View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0544_low_23 (Length: 280)
Name: NF0544_low_23
Description: NF0544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0544_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 6854320 - 6854131
Alignment:
| Q |
1 |
attctagttcctcaggcacactactgagcattagaataaactaatccttaggaaacaatcaaagatatttcaagattagaaactattcttattagataag |
100 |
Q |
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| T |
6854320 |
attctagttcctcaggcacactactgggcattagaataaactaatccttaggaaacaatcaaagatatttcaagattagaaactattcttattagataag |
6854221 |
T |
|
| Q |
101 |
ctatgataacgtcaagatattctaatatactttcttatactattcaacaattatgtctatcacctttatgcatttttatttggtattgat |
190 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
6854220 |
ctatgataacgtcaagatattctaatatactttcttataccattcaacaattatttctatcacctttatgcatttttatttggtattgat |
6854131 |
T |
|
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