View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0544_high_10 (Length: 403)

Name: NF0544_high_10
Description: NF0544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0544_high_10
NF0544_high_10
[»] chr5 (1 HSPs)
chr5 (1-375)||(24135083-24135456)
[»] chr6 (2 HSPs)
chr6 (8-91)||(10740746-10740829)
chr6 (6-127)||(3950617-3950737)
[»] chr7 (2 HSPs)
chr7 (4-91)||(46964270-46964357)
chr7 (8-62)||(10414217-10414271)
[»] chr2 (2 HSPs)
chr2 (4-91)||(8985746-8985833)
chr2 (1-103)||(2483657-2483757)
[»] chr4 (4 HSPs)
chr4 (4-91)||(16869682-16869768)
chr4 (12-90)||(37928128-37928206)
chr4 (3-116)||(24131935-24132048)
chr4 (4-90)||(54146781-54146866)


Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 24135083 - 24135456
Alignment:
Q  1 atttgtattgttaacatggtatcaagagcgtggtttgatccgccttgaaagacttgtcgcttacgccgttgaattcccaaaagtttgggaaagtatttgg 100  Q
    |||||||||||||| |||||||||||||||||||||||||||| |||||||| || |||||| ||||||||||||||||||||||||| |||||||||||    
T  24135083 atttgtattgttaagatggtatcaagagcgtggtttgatccgctttgaaagatttatcgctttcgccgttgaattcccaaaagtttggaaaagtatttgg 24135182  T
Q  101 tttagtctttgatgatcggttcagtttatacactgcaatattcggtttgttctcttcatcggtttgtttcttattgtatttagtaatttgcaatattggt 200  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  24135183 tttagtctttgatgatcggttcagattatacactgcaatattcggtttgttctcttcatcggtttgtttcttattgtatttactaatttgcaatattggt 24135282  T
Q  201 gctttgatgattggtttaaaacnnnnnnnnnnncttttgttgaatcccgatctaaggtatctcttttggaattgaaattgtgcaatttgaagaatgaagc 300  Q
    ||||||||||||||||||||||           |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  24135283 gctttgatgattggtttaaaac-aaaaaaaaaacttttgttgaatcccgatctaaggtatctcttttggaattgaaattttgcaatttggagaatgaagc 24135381  T
Q  301 cggctccatgtttatttgattctcattggttggtcagtcaatgttgcacaattttattttgttttggattagagt 375  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  24135382 cggctccatgtttatttgattctcattggttggtcagtcaatgttgcacaattttgtttttttttggattagagt 24135456  T

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Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 10740746 - 10740829
Alignment:
Q  8 ttgttaacatggtatcaagagcgtggtttgatccgccttgaaagacttgtcgcttacgccgttgaattcccaaaagtttgggaa 91  Q
    |||||||||||||||||||||| ||||||||||| ||||||| ||  |||||||| ||| ||||| ||||||||||||||||||    
T  10740746 ttgttaacatggtatcaagagcatggtttgatcctccttgaatgatctgtcgcttccgcagttgagttcccaaaagtttgggaa 10740829  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 6 - 127
Target Start/End: Original strand, 3950617 - 3950737
Alignment:
Q  6 tattgttaacatggtatcaagagcgtggtttgatccgccttgaaagacttgtcgcttacgccgttgaattcccaaaagtttgggaaagtatttggtttag 105  Q
    |||||||||||||||||| | ||| |||||||||||||||||||  ||||||| |||  ||  | ||| || |||||||||| |||  |||||||||| |    
T  3950617 tattgttaacatggtatcgaaagcatggtttgatccgccttgaaccacttgtcacttctgctatcgaa-tctcaaaagtttgagaatatatttggtttgg 3950715  T
Q  106 tctttgatgatcggttcagttt 127  Q
    | ||||||||||| ||||||||    
T  3950716 tatttgatgatcgattcagttt 3950737  T

