View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0544_low_8 (Length: 435)

Name: NF0544_low_8
Description: NF0544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0544_low_8
NF0544_low_8
[»] chr6 (16 HSPs)
chr6 (8-380)||(33285636-33286008)
chr6 (131-372)||(33304510-33304751)
chr6 (145-379)||(33057588-33057822)
chr6 (131-373)||(33399079-33399321)
chr6 (138-373)||(33644288-33644523)
chr6 (159-373)||(33358892-33359106)
chr6 (165-373)||(31562596-31562804)
chr6 (143-367)||(33410036-33410260)
chr6 (145-360)||(9166790-9167005)
chr6 (179-358)||(33271865-33272044)
chr6 (131-373)||(33388185-33388427)
chr6 (145-366)||(33262658-33262879)
chr6 (234-366)||(28870013-28870145)
chr6 (137-201)||(28869950-28870014)
chr6 (8-53)||(9167190-9167235)
chr6 (100-132)||(9167087-9167119)
[»] chr2 (1 HSPs)
chr2 (148-366)||(17440638-17440856)
[»] scaffold1408 (2 HSPs)
scaffold1408 (157-362)||(683-888)
scaffold1408 (8-52)||(1071-1115)
[»] scaffold0428 (2 HSPs)
scaffold0428 (157-362)||(6429-6634)
scaffold0428 (8-52)||(6817-6861)
[»] chr4 (8 HSPs)
chr4 (235-365)||(31157250-31157380)
chr4 (212-362)||(31498870-31499020)
chr4 (227-365)||(31504015-31504153)
chr4 (212-365)||(31148336-31148489)
chr4 (212-365)||(31478815-31478968)
chr4 (378-429)||(56067869-56067920)
chr4 (262-314)||(31472410-31472462)
chr4 (255-312)||(31017634-31017691)
[»] chr7 (1 HSPs)
chr7 (243-357)||(6785240-6785354)


