View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0544_low_7 (Length: 494)
Name: NF0544_low_7
Description: NF0544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0544_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 358; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Complemental strand, 8412760 - 8412329
Alignment:
| Q |
1 |
atttgtgaagacaaaagaatttctatatctgttattattattgttgcttgggcgaattttagttattactatttgtcattgatacttgtctcaccaaatt |
100 |
Q |
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| T |
8412760 |
atttgtgaagacaaaagaatttctatatctgttattattattgttgcttgggcgaattttagttatta-------tcattgatacttgtctcaccaaatt |
8412668 |
T |
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| Q |
101 |
cacaacaattttcttagttatacgaatttaatatttaaaagta----catcgataatggtaatgcttcatatatttagcaccatattaaataactaggta |
196 |
Q |
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| T |
8412667 |
cacaacaattttcttaattatacgaatttaatatttaaaagtaagtacatcgataatggtagtgcttcatatatttagcaccatattaaataactaggta |
8412568 |
T |
|
| Q |
197 |
cctccattatggaggaaagaagttgagtccttacaaatgtccccgttcacttcactttttgcggtttgtattatatatgttatttaataaatctcgcaat |
296 |
Q |
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| T |
8412567 |
cctccattatggaggaaagaagttgagtccttacaaatgtccccgttcactt-----tttgcggtttgtattatatatgttatttaataaatctcgcaat |
8412473 |
T |
|
| Q |
297 |
agcatagtcacaaactcacaataaacaaaaagtcccacatcgaaaactttcaacaatagagagtgtaagttgcctataaaagcaacgcatatatcgttgt |
396 |
Q |
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| T |
8412472 |
agcatagtcacaaactcacagtaaacaaaaagtcccacatcgaaaactttcaacaatagagagtgtaagttgcctataaaagcaacgcatatatcgttgt |
8412373 |
T |
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| Q |
397 |
ggtgtattacttctctaatgagatgataggtgcatcagaacttat |
441 |
Q |
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| T |
8412372 |
agtgtattac-tctctaatgagatgataggtgcatcagaacttat |
8412329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 8351489 - 8351253
Alignment:
| Q |
1 |
atttgtgaagacaaaagaatttctatatctgttattattattgttgcttgggcgaattttagttattactatttgtcattgatacttgtctcaccaaatt |
100 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||| ||||||||||||||||||| |
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| T |
8351489 |
atttgtgaagccaaaagaatttctatatctgttattattattgttgcttgggccaattttagatattactagttgtcattcatacttgtctcaccaaatt |
8351390 |
T |
|
| Q |
101 |
cacaacaattttcttagttatacgaatttaatatttaa----aagtacatcgataatggtaatgcttcatatatttagcaccatattaaataactaggta |
196 |
Q |
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| T |
8351389 |
cacaacaatttttttaattatacaaatttaatatttaaaaataagtacatcgataatggtagtgcttcatatatttaacactatattaaataactagata |
8351290 |
T |
|
| Q |
197 |
cctccattatggaggaaagaagttgagtccttacaaa |
233 |
Q |
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| T |
8351289 |
cctccattatggaggaaagaagttgagtccttacaaa |
8351253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 312 - 447
Target Start/End: Complemental strand, 8351179 - 8351042
Alignment:
| Q |
312 |
tcacaataaacaaaaagtcccacatcgaaaactttcaacaatagagagtgtaagttgcctataaaagcaacgcat-atatcgttgtggtgtattacttct |
410 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||| ||||||| ||||| |
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| T |
8351179 |
tcacaatagacaaaaagtcccacatcgaaaactttcaacaatagagagtgtaagttgcctataaaaacagcgcatgatatcgttgtagtgtatttcttct |
8351080 |
T |
|
| Q |
411 |
ctaatgagatgataggtgcatcag-aacttatcagcaa |
447 |
Q |
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| T |
8351079 |
ctaatgagttgataggcgaatgagaaacttatcagcaa |
8351042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 93 - 234
Target Start/End: Complemental strand, 8452004 - 8451859
Alignment:
| Q |
93 |
accaaattcacaacaattttcttagttatacgaatttaatatttaaaagta----catcgataatggtaatgcttcatatatttagcaccatattaaata |
188 |
Q |
| |
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||||| ||| |||||||||||| | |||| ||||||||||||||||||||| | || | |||| |||||||| |||||||||||||||| |||||| |
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| T |
8452004 |
accaatttcgcaacaattttctcaattatgcgaatttaatatttaaaagtaagtacctccacaatgataatgctttgtatatttagcaccatactaaata |
8451905 |
T |
|
| Q |
189 |
actaggtacctccattatggaggaaagaagttgagtccttacaaat |
234 |
Q |
| |
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|| | ||||| |||||| ||||||||||||||||| | ||||||| |
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| T |
8451904 |
acgtgataccttcattattgaggaaagaagttgagtgcgtacaaat |
8451859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 310 - 359
Target Start/End: Complemental strand, 8451785 - 8451736
Alignment:
| Q |
310 |
actcacaataaacaaaaagtcccacatcgaaaactttcaacaatagagag |
359 |
Q |
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||||||| || ||||||||||||||||| ||||||||||| ||||||||| |
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| T |
8451785 |
actcacagtagacaaaaagtcccacatcaaaaactttcaataatagagag |
8451736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 386
Target Start/End: Complemental strand, 8358903 - 8358843
Alignment:
| Q |
325 |
aaagtcccacatcgaaaactttcaacaatagagagtgtaagttgcctataaaagcaacgcat |
386 |
Q |
| |
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|||||||||||||||||| |||| |||||| | || |||||||| ||||||||||| ||||| |
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| T |
8358903 |
aaagtcccacatcgaaaa-tttctacaatataaagagtaagttggctataaaagcagcgcat |
8358843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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