View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0544_low_14 (Length: 381)
Name: NF0544_low_14
Description: NF0544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0544_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 23 - 352
Target Start/End: Original strand, 27560085 - 27560414
Alignment:
| Q |
23 |
caaaacaaaggaaaagaaaaacattgcaatcaaattcatttcagtccgagacatgctctaagacttagaaggtaaaatataagtgacactcaattaaatt |
122 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
27560085 |
caaaacaaaggaaaagaaaaacattgcaatcaaattcgtttcagtccgagacatgctctaagatttagaaggtaaaatataagtgacactcaattaaatt |
27560184 |
T |
|
| Q |
123 |
taatctcaaatgaggaaaatgtatttgttgtacaaaagaggcgttgaagaactaaatacatacagataaagaaaaacaccaaggtagacttaccaatgct |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27560185 |
taatctcaaatgaggaaaatgtatttgttgtacaaaagaggcgttgaagaactaaatacatacagataaagaaaaacaccaaggtagacttaccaatgct |
27560284 |
T |
|
| Q |
223 |
tttgaagactttattttcaaaacctgttcagcacatttgattgtaaggctcttgagttcgcttgtctgcttcaaaacaaaggaatcaataaaccttaatg |
322 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27560285 |
tttgaagactttatttccaaaacctgttcagcacatttgattgtaaggctcttgagttcgcttgtctgcttcaaaacaaaggaatcaataaaccttaatg |
27560384 |
T |
|
| Q |
323 |
cttaaaaagtatgtatagtattaattcaag |
352 |
Q |
| |
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|||||||||||||||| ||||||||||||| |
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| T |
27560385 |
cttaaaaagtatgtatggtattaattcaag |
27560414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 210 - 334
Target Start/End: Original strand, 36667764 - 36667888
Alignment:
| Q |
210 |
acttaccaatgcttttgaagactttattttcaaaacctgttcagcacatttgattgtaaggctcttgagttcgcttgtctgcttcaaaacaaaggaatca |
309 |
Q |
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|||||||| ||||||||| |||||||||| | || |||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36667764 |
acttaccattgcttttgacgactttatttccgaatcctgctcagcacatttgtttgcaaggctcttgagttcgcttgtctgcttcaaaacaaaggaatca |
36667863 |
T |
|
| Q |
310 |
ataaaccttaatgcttaaaaagtat |
334 |
Q |
| |
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||||||||||||||||||| ||||| |
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| T |
36667864 |
ataaaccttaatgcttaaatagtat |
36667888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 26 - 105
Target Start/End: Original strand, 36667649 - 36667728
Alignment:
| Q |
26 |
aacaaaggaaaagaaaaacattgcaatcaaat-tcatttcagtccgagacatgctctaagacttagaaggtaaaatataag |
105 |
Q |
| |
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|||||||||||||||||||| ||||||||||| | |||| |||| |||||||||||||| | ||||||||||||||||||| |
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| T |
36667649 |
aacaaaggaaaagaaaaacaatgcaatcaaatctgattt-agtcagagacatgctctaaaatttagaaggtaaaatataag |
36667728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 106; Significance: 6e-53; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 184 - 352
Target Start/End: Complemental strand, 24203628 - 24203459
Alignment:
| Q |
184 |
acagataaagaaaaacaccaaggta-gacttaccaatgcttttgaagactttattttcaaaacctgttcagcacatttgattgtaaggctcttgagttcg |
282 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||||| |||||||| ||| ||| ||||||||||||||||||||| ||| ||||||||| |||||| |
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| T |
24203628 |
acagataaagaaaaacacaaaggtaagacttaccaatgtttttgaagtcttcattcccaaaacctgttcagcacatttatttgcaaggctcttcagttcg |
24203529 |
T |
|
| Q |
283 |
cttgtctgcttcaaaacaaaggaatcaataaaccttaatgcttaaaaagtatgtatagtattaattcaag |
352 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
24203528 |
cttgtccgcttcaaaacaaaggaaccaataaaccttaatgcttaaaaagtatgtatggtataaattcaag |
24203459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 336
Target Start/End: Original strand, 30870622 - 30870681
Alignment:
| Q |
275 |
tgagttcgcttgtctgcttcaaaacaaaggaatcaataaaccttaatgcttaaaaagtatgt |
336 |
Q |
| |
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|||||| | |||||||||||||||| |||| ||||||||| |||||||| |||||||||||| |
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|
| T |
30870622 |
tgagtttgattgtctgcttcaaaac-aagggatcaataaatcttaatgc-taaaaagtatgt |
30870681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 201 - 352
Target Start/End: Original strand, 29409684 - 29409835
Alignment:
| Q |
201 |
ccaaggtagacttaccaatgcttttgaagactttattttcaaaacctgttcagcacatttgattgtaaggctcttgagttcgcttgtctgcttcaaaaca |
300 |
Q |
| |
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|||| ||||||| |||||||||||||||||||| |||| |||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||| |
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| T |
29409684 |
ccaaagtagactcaccaatgcttttgaagacttcatttccaaaacctgttcagcacatttgtttgcaaagctcttgagttcgcttgtctgcttcaaaaca |
29409783 |
T |
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| Q |
301 |
aaggaatcaataaaccttaatgcttaaaaagtatgtatagtattaattcaag |
352 |
Q |
| |
|
||||| || |||||||||||||||||||||||||| ||| || |||||| |
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| T |
29409784 |
aaggacataacgaaccttaatgcttaaaaagtatgtatggtactagttcaag |
29409835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 23 - 143
Target Start/End: Original strand, 29409486 - 29409614
Alignment:
| Q |
23 |
caaaacaaaggaaaagaaaaacattgcaatcaaat------tcatttcagtccgagacatgctctaagacttagaaggta---aaatataagtgacactc |
113 |
Q |
| |
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||||||||||||||||||||||||||||||||| | | |||| |||| ||||||||||||||| |||||||||| ||||| ||||||||||| |
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| T |
29409486 |
caaaacaaaggaaaagaaaaacattgcaatcaattcaaatctgattt-agtcacagacatgctctaagatttagaaggtactaaaatacaagtgacactc |
29409584 |
T |
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| Q |
114 |
aattaaatttaatctcaaatgaggaaaatg |
143 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
29409585 |
aattaaatttaatctcaaatgaggaaaatg |
29409614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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