Alignment Details
Target: chr6 (Bit Score: 345; Significance: 0; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 8 - 380
Target Start/End: Complemental strand, 33286008 - 33285636
Alignment:
Q  8 ccaacaatatattcggtctaagctctcttaaatatctatatatgtggaactgtcgcaaagcgtttaccaatcaaagggatctgaagaacccggatataag 107  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  33286008 ccaacaacatattcggtctaagctctcttaaatatctatatatgtggaactgtcacaaagcgtttaccaatcaaagggatttgaagaacccggatataag 33285909  T
Q  108 tgaaagtgcatcacattctcgatcatatgtgttgtcatccttgcatagcttatattgtttgcgtgaagttaacattagcttttgccgtctaagccaagtg 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33285908 tgaaagtgcatcacattctcgatcatatgtgttgtcatccttgcatagcttatattgtttgcgtgaagttaacattagcttttgccgtctaagccaagtg 33285809  T
Q  208 tcatatgcaattgaatgtttatattggctagaaatattaaactaagggggaaacaattttgtgacactacctagcctgaggaagctgtccaaacttgtat 307  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  33285808 tcatatgcaattgaatgtttatattggctagaaatattaaacttagggggaaacaattttgtgacactacctagcctgagaaagctgtccaaacttgtat 33285709  T
Q  308 atttaaatttggagcattgcaaattgttggaatctttgcctcaacttccttttcctaccaatattgaggagga 380  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  33285708 atttaaatttggagcattgcaagttgttggaatctttgcctcaacttccttttcctaccaatattggggagga 33285636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 131 - 372
Target Start/End: Complemental strand, 33304751 - 33304510
Alignment:
Q  131 catatgtgttgtcatccttgcatagcttatattgtttgcgtgaagttaacattagcttttgccgtctaagccaagtgtcatatgcaattgaatgtttata 230  Q
    ||||| ||||| |||||||||||||||||  ||||||||| || ||| ||||||||||||||| ||||||||||||  |  |||||||||||||||||||    
T  33304751 catatttgttgccatccttgcatagcttagtttgtttgcgagacgttgacattagcttttgccatctaagccaagttcctgatgcaattgaatgtttata 33304652  T
Q  231 ttggctagaaatattaaactaagggggaaacaattttgtgacactacctagcctgaggaagctgtccaaacttgtatatttaaatttggagcattgcaaa 330  Q
     | |||||||| |||||||| || |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||      
T  33304651 ctcgctagaaagattaaacttagagggaaacaattttgtgactctacctagcctgaggaagctttccaaacttgtatatttaaatttgcagcattgcatg 33304552  T
Q  331 ttgttggaatctttgcctcaacttccttttcctaccaatatt 372  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  33304551 ttgttggaatctttgcctcaacttccttctcctaccaatatt 33304510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 145 - 379
Target Start/End: Complemental strand, 33057822 - 33057588
Alignment:
Q  145 tccttgcatagcttatattgtttgcgtgaagttaacattagcttttgccgtctaagccaagtgtcatatgcaattgaatgtttatattggctagaaatat 244  Q
    ||||||||||| |||| |||||||||| | ||| |||| |||||||||  ||||||||| ||| |  ||||||||||||||||| |||||||||||| ||    
T  33057822 tccttgcatagtttatgttgtttgcgtaaggttgacataagcttttgctatctaagccatgtgcctgatgcaattgaatgtttacattggctagaaagat 33057723  T
Q  245 taaactaagggggaaacaattttgtgacactacctagcctgaggaagctgtccaaacttgtatatttaaatttggagcattgcaaattgttggaatcttt 344  Q
    |||| | || ||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33057722 taaatttagcgggaaacgattttgtgacattacctagcctgaggaagctatccaaacttgtatatttaaatttggagcattgcaaattgttggaatcttt 33057623  T
Q  345 gcctcaacttccttttcctaccaatattgaggagg 379  Q
    |||||||||||||||||||||||||| || |||||    
T  33057622 gcctcaacttccttttcctaccaatactggggagg 33057588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 131 - 373
Target Start/End: Complemental strand, 33399321 - 33399079
Alignment:
Q  131 catatgtgttgtcatccttgcatagcttatattgtttgcgtgaagttaacattagcttttgccgtctaagccaagtgtcatatgcaattgaatgtttata 230  Q
    ||||| ||||| ||||||||||||||||| |||||||||||| |||| ||||||||||||||  ||||||||||||  |  |||||||||||  |||| |    
T  33399321 catatttgttgccatccttgcatagcttagattgtttgcgtggagttgacattagcttttgcaatctaagccaagttcctgatgcaattgaagatttaca 33399222  T
Q  231 ttggctagaaatattaaactaagggggaaacaattttgtgacactacctagcctgaggaagctgtccaaacttgtatatttaaatttggagcattgcaaa 330  Q
    ||||||||||| |||||| | |  ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| || |||||     
T  33399221 ttggctagaaagattaaatttaaagggaaacaattttgtgacactacctagcctgaggaagctttccgaacttgtatatttaaatttggaacactgcaag 33399122  T
Q  331 ttgttggaatctttgcctcaacttccttttcctaccaatattg 373  Q
    ||||||||||||||||||||||||||||  ||||||| |||||    
T  33399121 ttgttggaatctttgcctcaacttccttcccctaccactattg 33399079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 138 - 373