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Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 4 - 91
Target Start/End: Complemental strand, 46964357 - 46964270
Alignment:
Q  4 tgtattgttaacatggtatcaagagcgtggtttgatccgccttgaaagacttgtcgcttacgccgttgaattcccaaaagtttgggaa 91  Q
    ||||||||||||||||||||||||||||||||||| || ||||||   | | ||||||| ||| ||||| ||||||||||||||||||    
T  46964357 tgtattgttaacatggtatcaagagcgtggtttgaccctccttgatttagtcgtcgcttccgctgttgagttcccaaaagtttgggaa 46964270  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 10414217 - 10414271
Alignment:
Q  8 ttgttaacatggtatcaagagcgtggtttgatccgccttgaaagacttgtcgctt 62  Q
    |||||||||||||||||||||| ||||||||||||  ||||| | ||||||||||    
T  10414217 ttgttaacatggtatcaagagcatggtttgatccgttttgaacggcttgtcgctt 10414271  T

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Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 8985746 - 8985833
Alignment:
Q  4 tgtattgttaacatggtatcaagagcgtggtttgatccgccttgaaagacttgtcgcttacgccgttgaattcccaaaagtttgggaa 91  Q
    ||||||||||||||||||||||||||||||||||| || ||||||   | | ||||||| ||| ||||| ||||||||||||||||||    
T  8985746 tgtattgttaacatggtatcaagagcgtggtttgaccctccttgatttagtcgtcgcttccgctgttgagttcccaaaagtttgggaa 8985833  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 2483657 - 2483757
Alignment:
Q  1 atttgtattgttaacatggtatcaagagcgtggtttgatccgccttgaaagacttgtcgcttacgccgttgaattcccaaaagtttgggaaagtatttgg 100  Q
    ||||||||||||||||||||||||||||| ||||| |||||| ||||||  |||  ||||||  ||||| ||||| ||||||||||||||  || |||||    
T  2483657 atttgtattgttaacatggtatcaagagcatggttcgatccg-cttgaaccactaatcgcttctgccgtcgaatt-ccaaaagtttgggattgtttttgg 2483754  T
Q  101 ttt 103  Q
    |||    
T  2483755 ttt 2483757  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 16869682 - 16869768
Alignment:
Q  4 tgtattgttaacatggtatcaagagcgtggtttgatccgccttgaaagacttgtcgcttacgccgttgaattcccaaaagtttgggaa 91  Q
    ||||||||||||||||||||||||||||||||||| || ||||||   | | ||||||| ||| ||||| || |||||||||||||||    
T  16869682 tgtattgttaacatggtatcaagagcgtggtttgaccctccttgatttagtcgtcgcttccgctgttgagtt-ccaaaagtttgggaa 16869768  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 90
Target Start/End: Original strand, 37928128 - 37928206
Alignment:
Q  12 taacatggtatcaagagcgtggtttgatccgccttgaaagacttgtcgcttacgccgttgaattcccaaaagtttggga 90  Q
    |||||||||||| ||||| || |||||||||||| |||  | ||||||||| ||||||||| ||||||||| |||||||    
T  37928128 taacatggtatcgagagcttgttttgatccgcctagaatcatttgtcgctttcgccgttgagttcccaaaaatttggga 37928206  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 116
Target Start/End: Original strand, 24131935 - 24132048
Alignment:
Q  3 ttgtattgttaacatggtatcaagagcgtggtttgatccgccttgaaagacttgtcgcttacgccgttgaattcccaaaagtttgggaaagtatttggtt 102  Q
    ||||||||||||||||||||||||||| || |||||||| |||||||    ||||||||| | |  ||   ||||||||||| |||| | | ||||||||    
T  24131935 ttgtattgttaacatggtatcaagagcttgttttgatccaccttgaatcgtttgtcgcttccactattaccttcccaaaagtatggggatgcatttggtt 24132034  T
Q  103 tagtctttgatgat 116  Q
    | ||||||||||||    
T  24132035 tggtctttgatgat 24132048  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 54146781 - 54146866
Alignment:
Q  4 tgtattgttaacatggtatcaagagcgtggtttgatccgccttgaaagacttgtcgcttacgccgttgaattcccaaaagtttggga 90  Q
    ||||||||||||||| |||| ||| | || ||||||||||||||||   |||||||||| ||| || ||| ||||||||||||||||    
T  54146781 tgtattgttaacatgatatctagaacttgttttgatccgccttgaaccgcttgtcgcttccgctgtcgaa-tcccaaaagtttggga 54146866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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