View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0544_low_9 (Length: 423)
Name: NF0544_low_9
Description: NF0544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0544_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 13 - 326
Target Start/End: Original strand, 33119951 - 33120264
Alignment:
| Q |
13 |
aatataggatggttggcaatagttggtttagcagtctacataatattcttttcaccaggaatgggaactgttccatgggttatcaactctgaaatatacc |
112 |
Q |
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| T |
33119951 |
aatataggatggttggcgatagttggtttagcagtctacataatattcttttcaccaggaatgggaacggttccatgggttatcaactctgaaatacacc |
33120050 |
T |
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| Q |
113 |
ctttaaggtatagaggaatatgtggaggaatagcatcaacaacagtgtgggtctctaacctcattgtttctcaatcctttttatctgtcatagaacttct |
212 |
Q |
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| T |
33120051 |
ctttaaggtatagaggaatatgtggaggaatagcatcaacaacagtgtgggtctctaacctcattgtttctcaatcctttttatctgtcatagaacttct |
33120150 |
T |
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| Q |
213 |
tgggactgcatggacattcctggcttttggagtaattagttgtatgaccattgtttttgttattatttttgtaccagaaactaagggagttcctatggag |
312 |
Q |
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| T |
33120151 |
tgggactgcatggacattcctggcttttggagtaattagttgtatggccattgtttttgttattatttttgtcccagaaactaagggagttccaatggag |
33120250 |
T |
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| Q |
313 |
gagatggaaaaatt |
326 |
Q |
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| T |
33120251 |
gagatggaaaaatt |
33120264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 58 - 198
Target Start/End: Original strand, 33116784 - 33116924
Alignment:
| Q |
58 |
ttcttttcaccaggaatgggaactgttccatgggttatcaactctgaaatataccctttaaggtatagaggaatatgtggaggaatagcatcaacaacag |
157 |
Q |
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| T |
33116784 |
ttcttttcacctggaatggggactgttccatgggtcataaactctgagatttaccctttaaggtatagaggagtctgtggaggaatggcttcaacaagtg |
33116883 |
T |
|
| Q |
158 |
tgtgggtctctaacctcattgtttctcaatcctttttatct |
198 |
Q |
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| T |
33116884 |
tttggatctcaaaccttattgtttctcaatcctttttatct |
33116924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 47 - 188
Target Start/End: Complemental strand, 21492025 - 21491884
Alignment:
| Q |
47 |
tctacataatattcttttcaccaggaatgggaactgttccatgggttatcaactctgaaatataccctttaaggtatagaggaatatgtggaggaatagc |
146 |
Q |
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||||||| |||||||| || || ||||||||||| |||||||||||| | ||||||||||| || || || ||||||||||||||||||||||||||||| |
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| T |
21492025 |
tctacatcatattcttctcgcctggaatgggaacagttccatgggttgttaactctgaaatctatccattgaggtatagaggaatatgtggaggaatagc |
21491926 |
T |
|
| Q |
147 |
atcaacaacagtgtgggtctctaacctcattgtttctcaatc |
188 |
Q |
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| T |
21491925 |
atcaacaacagtgtgggtttccaaccttgttgtttctcaatc |
21491884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 56 - 153
Target Start/End: Complemental strand, 21558576 - 21558479
Alignment:
| Q |
56 |
tattcttttcaccaggaatgggaactgttccatgggttatcaactctgaaatataccctttaaggtatagaggaatatgtggaggaatagcatcaaca |
153 |
Q |
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||||||| ||||||||||||||||| |||||||||||| | |||||||||||||| || ||||| || |||||||||||||||||||| || |||||| |
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| T |
21558576 |
tattcttctcaccaggaatgggaacagttccatgggttgtaaactctgaaatatatccattaagatacagaggaatatgtggaggaatcgcgtcaaca |
21558479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 260 - 308
Target Start/End: Complemental strand, 21558372 - 21558324
Alignment:
| Q |
260 |
ccattgtttttgttattatttttgtaccagaaactaagggagttcctat |
308 |
Q |
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| T |
21558372 |
ccattgtttttgtcattgtttttgtgccagaaacaaagggacttcctat |
21558324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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