Target Start/End: Original strand, 33644288 - 33644523
Alignment:
Q  138 gttgtcatccttgcatagcttatattgtttgcgtgaagttaacattagcttttgccgtctaagccaagtgtcatatgcaattgaatgtttatattggcta 237  Q
    |||| |||||||||||||||||||||||||||||    || ||||||||| ||||||||||||||| ||  |  || |||||||||||||| ||| ||||    
T  33644288 gttgccatccttgcatagcttatattgtttgcgtagcattgacattagctattgccgtctaagccatgttcctgattcaattgaatgtttacattcgcta 33644387  T
Q  238 gaaatattaaactaagggggaaacaattttgtgacactacctagcctgaggaagctgtccaaacttgtatatttaaatttggagcattgcaaattgttgg 337  Q
    |||| |||||| | |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||| |||||||    
T  33644388 gaaagattaaatttagggggaaactattttgtgacactacctagcctgaggaagctttccaaacttgtatatttaaatttggaacactgcaagttgttgg 33644487  T
Q  338 aatctttgcctcaacttccttttcctaccaatattg 373  Q
    |||||||||||||||||||||  ||||||| |||||    
T  33644488 aatctttgcctcaacttccttcccctaccactattg 33644523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 159 - 373
Target Start/End: Complemental strand, 33359106 - 33358892
Alignment:
Q  159 atattgtttgcgtgaagttaacattagcttttgccgtctaagccaagtgtcatatgcaattgaatgtttatattggctagaaatattaaactaaggggga 258  Q
    ||||||||||||||  |||  | |||| ||||||| |||||| |||||  |  ||||||||||||||||| ||||||||||||||||||| | |||||||    
T  33359106 atattgtttgcgtgttgttgcctttagtttttgccatctaagtcaagttcccgatgcaattgaatgtttacattggctagaaatattaaatttaggggga 33359007  T
Q  259 aacaattttgtgacactacctagcctgaggaagctgtccaaacttgtatatttaaatttggagcattgcaaattgttggaatctttgcctcaacttcctt 358  Q
    ||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  33359006 aacgattttgtgacactacctagcctgaggaagctttctaaacttgtatatttaaatttggaacattgcaagttgttggaatctttgcctcaacttcctt 33358907  T
Q  359 ttcctaccaatattg 373  Q
    ||||||||| |||||    
T  33358906 ttcctaccactattg 33358892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 165 - 373
Target Start/End: Original strand, 31562596 - 31562804
Alignment:
Q  165 tttgcgtgaagttaacattagcttttgccgtctaagccaagtgtcatatgcaattgaatgtttatattggctagaaatattaaactaagggggaaacaat 264  Q
    |||||||  |||| ||||||||||||||||||||||||||||| |  |||||||||||||||||   | |||||||| |||||| | |||||||||| ||    
T  31562596 tttgcgtacagttgacattagcttttgccgtctaagccaagtgcctgatgcaattgaatgtttaagctcgctagaaagattaaatttagggggaaactat 31562695  T
Q  265 tttgtgacactacctagcctgaggaagctgtccaaacttgtatatttaaatttggagcattgcaaattgttggaatctttgcctcaacttccttttccta 364  Q
    |||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||    
T  31562696 tttgtgacactacctagcttgtggaagctttccaaacttgtatatttaaatttggagcattgcgagttgttggaatctttgcctcaacttccttctccta 31562795  T
Q  365 ccaatattg 373  Q
    ||| |||||    
T  31562796 ccactattg 31562804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 143 - 367
Target Start/End: Complemental strand, 33410260 - 33410036
Alignment:
Q  143 catccttgcatagcttatattgtttgcgtgaagttaacattagcttttgccgtctaagccaagtgtcatatgcaattgaatgtttatattggctagaaat 242  Q
    |||| |||||||||||||||||||||||| ||||| | ||||||||||||| ||||| ||||||  |  ||||||||||| ||||| ||| ||||||||     
T  33410260 catcattgcatagcttatattgtttgcgtcaagttgatattagcttttgccatctaaaccaagttcctgatgcaattgaaggtttacattcgctagaaag 33410161  T
Q  243 attaaactaagggggaaacaattttgtgacactacctagcctgaggaagctgtccaaacttgtatatttaaatttggagcattgcaaattgttggaatct 342  Q
    |||| | | || ||||||| |||||||||||||||||||| |||||||||| |||||||||| ||||||| ||||| |||||||||| ||||||||||||    
T  33410160 attatatttagcgggaaactattttgtgacactacctagcttgaggaagctttccaaacttgaatatttagatttgcagcattgcaagttgttggaatct 33410061  T
Q  343 ttgcctcaacttccttttcctacca 367  Q
    |||||||||||||||||||||||||    
T  33410060 ttgcctcaacttccttttcctacca 33410036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 145 - 360
Target Start/End: Complemental strand, 9167005 - 9166790
Alignment:
Q  145 tccttgcatagcttatattgtttgcgtgaagttaacattagcttttgccgtctaagccaagtgtcatatgcaattgaatgtttatattggctagaaatat 244  Q
    ||||||| ||| ||||||||||||||||||||| ||||||||| ||||| |||||||||| || |  || ||||||||||||||   |||||||||| ||    
T  9167005 tccttgcgtagtttatattgtttgcgtgaagttgacattagctattgccatctaagccaattgcctgatacaattgaatgtttacggtggctagaaagat 9166906  T
Q  245 taaactaagggggaaacaattttgtgacactacctagcctgaggaagctgtccaaacttgtatatttaaatttggagcattgcaaattgttggaatcttt 344  Q
    |||||| |||||||| | |||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||  |||||||| | |||    
