View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0544_low_28 (Length: 232)
Name: NF0544_low_28
Description: NF0544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0544_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 11 - 212
Target Start/End: Complemental strand, 2837981 - 2837780
Alignment:
| Q |
11 |
aggtctccacaacatcatcctaattcgtaactgcaattatggtcgcatttgtcctcaatttcctgcaatatcaaggatcgcgattcagctgtaagtgtaa |
110 |
Q |
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| T |
2837981 |
aggtctccacaacatcatcctaattcgtaactgcaattatggtcgcatttgtcctcaatttcctgcaatatcaaggatcgcgattcagccgtaagtgtaa |
2837882 |
T |
|
| Q |
111 |
ccagccaccgcaatttaaaaccatatttattttcaagacatagatttcctccacctattaggagtcctacctttgacattcaccaacctagttttcatat |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2837881 |
ccagccaccgcaatttaaaaccatatttattttcaagacatagatttcctccacctattaggagtcctacctttgacattcaccaacctagttttcatat |
2837782 |
T |
|
| Q |
211 |
ca |
212 |
Q |
| |
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|| |
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| T |
2837781 |
ca |
2837780 |
T |
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