View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0544_low_26 (Length: 251)

Name: NF0544_low_26
Description: NF0544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0544_low_26
NF0544_low_26
[»] chr2 (1 HSPs)
chr2 (1-236)||(5190583-5190818)


Alignment Details
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 5190818 - 5190583
Alignment:
Q  1 caaaatttcgccataatta-agtataataacatttcaacctaattgcatacagtcaaaactacgtgcagttatgcagtcaaaacaattgcacgcagtttc 99  Q
    |||||||||||||||| || | || |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||    
T  5190818 caaaatttcgccataaatataata-aataacatttcaacataattgcatacagtcaaaagtacgtgcagttatgcagtcaaaacaactacacgcagtttc 5190720  T
Q  100 aactgcaacatgcaaatttgattgcatgcaatctcgctttgaaatgaaagtacaatgtttcaataatttagcttttatgcaaaattgaaaagctttttat 199  Q
    ||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  5190719 aactgcaacatgcaaatttaattgaatgcaatttcgctttgaaatgaaagtacaatgtttcaataatttagcttttatgcaaaattgaaaagcttttaat 5190620  T
Q  200 tttgcnnnnnnntatttttatgtctctaaattctaat 236  Q
    |||||       |||||||||||||||||||||||||    
T  5190619 tttgcaaaaaattatttttatgtctctaaattctaat 5190583  T

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