T  9166905 taaacttagggggaatcgattttgcgacactacctagcttgaggaagctttccaaacttgtatatttaaatttggagcattgcaggttgttggagttttt 9166806  T
Q  345 gcctcaacttcctttt 360  Q
    ||||||||||||||||    
T  9166805 gcctcaacttcctttt 9166790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 179 - 358
Target Start/End: Complemental strand, 33272044 - 33271865
Alignment:
Q  179 acattagcttttgccgtctaagccaagtgtcatatgcaattgaatgtttatattggctagaaatattaaactaagggggaaacaattttgtgacactacc 278  Q
    ||||||||||||||| |||| |||||||  |  ||||||||||||||||| |||||||||||| |||| | | |||||||||||||||||||||||||||    
T  33272044 acattagcttttgccatctacgccaagttcctgatgcaattgaatgtttacattggctagaaagattagatttagggggaaacaattttgtgacactacc 33271945  T
Q  279 tagcctgaggaagctgtccaaacttgtatatttaaatttggagcattgcaaattgttggaatctttgcctcaacttcctt 358  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||    
T  33271944 tagcctgaggaagctttccaaacttgtatatttaaatttggaacattgcaagttgttggaatctttgcctcgacttcctt 33271865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 131 - 373
Target Start/End: Complemental strand, 33388427 - 33388185
Alignment:
Q  131 catatgtgttgtcatccttgcatagcttatattgtttgcgtgaagttaacattagcttttgccgtctaagccaagtgtcatatgcaattgaatgtttata 230  Q
    ||||| ||||| ||||| ||||||||||| ||||||||||| ||||| ||||||||||||| | |||||  |||||  |  || |||||||||||||| |    
T  33388427 catatttgttgccatccgtgcatagcttaaattgtttgcgtaaagttgacattagcttttgtcatctaaatcaagttcccgattcaattgaatgtttaca 33388328  T
Q  231 ttggctagaaatattaaactaagggggaaacaattttgtgacactacctagcctgaggaagctgtccaaacttgtatatttaaatttggagcattgcaaa 330  Q
     |  ||||||| |||||| | |||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||     
T  33388327 ctcactagaaaaattaaatttagggggaaacgattttgtgacactacctagcttgaggaagctttccaaacttgtatatttaaatttggagcattgcaag 33388228  T
Q  331 ttgttggaatctttgcctcaacttccttttcctaccaatattg 373  Q
    || ||| ||||||| ||||||||||||| || ||||| |||||    
T  33388227 ttcttgaaatcttttcctcaacttccttctcttaccactattg 33388185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 145 - 366
Target Start/End: Complemental strand, 33262879 - 33262658
Alignment:
Q  145 tccttgcatagcttatattgtttgcgtgaagttaacattagcttttgccgtctaagccaagtgtcatatgcaattgaatgtttatattggctagaaatat 244  Q
    ||||||| ||| ||| ||||||||||| | ||| |||| |||||||||  |||| |||||||| |     |||||||||| ||| |||||||||||| ||    
T  33262879 tccttgcgtagtttacattgtttgcgtaatgttgacataagcttttgctatctacgccaagtgcctggcacaattgaatgcttacattggctagaaagat 33262780  T
Q  245 taaactaagggggaaacaattttgtgacactacctagcctgaggaagctgtccaaacttgtatatttaaatttggagcattgcaaattgttggaatcttt 344  Q
    |||| | |||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  33262779 taaatttagggggaaatgattttgtgacactacctagcctgaggaagctttccaaacttgtatatttaaatttggagcattgcaggttgttggaatcttt 33262680  T
Q  345 gcctcaacttccttttcctacc 366  Q
    |||||||||||||| |||||||    
T  33262679 gcctcaacttccttctcctacc 33262658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 234 - 366
Target Start/End: Original strand, 28870013 - 28870145
Alignment:
Q  234 gctagaaatattaaactaagggggaaacaattttgtgacactacctagcctgaggaagctgtccaaacttgtatatttaaatttggagcattgcaaattg 333  Q
    |||||||| |||||||| | |||||||| ||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||    
T  28870013 gctagaaagattaaacttacggggaaactattttgtgacactgcctagcctgaggaagctttccaaacttgaatatttaaatttggagcattgcaagttg 28870112  T
Q  334 ttggaatctttgcctcaacttccttttcctacc 366  Q
    || |||||||||||||||||||||| |||||||    
T  28870113 tttgaatctttgcctcaacttccttctcctacc 28870145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 28869950 - 28870014
Alignment:
Q  137 tgttgtcatccttgcatagcttatattgtttgcgtgaagttaacattagcttttgccgtctaagc 201  Q
    ||||| |||||||| ||||||||||||||||| || | ||| || |||||||||||| |||||||    
T  28869950 tgttgccatccttgaatagcttatattgtttgtgtaacgttgacgttagcttttgccatctaagc 28870014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 9167235 - 9167190
Alignment:
Q  8 ccaacaatatattcggtctaagctctcttaaatatctatatatgtg 53  Q
    ||||||| ||||||||||| |||||||||||| ||||| |||||||    
T  9167235 ccaacaacatattcggtcttagctctcttaaagatctaaatatgtg 9167190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 132
Target Start/End: Complemental strand, 9167119 - 9167087
Alignment:
Q  100 gatataagtgaaagtgcatcacattctcgatca 132  Q
    |||||||||||||||||||||||||| ||||||    
T  9167119 gatataagtgaaagtgcatcacattcccgatca 9167087  T

