaaagaagtatcatttcccagattaaatgacacc |
574 |
Q |
| |
|
||| |||||||| || ||||||| |||||||| |||| |
|
|
| T |
13654971 |
ggtgggaaagaagtctcctttcccaaattaaatgtcacc |
13654933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 469 - 517
Target Start/End: Complemental strand, 4553834 - 4553786
Alignment:
| Q |
469 |
gtgtggatagactatagtaacaatggtggtactactcaatctaatggtt |
517 |
Q |
| |
|
|||| ||||||||||| |||||||| |||||||||| |||| ||||||| |
|
|
| T |
4553834 |
gtgtagatagactataataacaatgatggtactacttaatcaaatggtt |
4553786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 7e-26; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 415 - 516
Target Start/End: Original strand, 9574460 - 9574561
Alignment:
| Q |
415 |
ggtgacaataataaactaagttgttaaggttagagatgatgtgnnnnnnntagagtgtggatagactatagtaacaatggtggtactactcaatctaatg |
514 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
9574460 |
ggtgacgataataaacttagttgttaaggttagagatgatgtgaagaaaatatagtgtggatagactataataacaatggtggtactactcaatttaatg |
9574559 |
T |
|
| Q |
515 |
gt |
516 |
Q |
| |
|
|| |
|
|
| T |
9574560 |
gt |
9574561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 272 - 333
Target Start/End: Original strand, 9574355 - 9574416
Alignment:
| Q |
272 |
tgaagatgaatgatttgtttgaagaacacataaatgaatgaatgaagatgaatagttgggtt |
333 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
9574355 |
tgaagatgaattatttgtttgaagaacacataaatgaatgaatgaagatgaataattgggtt |
9574416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 526 - 574
Target Start/End: Original strand, 7532440 - 7532488
Alignment:
| Q |
526 |
actttcccatggtaaaaaagaagtatcatttcccagattaaatgacacc |
574 |
Q |
| |
|
||||||||||||| |||||||||| || ||||||| |||||||| |||| |
|
|
| T |
7532440 |
actttcccatggtgaaaaagaagtctcctttcccaaattaaatgccacc |
7532488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 468 - 516
Target Start/End: Original strand, 17227890 - 17227938
Alignment:
| Q |
468 |
agtgtggatagactatagtaacaatggtggtactactcaatctaatggt |
516 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
17227890 |
agtgtggatagactataataacaatggtggtactactcaatctaatggt |
17227938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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