View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0544_low_25 (Length: 251)

Name: NF0544_low_25
Description: NF0544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0544_low_25
NF0544_low_25
[»] chr8 (12 HSPs)
chr8 (20-239)||(22898676-22898895)
chr8 (67-236)||(24872473-24872642)
chr8 (126-234)||(25477650-25477758)
chr8 (67-161)||(23260245-23260339)
chr8 (114-235)||(25807225-25807346)
chr8 (46-142)||(25455051-25455147)
chr8 (46-142)||(25717262-25717358)
chr8 (46-94)||(25324775-25324823)
chr8 (46-94)||(25343097-25343145)
chr8 (46-94)||(25606754-25606802)
chr8 (46-94)||(25653421-25653469)
chr8 (46-94)||(25697477-25697525)
[»] scaffold0070 (2 HSPs)
scaffold0070 (126-234)||(48523-48631)
scaffold0070 (46-139)||(34979-35072)
[»] scaffold0830 (1 HSPs)
scaffold0830 (46-181)||(2428-2563)
[»] scaffold1415 (1 HSPs)
scaffold1415 (46-142)||(1105-1201)
[»] chr4 (1 HSPs)
chr4 (46-94)||(10325961-10326009)


Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 20 - 239
Target Start/End: Original strand, 22898676 - 22898895
Alignment:
Q  20 acatcatcataatcacactccgtatgcattttcaggttcaataccaaaggagattggctatcttgataaacttgaaattcttatattagcagaaaatagc 119  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22898676 acatcatcataatcacactccttatgcattttcaggttcgataccaaaggagattggctatcttgataaacttgaaattcttatattagcagaaaatagc 22898775  T
Q  120 ttcagtggatctattccttccaacctcatgaacatgtcatcattgaaacaattggagtttgagcaaaattacctctcaggaattattccatcaaaaacag 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22898776 ttcagtggatctattccttccaacctcatgaacatgtcatcattgaaacaattggagtttgagcaaaattacctctcaggaattattccatcaaaaacag 22898875  T
Q  220 gatataaccttcctagccta 239  Q
    ||||||||||||||| ||||    
T  22898876 gatataaccttcctaaccta 22898895  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 67 - 236
Target Start/End: Original strand, 24872473 - 24872642
Alignment:
Q  67 aggagattggctatcttgataaacttgaaattcttatattagcagaaaatagcttcagtggatctattccttccaacctcatgaacatgtcatcattgaa 166  Q
    ||||||||||||||||||||||||||||    ||  |||| ||| | |||||||| | ||||||||| ||||||||  || | |||||||||||| |||     
T  24872473 aggagattggctatcttgataaacttgagcagctactattggcaaacaatagctttactggatctataccttccaaaatcttcaacatgtcatcactgat 24872572  T
Q  167 acaattggagtttgagcaaaattacctctcaggaattattccatcaaaaacaggatataaccttcctagc 236  Q
    |   ||| |  |||| |||||| ||||||| || || ||||||||||| || ||||||||||||||||||    
T  24872573 aggcttgtatcttgaacaaaatcacctctccgggataattccatcaaatacgggatataaccttcctagc 24872642  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 234
Target Start/End: Complemental strand, 25477758 - 25477650
Alignment:
Q  126 ggatctattccttccaacctcatgaacatgtcatcattgaaacaattggagtttgagcaaaattacctctcaggaattattccatcaaaaacaggatata 225  Q
    ||||| ||||||||||| ||| | ||||| |||||| ||| | | ||| |  |||| ||||||||||||||||| || ||||||||||||||||| ||||    
T  25477758 ggatcaattccttccaaactcctcaacatatcatcactgacatacttgcatcttgaacaaaattacctctcaggcataattccatcaaaaacaggttata 25477659  T
Q  226 accttccta 234  Q
     ||||||||    
T  25477658 gccttccta 25477650  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 67 - 161
Target Start/End: Complemental strand, 23260339 - 23260245
Alignment:
Q  67 aggagattggctatcttgataaacttgaaattcttatattagcagaaaatagcttcagtggatctattccttccaacctcatgaacatgtcatca 161  Q
    |||||||||| |||||||||||||||||| |||| || || | | | |||||||| |||||||| |||||||| || ||| | ||||||||||||    
T  23260339 aggagattggttatcttgataaacttgaatttctaatcttggaaaacaatagcttgagtggatccattccttctaaactcctcaacatgtcatca 23260245  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 235
Target Start/End: Complemental strand, 25807346 - 25807225
Alignment:
Q  114 aatagcttcagtggatctattccttccaacctcatgaacatgtcatcattgaaacaattggagtttgagcaaaattacctctcaggaattattccatcaa 213  Q
    |||||||| ||||||||||||||||||||  || | ||| |||||||| | | ||| |||||| ||||  | |||  ||||||||| |  ||||||||||    
T  25807346 aatagcttaagtggatctattccttccaaaatcttcaacttgtcatcactcacacatttggaggttgaaaataatagcctctcaggcacaattccatcaa 25807247  T
Q  214 aaacaggatataaccttcctag 235  Q
    | || ||||||| |||||||||    
T  25807246 atacgggatatagccttcctag 25807225  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 142
Target Start/End: Complemental strand, 25455147 - 25455051
Alignment:
Q  46 cattttcaggttcaataccaaaggagattggctatcttgataaacttgaaattcttatattagcagaaaatagcttcagtggatctattccttccaa 142  Q
    ||||||||||| | || ||  ||||||||||||||||||||||||||||  | ||  | || | ||| ||||| || ||||||||||||||||||||    
T  25455147 cattttcaggtacgattcccgaggagattggctatcttgataaacttgagctgctagttttgggagacaataggttaagtggatctattccttccaa 25455051  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 142
Target Start/End: Complemental strand, 25717358 - 25717262
Alignment:
Q  46 cattttcaggttcaataccaaaggagattggctatcttgataaacttgaaattcttatattagcagaa-aatagcttcagtggatctattccttccaa 142  Q
    ||||||||||| | || ||  ||||||||||||||||||||||||||| |  | ||||| | | | || |||||||| ||||||||||||||||||||    
T  25717358 cattttcaggtacgattcccgaggagattggctatcttgataaacttg-aggtgttatacttgtataacaatagcttaagtggatctattccttccaa 25717262  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 25324823 - 25324775
Alignment:
Q  46 cattttcaggttcaataccaaaggagattggctatcttgataaacttga 94  Q
    ||||||||||| | || ||  ||||||||||||||||||||||||||||    
T  25324823 cattttcaggtacgattcccgaggagattggctatcttgataaacttga 25324775  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 25343145 - 25343097
Alignment:
Q  46 cattttcaggttcaataccaaaggagattggctatcttgataaacttga 94  Q
    ||||||||||| | || ||  ||||||||||||||||||||||||||||    
T  25343145 cattttcaggtacgattcccgaggagattggctatcttgataaacttga 25343097  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 25606802 - 25606754
Alignment:
Q  46 cattttcaggttcaataccaaaggagattggctatcttgataaacttga 94  Q
    ||||||||||| | || || ||||||||||| |||||||||||||||||    
T  25606802 cattttcaggtacgattcccaaggagattggttatcttgataaacttga 25606754  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 25653469 - 25653421
Alignment:
Q  46 cattttcaggttcaataccaaaggagattggctatcttgataaacttga 94  Q
    ||||||||||| | |||||  |||||||||||||||||||| |||||||    
T  25653469 cattttcaggtacgatacccgaggagattggctatcttgatcaacttga 25653421  T