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Target: chr2 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 148 - 366
Target Start/End: Original strand, 17440638 - 17440856
Alignment:
Q  148 ttgcatagcttatattgtttgcgtgaagttaacattagcttttgccgtctaagccaagtgtcatatgcaattgaatgtttatattggctagaaatattaa 247  Q
    |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |  || |||||||||||||| ||||| |||||| |||||    
T  17440638 ttgcatagcttatattgtttgcgtgaagttgacattagtttttgccgtctaagccaagtgccggatacaattgaatgtttacattgggtagaaagattaa 17440737  T
Q  248 actaagggggaaacaattttgtgacactacctagcctgaggaagctgtccaaacttgtatatttaaatttggagcattgcaaattgttggaatctttgcc 347  Q
    | | |||||||||  |||||| |||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  17440738 atttagggggaaatgattttgcgacactacctagcctgaggaagctttcgaaacttgtatatttaaatttgcagcattgcaagttgttggaatctttgcc 17440837  T
Q  348 tcaacttccttttcctacc 366  Q
    |||||||||||||||||||    
T  17440838 tcaacttccttttcctacc 17440856  T

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Target: scaffold1408 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 157 - 362
Target Start/End: Complemental strand, 888 - 683
Alignment:
Q  157 ttatattgtttgcgtgaagttaacattagcttttgccgtctaagccaagtgtcatatgcaattgaatgtttatattggctagaaatattaaactaagggg 256  Q
    ||||||||||||||| |  || ||||||||||||||| ||||||||| ||  |  ||||||||||||||||| || ||||||||| |||||| | |||||    
T  888 ttatattgtttgcgtaacattgacattagcttttgccatctaagccatgttcctgatgcaattgaatgtttacatcggctagaaagattaaatttagggg 789  T
Q  257 gaaacaattttgtgacactacctagcctgaggaagctgtccaaacttgtatatttaaatttggagcattgcaaattgttggaatctttgcctcaacttcc 356  Q
    |||| ||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  788 gaaataattttgtgacactacctagcatgaggaagctttccagacttgtatatttaaatttggagcattgcaagttgttggaatcgttgcctcaacttcc 689  T
Q  357 ttttcc 362  Q
    ||||||    
T  688 ttttcc 683  T

