View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0545_high_19 (Length: 352)
Name: NF0545_high_19
Description: NF0545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0545_high_19 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 30 - 352
Target Start/End: Complemental strand, 9222208 - 9221886
Alignment:
| Q |
30 |
agttttgatccatccatttctgaaattttatccaatctatgattttaatcattgagtttaaaaaagtgacaatataatgtgtgacctgacatgaaacgaa |
129 |
Q |
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| T |
9222208 |
agttttgatccctccatttctgaaattttatccaatctacgattttaatcattgagtttaaaaaagtgacaatataatgtgtgacctgacaagaaacgaa |
9222109 |
T |
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| Q |
130 |
aacttaattgttgagttgtcaaaagtagaggcttaaactaagtcgtgaccaaacatacatggtcaaaagaagatcaattgaaatgatacaaaaggtttaa |
229 |
Q |
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| T |
9222108 |
aacttaattgttgagtcgtcaaaagtagaggcttaaactaagtcgtgaccaaacatacatagtcaaaagaagatcaattgaaatgatacaaaaggtttag |
9222009 |
T |
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| Q |
230 |
agtgaacaatttattagtacgtcatcaaatgaaa-gggggaccaaaattttatgattagaaatagggggagcaaaacggcggttttcccaaaatagaagg |
328 |
Q |
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| T |
9222008 |
aatgaacaatttattagtacgtcatcaaatgaaacgggggaccaaaattctatgattagaaatagggggagcaaaacggcggttttcccaaaatagaagg |
9221909 |
T |
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| Q |
329 |
atgaaaacaacaatttaaatcatt |
352 |
Q |
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| T |
9221908 |
atgaaaacaac-atttaaatcatt |
9221886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 194 - 244
Target Start/End: Original strand, 10565594 - 10565644
Alignment:
| Q |
194 |
aaaagaagatcaattgaaatgatacaaaaggtttaaagtgaacaatttatt |
244 |
Q |
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| T |
10565594 |
aaaagaagatcaattgaaatgatacaagaggttgagagtgaacaatttatt |
10565644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 244
Target Start/End: Original strand, 33333839 - 33333904
Alignment:
| Q |
179 |
caaacatacatggtcaaaagaagatcaattgaaatgatacaaaaggtttaaagtgaacaatttatt |
244 |
Q |
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|||| |||||| || ||||||||||||||||||||||||||| ||||| |||| ||||||||||| |
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| T |
33333839 |
caaatatacatagttaaaagaagatcaattgaaatgatacaagaggttggaagtaaacaatttatt |
33333904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 33971208 - 33971160
Alignment:
| Q |
192 |
tcaaaagaagatcaattgaaatgatacaaaaggtttaaagtgaacaatt |
240 |
Q |
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| T |
33971208 |
tcaaaagaagatcaattgaaatgataaaaggggattagagtgaacaatt |
33971160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 244
Target Start/End: Complemental strand, 50815234 - 50815184
Alignment:
| Q |
194 |
aaaagaagatcaattgaaatgatacaaaaggtttaaagtgaacaatttatt |
244 |
Q |
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||||||||||||||| |||||||| |||||||| ||| ||||||||||||| |
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| T |
50815234 |
aaaagaagatcaattaaaatgatataaaaggttgaaaatgaacaatttatt |
50815184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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