View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0544_low_4 (Length: 573)

Name: NF0544_low_4
Description: NF0544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0544_low_4
NF0544_low_4
[»] chr2 (1 HSPs)
chr2 (91-433)||(44734184-44734521)
[»] chr4 (1 HSPs)
chr4 (91-144)||(2259650-2259703)


Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 91 - 433
Target Start/End: Original strand, 44734184 - 44734521
Alignment:
Q  91 cacaagaggtccgcacccaaaccaagcatccacagtggaagacccgttttggctaattgatgatcaaatcaaactactaagttagttaaaacacttgaaa 190  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||    
T  44734184 cacaagaggtccgcacccaaaccaagcatccaaagtggaagacccgttttggctaattgatgatcaaatcaaacta---agttagttaaaacacttgaaa 44734280  T
Q  191 attcaactgacac--aacaaggttaatttggttctctttcttttggtttttgtttgtgttcaaggtactgttgttgtcgcgggaatgccactgctattta 288  Q
    | |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  44734281 actcaactgacacacaacaaggttaatttggttctctttcttttggtttttgtttgtgttcaaggttctgttgttgtcgcgggaatgccactgctattta 44734380  T
Q  289 aagccatcacaaacgacttaaggacccttttcacacnnnnnnnnnnnnggactaatgagtaatgaatgaccccacctagcatattctttctttctatcct 388  Q
    ||| ||||||||||||||||||||||||||||||||            ||||||||||||    ||||||||||||||||||||||||||||||||||||    
T  44734381 aagtcatcacaaacgacttaaggacccttttcacacaaaaacaaaaaaggactaatgagt----aatgaccccacctagcatattctttctttctatcct 44734476  T
Q  389 tttaacacatttacattgagagggatctattttattcctaaatgg 433  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  44734477 tttaacacatttacattgagagggatctattttattcctaaatgg 44734521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 144
Target Start/End: Complemental strand, 2259703 - 2259650
Alignment:
Q  91 cacaagaggtccgcacccaaaccaagcatccacagtggaagacccgttttggct 144  Q
    ||||||||||||| |||||| ||||||| ||| || || |||||||||||||||    
T  2259703 cacaagaggtccggacccaatccaagcaaccaaagagggagacccgttttggct 2259650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University