View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0544_high_9 (Length: 411)
Name: NF0544_high_9
Description: NF0544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0544_high_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 30 - 351
Target Start/End: Complemental strand, 4094942 - 4094614
Alignment:
| Q |
30 |
aagatttgagttttggaacaagattttcgaagaaaaaagtagggtgtgagtgtgaacttgggagggtgtagaagaaaatacgttctaccggatgaaatct |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4094942 |
aagatttgagttttggaacaagattttcgaagaaaaaagtagggtgtgagtgtgaacttgggagggtgtagaagaaaatacgttctaccggatgaaatct |
4094843 |
T |
|
| Q |
130 |
tagccaaatatagtcaaaaaatgtgagagggagagatagttgggttgaagaagaactaggagaaactttgcattgttcatggattttgatgtgtttgttt |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4094842 |
tagccaaatatagtcaaaaaatgtgagagggagagatagttgggttgaagaagaactaggagaaactttgcattgttcatggattttgatgtgtttgttt |
4094743 |
T |
|
| Q |
230 |
agagaagccatttggaaaatgatgatgatgcttggtctaagaaaaa------tttgcttgtgttata----tcctagttctgttttattatcatcttttg |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| ||||| | ||||||||||||| | |||||||||||||||| |||||||| |
|
|
| T |
4094742 |
agagaagccatttggaaaatgatgatgatgattggtctaataaaaatgtgcttgtgcttgtgttatatacttactagttctgttttatt---atcttttg |
4094646 |
T |
|
| Q |
320 |
aacgttgtggaaatataatatcaccctcgttc |
351 |
Q |
| |
|
|||||||| |||||||||||| |||||||||| |
|
|
| T |
4094645 |
aacgttgttgaaatataatataaccctcgttc |
4094614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 30 - 139
Target Start/End: Complemental strand, 4121967 - 4121858
Alignment:
| Q |
30 |
aagatttgagttttggaacaagattttcgaagaaaaaagtagggtgtgagtgtgaacttgggagggtgtagaagaaaatacgttctaccggatgaaatct |
129 |
Q |
| |
|
|||||||||||||||||||||| ||||| | || |||| ||||||||| |||||| ||||||||||||||||||| |||||||| || |||||||| || |
|
|
| T |
4121967 |
aagatttgagttttggaacaaggttttcaacaaagaaagaagggtgtgattgtgaatttgggagggtgtagaagaagatacgttcaactggatgaaacct |
4121868 |
T |
|
| Q |
130 |
tagccaaata |
139 |
Q |
| |
|
|||||||||| |
|
|
| T |
4121867 |
tagccaaata |
4121858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 33 - 289
Target Start/End: Complemental strand, 4102487 - 4102246
Alignment:
| Q |
33 |
atttgagttttggaacaagattttcgaagaaaaaagtagggtgtgagtgtgaacttgggagggtgtagaagaaaatacgttctaccggatgaaatcttag |
132 |
Q |
| |
|
||||||||||||||||||| ||||| || || ||| ||||||||| |||||| ||||||||||||||||| | ||| |||| | || ||||| ||||| |
|
|
| T |
4102487 |
atttgagttttggaacaaggttttcaaaaaagtaagaagggtgtgattgtgaatttgggagggtgtagaagtagatatgttcacctgggtgaaaccttag |
4102388 |
T |
|
| Q |
133 |
ccaaatatagtcaaaaaatgtgagagggagagatagttgggttgaagaagaactaggagaaactttgcattgttcatggattttgatgtgtttgtttaga |
232 |
Q |
| |
|
||||| ||||||| || ||||| | |||||||| |||| || | ||| ||||||||||||| || ||||||||||||| |||||| || |
|
|
| T |
4102387 |
ccaaaacaagtcaaagaaagtgagtgagagagataattggttt---gcagacttaggagaaactttatat------tggattttgatgtagttgtttgga |
4102297 |
T |
|
| Q |
233 |
gaagccatttggaaaatgatgatgatgcttggtctaagaaaaatttgcttgtgttat |
289 |
Q |
| |
|
|||| ||||||||| ||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
4102296 |
