View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0544_high_1 (Length: 649)
Name: NF0544_high_1
Description: NF0544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0544_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 118 - 552
Target Start/End: Original strand, 33119830 - 33120264
Alignment:
| Q |
118 |
aatcttgtatcgaatgttggttttgcagctaaaaccaggggcatgcttaatccaagatgacgcgtctaaggagcgttgcgaatcacagcatagggattgg |
217 |
Q |
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| T |
33119830 |
aatcttgtatcaaatgttgggtttgcagctaaaaccgggggcatacttaatccaagacgacgcatctaaggagcgctgcgcatcacaacacagagattgg |
33119929 |
T |
|
| Q |
218 |
tacacacaaggatgtccaagcaaaataggatggttggcaatagttggtttagcagtctacataatattcttttcaccaggaatgggaactgttccatggg |
317 |
Q |
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| T |
33119930 |
tacacacaaggatgtccaagcaatataggatggttggcgatagttggtttagcagtctacataatattcttttcaccaggaatgggaacggttccatggg |
33120029 |
T |
|
| Q |
318 |
ttatcaactctgaaatataccctttaaggtatagaggaatatgtggaggaatagcatcaacaacagtgtgggtctctaacctcattgtttctcaatcctt |
417 |
Q |
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| T |
33120030 |
ttatcaactctgaaatacaccctttaaggtatagaggaatatgtggaggaatagcatcaacaacagtgtgggtctctaacctcattgtttctcaatcctt |
33120129 |
T |
|
| Q |
418 |
tttatctgtcatagaacttcttgggactgcatggacattcctggcttttggagtaattagttgtatgaccattgtttttgttattatttttgtaccagaa |
517 |
Q |
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| T |
33120130 |
tttatctgtcatagaacttcttgggactgcatggacattcctggcttttggagtaattagttgtatggccattgtttttgttattatttttgtcccagaa |
33120229 |
T |
|
| Q |
518 |
actaagggagttcctatggaggagatggaaaaatt |
552 |
Q |
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| T |
33120230 |
actaagggagttccaatggaggagatggaaaaatt |
33120264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 215 - 424
Target Start/End: Original strand, 33116715 - 33116924
Alignment:
| Q |
215 |
tggtacacacaaggatgtccaagcaaaataggatggttggcaatagttggtttagcagtctacataatattcttttcaccaggaatgggaactgttccat |
314 |
Q |
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| T |
33116715 |
tggtatacacaaggatgtcctagcaaattgggttggcttgcactgattggattggctctctatatactgttcttttcacctggaatggggactgttccat |
33116814 |
T |
|
| Q |
315 |
gggttatcaactctgaaatataccctttaaggtatagaggaatatgtggaggaatagcatcaacaacagtgtgggtctctaacctcattgtttctcaatc |
414 |
Q |
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|||| || |||||||| || ||||||||||||||||||||| | ||||||||||| || ||||||| || ||| |||| ||||| |||||||||||||| |
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| T |
33116815 |
gggtcataaactctgagatttaccctttaaggtatagaggagtctgtggaggaatggcttcaacaagtgtttggatctcaaaccttattgtttctcaatc |
33116914 |
T |
|
| Q |
415 |
ctttttatct |
424 |
Q |
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|||||||||| |
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| T |
33116915 |
ctttttatct |
33116924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 2e-38; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 273 - 414
Target Start/End: Complemental strand, 21492025 - 21491884
Alignment:
| Q |
273 |
tctacataatattcttttcaccaggaatgggaactgttccatgggttatcaactctgaaatataccctttaaggtatagaggaatatgtggaggaatagc |
372 |
Q |
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||||||| |||||||| || || ||||||||||| |||||||||||| | ||||||||||| || || || ||||||||||||||||||||||||||||| |
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| T |
21492025 |
tctacatcatattcttctcgcctggaatgggaacagttccatgggttgttaactctgaaatctatccattgaggtatagaggaatatgtggaggaatagc |
21491926 |
T |
|
| Q |
373 |
atcaacaacagtgtgggtctctaacctcattgtttctcaatc |
414 |
Q |
| |
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| T |
21491925 |
atcaacaacagtgtgggtttccaaccttgttgtttctcaatc |
21491884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 282 - 379
Target Start/End: Complemental strand, 21558576 - 21558479
Alignment:
| Q |
282 |
tattcttttcaccaggaatgggaactgttccatgggttatcaactctgaaatataccctttaaggtatagaggaatatgtggaggaatagcatcaaca |
379 |
Q |
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| T |
21558576 |
tattcttctcaccaggaatgggaacagttccatgggttgtaaactctgaaatatatccattaagatacagaggaatatgtggaggaatcgcgtcaaca |
21558479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 486 - 534
Target Start/End: Complemental strand, 21558372 - 21558324
Alignment:
| Q |
486 |
ccattgtttttgttattatttttgtaccagaaactaagggagttcctat |
534 |
Q |
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||||||||||||| ||| ||||||| |||||||| |||||| ||||||| |
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| T |
21558372 |
ccattgtttttgtcattgtttttgtgccagaaacaaagggacttcctat |
21558324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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