View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0545_high_11 (Length: 412)
Name: NF0545_high_11
Description: NF0545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0545_high_11 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 5 - 412
Target Start/End: Original strand, 50157193 - 50157606
Alignment:
| Q |
5 |
cactgtctcggttggcaaaacataatagagcggagtgcatggatgttggaacttaattgttttggtctttgttgctttaactcaagtctcgtgaaattat |
104 |
Q |
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| T |
50157193 |
cactgtctcagttggcaaaacataatagagcggagtgcatggatgttggaacttaattgttttggtctttgttgctttaactcaagtctcgtgaaattat |
50157292 |
T |
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| Q |
105 |
ctggaatgcaagtcctatagccttgtgttttttctatcatgatgcttttcaccttacaaaatgattagagcttagttgttttagcccaagtctcgtgaga |
204 |
Q |
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| T |
50157293 |
ctggaatgcaagtcctatagccttgtgttttttctatcatgatgcttttcaccttacaaactgattagagcttagttgttttagcccaagtctcgtgaga |
50157392 |
T |
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| Q |
205 |
ttacttgtaacacaagtcatctagccttgtgttttagttgagagaagacaaacattttttgagtcaactgttcggtcagatttgaccataaaacatcata |
304 |
Q |
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| T |
50157393 |
ttacttgtaacacaagtcatctagccttgtgttttagttgagagaagacaaaccttttttgagccaactgttcggccaggtttgaccataaaacatcaga |
50157492 |
T |
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| Q |
305 |
gga------aagagaaaactagagattagaagaggttggaaaatccctaatacattggaaacaagatgatgatgatgcataaaggataaagttgagatac |
398 |
Q |
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| T |
50157493 |
ggagacaccaagagaaaactagagattagaagaggttggaaaatccctaatacattggaaacaagatgatgatgatgcatcaaggataaagttgagatac |
50157592 |
T |
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| Q |
399 |
ataaaaaacttgat |
412 |
Q |
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| T |
50157593 |
acaagaaacttgat |
50157606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 233
Target Start/End: Original strand, 27220058 - 27220112
Alignment:
| Q |
179 |
gttgttttagcccaagtctcgtgagattacttgtaacacaagtcatctagccttg |
233 |
Q |
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| T |
27220058 |
gttgttttagcctatgtctcttgagattacttgtaatgcaagtcatctagccttg |
27220112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 233
Target Start/End: Original strand, 27214088 - 27214142
Alignment:
| Q |
179 |
gttgttttagcccaagtctcgtgagattacttgtaacacaagtcatctagccttg |
233 |
Q |
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| T |
27214088 |
gttgttttagcctacgtctcatgagattacttgtaatgcaagtaatctagccttg |
27214142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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