gaagtcatttggaa------gatgatgtttggtctaagaaacatttgcttgtgttat |
4102246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 30 - 137
Target Start/End: Complemental strand, 4195790 - 4195683
Alignment:
| Q |
30 |
aagatttgagttttggaacaagattttcgaagaaaaaagtagggtgtgagtgtgaacttgggagggtgtagaagaaaatacgttctaccggatgaaatct |
129 |
Q |
| |
|
|||||||||| |||||||||| |||| ||| || |||| || |||||| |||||| ||||||||||||||||||||| ||||||||||||||| || || |
|
|
| T |
4195790 |
aagatttgagaattggaacaagtttttggaaaaagaaagaagtgtgtgaatgtgaatttgggagggtgtagaagaaaacacgttctaccggatggaacct |
4195691 |
T |
|
| Q |
130 |
tagccaaa |
137 |
Q |
| |
|
||||||| |
|
|
| T |
4195690 |
aagccaaa |
4195683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 30 - 137
Target Start/End: Complemental strand, 4233539 - 4233432
Alignment:
| Q |
30 |
aagatttgagttttggaacaagattttcgaagaaaaaagtagggtgtgagtgtgaacttgggagggtgtagaagaaaatacgttctaccggatgaaatct |
129 |
Q |
| |
|
|||||||||| |||||||||| || | |||||| |||| ||||||||| |||||| ||||||||| ||||||||||| ||||||||| ||||| || || |
|
|
| T |
4233539 |
aagatttgagaattggaacaagcttcttgaagaagaaagaagggtgtgaatgtgaatttgggagggcgtagaagaaaacacgttctactggatggaacct |
4233440 |
T |
|
| Q |
130 |
tagccaaa |
137 |
Q |
| |
|
|||||||| |
|
|
| T |
4233439 |
tagccaaa |
4233432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 30 - 114
Target Start/End: Complemental strand, 4192041 - 4191957
Alignment:
| Q |
30 |
aagatttgagttttggaacaagattttcgaagaaaaaagtagggtgtgagtgtgaacttgggagggtgtagaagaaaatacgttc |
114 |
Q |
| |
|
|||||||||| ||| |||||| |||| |||||| |||| ||||||||| |||||||||||||||||||||||||||| |||||| |
|
|
| T |
4192041 |
aagatttgagaattgtaacaagcttttggaagaagaaagaagggtgtgattgtgaacttgggagggtgtagaagaaaacacgttc |
4191957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 32 - 137
Target Start/End: Complemental strand, 4250565 - 4250460
Alignment:
| Q |
32 |
gatttgagttttggaacaagattttcgaagaaaaaagtagggtgtgagtgtgaacttgggagggtgtagaagaaaatacgttctaccggatgaaatctta |
131 |
Q |
| |
|
|||||||| |||||||||| ||| ||||| |||| ||||||||| |||||| ||||||||||||||||||||| |||||||| ||||| || |||| |
|
|
| T |
4250565 |
gatttgagatttggaacaatcgtttgaaagaagaaagaagggtgtgattgtgaatttgggagggtgtagaagaaaactcgttctactggatggaacctta |
4250466 |
T |
|
| Q |
132 |
gccaaa |
137 |
Q |
| |
|
|||||| |
|
|
| T |
4250465 |
gccaaa |
4250460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 367 - 411
Target Start/End: Complemental strand, 4094629 - 4094585
Alignment:
| Q |
367 |
aatatgaccctcgttgtacacgcgtatgattattttgttttgttt |
411 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
4094629 |
aatataaccctcgttctacacgcgtatgattattttattttgttt |
4094585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 116
Target Start/End: Complemental strand, 4188889 - 4188815
Alignment:
| Q |
42 |
ttggaacaagattttcgaagaaaaaagtagggtgtgagtgtgaacttgggagggtgtagaagaaaatacgttcta |
116 |
Q |
| |
|
||||||| || |||| ||||| |||| ||||||||| |||||| ||||||||||||| ||||| || ||||||| |
|
|
| T |
4188889 |
ttggaactagtttttgaaagaagaaagaagggtgtgattgtgaatttgggagggtgtaaaagaagattcgttcta |
4188815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1600 times since January 2019
Visitors: 3672