View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0544_high_2 (Length: 585)
Name: NF0544_high_2
Description: NF0544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0544_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 11 - 137
Target Start/End: Original strand, 14203287 - 14203416
Alignment:
| Q |
11 |
acaaaatagagaacgtgtcatttctgtctctgctactttctaatgatgcttaaaggctaaatccacttgccca---attattattatatcacgatcgttc |
107 |
Q |
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| T |
14203287 |
acaaaatggataatgtgtcatttctgtctctactactttcttatgatgcttaaaggctaaagccacttgcccaattattattattatatcacgatcgttc |
14203386 |
T |
|
| Q |
108 |
gaaagtggtgtgattttacggttctaataa |
137 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
14203387 |
gaaagtggtgtgattttacggttctaataa |
14203416 |
T |
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