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Target: scaffold1408; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 1115 - 1071
Alignment:
Q  8 ccaacaatatattcggtctaagctctcttaaatatctatatatgt 52  Q
    ||||||| ||||||||||| |||||||||||||||||| ||||||    
T  1115 ccaacaacatattcggtcttagctctcttaaatatctaaatatgt 1071  T

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Target: scaffold0428 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 157 - 362
Target Start/End: Complemental strand, 6634 - 6429
Alignment:
Q  157 ttatattgtttgcgtgaagttaacattagcttttgccgtctaagccaagtgtcatatgcaattgaatgtttatattggctagaaatattaaactaagggg 256  Q
    ||||||||||||||| |  || ||||||||||||||| ||||||||| ||  |  ||||||||||||||||| || ||||||||| |||||| | |||||    
T  6634 ttatattgtttgcgtaacattgacattagcttttgccatctaagccatgttcctgatgcaattgaatgtttacatcggctagaaagattaaatttagggg 6535  T
Q  257 gaaacaattttgtgacactacctagcctgaggaagctgtccaaacttgtatatttaaatttggagcattgcaaattgttggaatctttgcctcaacttcc 356  Q
    |||| ||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  6534 gaaataattttgtgacactacctagcatgaggaagctttccagacttgtatatttaaatttggagcattgcaagttgttggaatcgttgcctcaacttcc 6435  T
Q  357 ttttcc 362  Q
    ||||||    
T  6434 ttttcc 6429  T

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Target: scaffold0428; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 6861 - 6817
Alignment:
Q  8 ccaacaatatattcggtctaagctctcttaaatatctatatatgt 52  Q
    ||||||| ||||||||||| |||||||||||||||||| ||||||    
T  6861 ccaacaacatattcggtcttagctctcttaaatatctaaatatgt 6817  T

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Target: chr4 (Bit Score: 83; Significance: 4e-39; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 235 - 365
Target Start/End: Complemental strand, 31157380 - 31157250
Alignment:
Q  235 ctagaaatattaaactaagggggaaacaattttgtgacactacctagcctgaggaagctgtccaaacttgtatatttaaatttggagcattgcaaattgt 334  Q
    ||||||| ||||||   |||||| ||||||||||||||||| |||||||||||| |||| |||||||||||||||||||| ||||||||||||||  | |    
T  31157380 ctagaaagattaaatataggggggaacaattttgtgacactgcctagcctgagggagctttccaaacttgtatatttaaacttggagcattgcaagcttt 31157281  T
Q  335 tggaatctttgcctcaacttccttttcctac 365  Q
    |||||||||||||||||||||||||||||||    
T  31157280 tggaatctttgcctcaacttccttttcctac 31157250  T

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Target: chr4; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 212 - 362
Target Start/End: Original strand, 31498870 - 31499020
Alignment:
Q  212 atgcaattgaatgtttatattggctagaaatattaaactaagggggaaacaattttgtgacactacctagcctgaggaagctgtccaaacttgtatattt 311  Q
    ||||||||| ||||||| ||||| |||||   ||||| | |||||||||||| ||||||||| |||||||||||||| | || ||||||||||||| |||    
T  31498870 atgcaattggatgtttacattggttagaagagttaaatttagggggaaacaagtttgtgacattacctagcctgagggacctttccaaacttgtatgttt 31498969  T
Q  312 aaatttggagcattgcaaattgttggaatctttgcctcaacttccttttcc 362  Q
    ||| || || |||||||||||||||||||||||||||||||||||||||||    
T  31498970 aaacttagaacattgcaaattgttggaatctttgcctcaacttccttttcc 31499020  T

