View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0544_low_15 (Length: 379)
Name: NF0544_low_15
Description: NF0544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0544_low_15 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 30 - 379
Target Start/End: Original strand, 31869957 - 31870302
Alignment:
| Q |
30 |
gatgcatgtttaaagtttcaacatcaagcaaa-ctatacaaagccaatataaactaaaccgtgcacaattttgttttgttgttaagttacttttcagcac |
128 |
Q |
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| T |
31869957 |
gatgcatgtttaaagtttcaacatcaagcaaaactatacaaagccaatataaactaaaccgtgcacaatttt-----gttgttaagttacttttcaacac |
31870051 |
T |
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| Q |
129 |
aaatcaatttacttcaaactccttttaactaaaatcaaaattaactaaaacaaaaaccaagattaagcagggtcacctttgaatcctctttaaggtttgt |
228 |
Q |
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| T |
31870052 |
aaatcaatttacttcaaactccttttaactaaaatcaaaattaactaaaacaaaaaccaagattaagcagggtcacctttgaatcctctttaaggtttgt |
31870151 |
T |
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| Q |
229 |
ggattaatctcagcctgtgtaggaggacccatcctcttcttcataatctcattaccccatttcaacctatcaacagtaacatccccacaccacaaaatcc |
328 |
Q |
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| T |
31870152 |
ggattaatctcagcctgtgtaggaggacccatcttcttcttcataatctcattaccccatttcaacctatcaacagtaacatccccacaccacaaaatcc |
31870251 |
T |
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| Q |
329 |
ctttaaccaattgaccagaaccggccgcgatcagcttcgccgcggttccac |
379 |
Q |
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| T |
31870252 |
ctttaaccaattgaccagaaccggccgcgatcagcttcgccgcggttccac |
31870302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 257 - 329
Target Start/End: Complemental strand, 8851693 - 8851621
Alignment:
| Q |
257 |
ccatcctcttcttcataatctcattaccccatttcaacctatcaacagtaacatccccacaccacaaaatccc |
329 |
Q |
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| T |
8851693 |
ccatccttttcttcataacctgattcccccattgcaacctatccatagtaacatcaccacaccacaaaatccc |
8851621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 261 - 326
Target Start/End: Original strand, 27878304 - 27878369
Alignment:
| Q |
261 |
cctcttcttcataatctcattaccccatttcaacctatcaacagtaacatccccacaccacaaaat |
326 |
Q |
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|||||||||||| | |||| |||||||||||| ||||||||||||||||| || ||||||||||| |
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| T |
27878304 |
cctcttcttcatgaaatcatcaccccatttcaatctatcaacagtaacatcaccgcaccacaaaat |
27878369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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