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Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 25697525 - 25697477
Alignment:
Q  46 cattttcaggttcaataccaaaggagattggctatcttgataaacttga 94  Q
    ||||||||||| | || || ||||||||||| |||||||||||||||||    
T  25697525 cattttcaggtacgattcccaaggagattggttatcttgataaacttga 25697477  T

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Target: scaffold0070 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 126 - 234
Target Start/End: Original strand, 48523 - 48631
Alignment:
Q  126 ggatctattccttccaacctcatgaacatgtcatcattgaaacaattggagtttgagcaaaattacctctcaggaattattccatcaaaaacaggatata 225  Q
    ||||| ||||| ||||| ||| | ||||| |||||| ||| | | |||||  |||  ||||||||||||||||| || ||||||||||||||||| ||||    
T  48523 ggatcaattccatccaaactcctcaacatatcatcactgacatacttggatcttgtacaaaattacctctcaggcataattccatcaaaaacaggttata 48622  T
Q  226 accttccta 234  Q
     ||||||||    
T  48623 gccttccta 48631  T

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Target: scaffold0070; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 139
Target Start/End: Original strand, 34979 - 35072
Alignment:
Q  46 cattttcaggttcaataccaaaggagattggctatcttgataaacttgaaattcttatattagcagaaaatagcttcagtggatctattccttc 139  Q
    ||||||||||| | || ||  ||||||||||||||||||||||||||||  | ||  ||||  |  | |||||||| |||||||||||||||||    
T  34979 cattttcaggtacgattcccgaggagattggctatcttgataaacttgaggtgctattattgtctaacaatagcttaagtggatctattccttc 35072  T

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Target: scaffold0830 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0830
Description:

Target: scaffold0830; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 181
Target Start/End: Original strand, 2428 - 2563
Alignment:
Q  46 cattttcaggttcaataccaaaggagattggctatcttgataaacttgaaattcttatattagcagaaaatagcttcagtggatctattccttccaacct 145  Q
    ||||||||||||| |||||  ||||||||| ||||||||||||||||||  |||| |||||  | |  |||| ||| |||||| |||||| ||||||  |    
T  2428 cattttcaggttctatacctgaggagattgtctatcttgataaacttgagcttctaatattgtctgttaataacttaagtggaactattcattccaaaat 2527  T
Q  146 catgaacatgtcatcattgaaacaattggagtttga 181  Q
    | | ||||||||||| || | ||| |||||| ||||    
T  2528 cttcaacatgtcatcgttaacacatttggagcttga 2563  T

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Target: scaffold1415 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1415
Description:

Target: scaffold1415; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 142
Target Start/End: Complemental strand, 1201 - 1105
Alignment:
Q  46 cattttcaggttcaataccaaaggagattggctatcttgataaacttgaaattcttatattagcagaa-aatagcttcagtggatctattccttccaa 142  Q
    ||||||||||| | || ||  ||||||||||||||||||||||||||| |  | ||||| | | | || |||||||| ||||||||||||||||||||    
T  1201 cattttcaggtacgattcccgaggagattggctatcttgataaacttg-agctgttatacttgtataacaatagcttaagtggatctattccttccaa 1105  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 10326009 - 10325961
Alignment:
Q  46 cattttcaggttcaataccaaaggagattggctatcttgataaacttga 94  Q
    ||||| ||||||| ||||   ||||||||||||||||||||||||||||    
T  10326009 catttccaggttcgatacttgaggagattggctatcttgataaacttga 10325961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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