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Target: chr4; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 227 - 365
Target Start/End: Original strand, 31504015 - 31504153
Alignment:
Q  227 tatattggctagaaatattaaactaagggggaaacaattttgtgacactacctagcctgaggaagctgtccaaacttgtatatttaaatttggagcattg 326  Q
    |||||||| |||||   ||||||| ||||||||| |||||||||||| |||||||||||||| |||| |||||||||||||||||||| |||||||||||    
T  31504015 tatattggttagaatatttaaacttagggggaaataattttgtgacagtacctagcctgagggagctttccaaacttgtatatttaaacttggagcattg 31504114  T
Q  327 caaattgttggaatctttgcctcaacttccttttcctac 365  Q
    |||| |||||||||||||||||   ||||||| ||||||    
T  31504115 caaactgttggaatctttgcctgttcttccttctcctac 31504153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 212 - 365
Target Start/End: Complemental strand, 31148489 - 31148336
Alignment:
Q  212 atgcaattgaatgtttatattggctagaaatattaaactaagggggaaacaattttgtgacactacctagcctgaggaagctgtccaaacttgtatattt 311  Q
    ||||||||| | |||||  ||||||||||| ||||||   |||||||||||||||||||||  |||||||||| |||||||| |||| ||||| ||||||    
T  31148489 atgcaattggacgtttacgttggctagaaagattaaatctagggggaaacaattttgtgacggtacctagccttaggaagctatccagacttgcatattt 31148390  T
Q  312 aaatttggagcattgcaaattgttggaatctttgcctcaacttccttttcctac 365  Q
    ||| ||| ||||||| || |||||| |||| |||||||||||||||||| ||||    
T  31148389 aaacttgcagcattgtaagttgttgaaatcgttgcctcaacttccttttgctac 31148336  T

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Target: chr4; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 212 - 365
Target Start/End: Original strand, 31478815 - 31478968
Alignment:
Q  212 atgcaattgaatgtttatattggctagaaatattaaactaagggggaaacaattttgtgacactacctagcctgaggaagctgtccaaacttgtatattt 311  Q
    ||||||||| |||| |||||||| |||||  |||||| | |||||||||||||||||||||| ||||||| |||||| |||| || ||||||||||||||    
T  31478815 atgcaattggatgtctatattggttagaagcattaaatttagggggaaacaattttgtgacagtacctagtctgagggagctttcaaaacttgtatattt 31478914  T
Q  312 aaatttggagcattgcaaattgttggaatctttgcctcaacttccttttcctac 365  Q
    ||  || |||||||||||  ||||| |||||||||||  |||||||| ||||||    
T  31478915 aagcttagagcattgcaagctgttgaaatctttgcctgtacttccttctcctac 31478968  T

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Target: chr4; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 378 - 429
Target Start/End: Original strand, 56067869 - 56067920
Alignment:
Q  378 ggagcagagaattactgcaagaaaggcttcttcccatagcaaacgtgggtag 429  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56067869 ggagcagagaattactgcaagaaaggcttcttcccatagcaaacgtgggtag 56067920  T

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Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 262 - 314
Target Start/End: Original strand, 31472410 - 31472462
Alignment:
Q  262 aattttgtgacactacctagcctgaggaagctgtccaaacttgtatatttaaa 314  Q
    |||||||||||| ||||||||| |||| |||| ||||||||||||||||||||    
T  31472410 aattttgtgacagtacctagcccgagggagctttccaaacttgtatatttaaa 31472462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 312
Target Start/End: Complemental strand, 31017691 - 31017634
Alignment:
Q  255 gggaaacaattttgtgacactacctagcctgaggaagctgtccaaacttgtatattta 312  Q
    |||||||||||||||||| || ||||| || ||| |||| || |||||||||||||||    
T  31017691 gggaaacaattttgtgactctgcctagtctcagggagctttctaaacttgtatattta 31017634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 243 - 357
Target Start/End: Original strand, 6785240 - 6785354
Alignment:
Q  243 attaaactaagggggaaacaattttgtgacactacctagcctgaggaagctgtccaaacttgtatatttaaatttggagcattgcaaattgttggaatct 342  Q
    |||||| | |||||||||| ||||||||||| | |||||||||| | |||| |||||||| ||||||||||| ||||| || ||||| |||||| ||| |    
T  6785240 attaaatttagggggaaaccattttgtgacattgcctagcctgaaggagctttccaaactcgtatatttaaacttggatcactgcaagttgttgaaatat 6785339  T
Q  343 ttgcctcaacttcct 357  Q
    |||||| | ||||||    
T  6785340 ttgcctgatcttcct 6785354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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