View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0544_low_6 (Length: 518)
Name: NF0544_low_6
Description: NF0544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0544_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 16 - 484
Target Start/End: Complemental strand, 3990365 - 3989897
Alignment:
| Q |
16 |
atcaaaaggtggtgttacctctctgaaacattctgcatgataaaagctgtctctttcatctctgtcatgaactacacttccagataacttcatatataat |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3990365 |
atcaaaaggtggtgttacctctctgaaacattctgcatgataaaagctgtctctttcatctctgtcatgaactacacttccagataacttcatatataat |
3990266 |
T |
|
| Q |
116 |
tataaacatatgaacataatcaaatagcttcaaaacacaggcatcaagaaattgtaccgtgctagagtttgattcaagattatcaactgcacccatcctt |
215 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3990265 |
tataaacatatgaacagaatcaaatagcttcaaaacacaggcatcaagaaattgtaccgtgctagagtttgattcaagattatcaactgcacccatcctt |
3990166 |
T |
|
| Q |
216 |
gtgaaaacacggtcaactaccctaagagttgagaagcgggcaggaacgtaacacccaacttgagcaatgataactatgagacacacttgttgaaggtaag |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3990165 |
gtgaaaacacggtcaactaccctaagagttgagaagcgggcaggaacgtaacacccaacttgagcaatgataactatgagacacacttgttgaaggtaag |
3990066 |
T |
|
| Q |
316 |
tactctttccgctcctggggaaaaggaatatagaaataaatcttgagactatactcttcatctaaacaactagccacacaaaaagagtaaacttcgctgt |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3990065 |
tactctttccgctcctggggaaaaggaatatagaaataaatcttgagactatactcttcatctaaacaactagccacacaaaaagagtaaacttcgctgt |
3989966 |
T |
|
| Q |
416 |
agtttgcgaataattcgcatttaaactgtaagtaacacgtactaattttaaagaatgatgacgggtttt |
484 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3989965 |
agtttgcgaataattcgcatttaaactgtaagtaacacgtactaattttaaagaatgatgacgggtttt |
3989897 |
T |
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