View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0545_high_17 (Length: 372)

Name: NF0545_high_17
Description: NF0545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0545_high_17
NF0545_high_17
[»] chr4 (2 HSPs)
chr4 (6-338)||(54080248-54080580)
chr4 (102-221)||(54083555-54083669)


Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 6 - 338
Target Start/End: Original strand, 54080248 - 54080580
Alignment:
Q  6 ctccaataatatgatcattaacaaatgaatccaaaagaagagttcagaaatgatcaatgatcccccactgagtaagtcactctcagaagggtaaatataa 105  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  54080248 ctccaaaaatatgatcattaacaaatgaatccaaaagaagagttcagaaatgatcaatgatcccctactgagtaagtcactctcagaagggtaaatataa 54080347  T
Q  106 tagcattcttgaaccatgtataagaatgaacacctagatatagtaatctaagtgcaaattggtcaccatgcaacaaaaagttaatgatatatataccact 205  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54080348 tagcattcttgaaccttgtataagaatgaacacctagatatagtaatctaagtgcaaattggtcaccatgcaacaaaaagttaatgatatatataccact 54080447  T
Q  206 attaccttatacaaaacttagggaactgacagtggcaccaccactattggcaaaacaaaaagtagactttctggtgcacagacaaaatccctacctcacc 305  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54080448 attaccttatacaaaacttaggagactgacagtggcaccaccactattggcaaaacaaaaagtagactttctggtgcacagacaaaatccctacctcacc 54080547  T
Q  306 tataaccatgagatgagctgttcacgcaaagga 338  Q
    ||||||||||||||||||||| |||||||||||    
T  54080548 tataaccatgagatgagctgtccacgcaaagga 54080580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 102 - 221
Target Start/End: Original strand, 54083555 - 54083669
Alignment:
Q  102 ataatagcattcttgaaccatgtataagaatgaacacctagatatagtaatctaagtgcaaattggtcaccatgcaacaaaaagttaatgatatatatac 201  Q
    |||| |||||||||||||| |  |||||||||| |||| ||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||    ||    
T  54083555 ataaaagcattcttgaaccttccataagaatgagcacc-agatatagtaatctaggtgcaaattgatcatcatgcaacaaaaagttaatgatat----ac 54083649  T
Q  202 cactattaccttatacaaaa 221  Q
    ||||| || |||||||||||    
T  54083650 cactactagcttatacaaaa 54083669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University