View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0545_high_12 (Length: 381)
Name: NF0545_high_12
Description: NF0545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0545_high_12 |
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| [»] scaffold0727 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 30 - 374
Target Start/End: Original strand, 25928008 - 25928352
Alignment:
| Q |
30 |
ctaacaagaagcttcacaccatattttggtaccaacagaaaattggacacagggcaatggacataatttggtgacagtttgaactcgaaattattgacaa |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25928008 |
ctaacaagaagcttcacaccatattttggtaccaacagaaaattggacgcagggcaatggacataatttggtgacagtttgaactcgaaattattgacaa |
25928107 |
T |
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| Q |
130 |
gaacaccaagaacaatcttaatttctgtcagggtaaagttttggcctaagcaatgtcgacttccatatccaaatggtagataagcttgaggatacttaca |
229 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25928108 |
gaagaccaagaacaatcttaatttctgtcagggtaaagttttggcctaagcaatgtcgacttccatatccaaatggtagataagcttgaggatacttaca |
25928207 |
T |
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| Q |
230 |
agctccagaaagaccattagcaaatctttctggcttgaattctgtagcatccggtccccaattatcagtgtcgcgatgcagcaatgggacgaacatccat |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25928208 |
agctccagaaagaccattagcaaatctttctggcttgaattctgtagcatccggtccccaattatcagtgtcgcgatgcagcaatgggacgaacatccat |
25928307 |
T |
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| Q |
330 |
atgtagagtcctttagggagaactaagtttccgatcttcatctca |
374 |
Q |
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| T |
25928308 |
atgtagagtcctttagggagaactaagtttccgatcttcatctca |
25928352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0727 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: scaffold0727
Description:
Target: scaffold0727; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 30 - 271
Target Start/End: Original strand, 2029 - 2270
Alignment:
| Q |
30 |
ctaacaagaagcttcacaccatattttggtaccaacagaaaattggacacagggcaatggacataatttggtgacagtttgaactcgaaattattgacaa |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2029 |
ctaacaagaagcttcacaccatattttggtaccaacagaaaattggacgcagggcaatggacataatttggtgacagtttgaactcgaaattattgacaa |
2128 |
T |
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| Q |
130 |
gaacaccaagaacaatcttaatttctgtcagggtaaagttttggcctaagcaatgtcgacttccatatccaaatggtagataagcttgaggatacttaca |
229 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2129 |
gaagaccaagaacaatcttaatttctgtcagggtaaagttttggcctaagcaatgtcgacttccatatccaaatggtagataagcttgaggatacttaca |
2228 |
T |
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| Q |
230 |
agctccagaaagaccattagcaaatctttctggcttgaattc |
271 |
Q |
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| T |
2229 |
agctccagaaagaccattagcaaatctttctggcttgaattc |
2270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 150 - 309
Target Start/End: Complemental strand, 26135393 - 26135234
Alignment:
| Q |
150 |
atttctgtcagggtaaagttttggcctaagcaatgtcgacttccatatccaaatggtagataagcttgaggatacttacaagctccagaaagaccattag |
249 |
Q |
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|||||||| | || ||||||||| |||| ||||||||||| ||| ||||||||||| ||| || |||||||||||||| | | |||||| ||| |||| |
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| T |
26135393 |
atttctgtaatggaaaagttttgacctagacaatgtcgactcccaagtccaaatggtatatatgcctgaggatacttacatgatgcagaaacaccgttag |
26135294 |
T |
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| Q |
250 |
caaatctttctggcttgaattctgtagcatccggtccccaattatcagtgtcgcgatgca |
309 |
Q |
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||||||| ||||| ||||| | ||||||||| |||||||||||||||| ||| ||||||| |
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| T |
26135293 |
caaatctctctggattgaactttgtagcatctggtccccaattatcagcgtctcgatgca |
26135234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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