View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0543_low_9 (Length: 557)
Name: NF0543_low_9
Description: NF0543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0543_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 144; Significance: 2e-75; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 170 - 349
Target Start/End: Original strand, 41134103 - 41134280
Alignment:
| Q |
170 |
tttcttgatggggtggcaacgtgagagagaagagaagaagcatagatgataggactcattctatgacttgnnnnnnnnngttgtttcccacgttgttgtt |
269 |
Q |
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| T |
41134103 |
tttcttgatggggtggcaacgtgagagagaagagaagaagcatagatgataggactcattctatgacttgttttttt--gttgtttcccacgttgttgtt |
41134200 |
T |
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| Q |
270 |
gttgtcgttgcgcgcgtgacatgttgaataactaagctagctttatggttcacacacgtcattctctttggtctataaca |
349 |
Q |
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| T |
41134201 |
gttgttgttgcgcgcgtgacatgttgaataactaagctagctttatggttcacacacgtcattctctttggtctataaca |
41134280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 410 - 549
Target Start/End: Original strand, 41134341 - 41134480
Alignment:
| Q |
410 |
ggacaagatttctcatatcttattacgtttgatttgtgttataaaaggttgaaatgttgagttgtgacttgaattgaatgttgtcatctcacaaaaatac |
509 |
Q |
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| T |
41134341 |
ggacaagatttctcatatcttattacgtttgatttgtgttataaaaggttgaaatgttgagttgtgacttgaattgaatgttgtcatctcacaaaaatac |
41134440 |
T |
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| Q |
510 |
acttatcaacatcatgatcctggaccttgcaacagctagg |
549 |
Q |
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| T |
41134441 |
acttatcaacatcatgatcctggaccttgcaacagctagg |
41134480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 6 - 129
Target Start/End: Original strand, 41133959 - 41134082
Alignment:
| Q |
6 |
aagaacgaagacacgagtgaactaaaatagtaataaatgagaacataccgagatacataggaatcagaaataagctgtttaagactcaaccgtttatggt |
105 |
Q |
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| T |
41133959 |
aagaacgaagacacgagtgaactaaagtagtaataaatgagaacataccgagatacatagaaatcagaaataagttgtttaagactcaaccgtttatggt |
41134058 |
T |
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| Q |
106 |
aagtacattgaatgaaggaacatg |
129 |
Q |
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| T |
41134059 |
aagtacattgaatgaaggaacatg |
41134082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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