View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0545_high_3 (Length: 610)
Name: NF0545_high_3
Description: NF0545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0545_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 476; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 10 - 509
Target Start/End: Complemental strand, 54688570 - 54688071
Alignment:
| Q |
10 |
aagaatatggggtaaataaccttttggattgttccttaaggctattagatgtgtgtagtgcagctaaagatgctttaattcacacaaaagaatgcacaag |
109 |
Q |
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||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54688570 |
aagaaaatggggtaaataaccttttggatggttccttaaggctattagatgtgtgtagtgcagctaaagatgctttaattcacacaaaagaatgcacaag |
54688471 |
T |
|
| Q |
110 |
ggaacttcaatccctcataagaagaagcaaaagaagaggaagcggtgaagtcgaactcacttcagaagttaagaagttcttgatatccaggaaggtagtg |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54688470 |
ggaacttcaatccctcataagaagaagcaaaagaagaggaagcggtgaagtcgaactcacttcagaagttaagaagttcttgatatccaggaaggtagtg |
54688371 |
T |
|
| Q |
210 |
agaaagtcaatctccaaaaccttggtaaatttgaagggaaatgccaaaaatagcaacatcttatctacaaacaaagaccatcaaacagtggctttgatta |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54688370 |
agaaagtcaatctccaaaaccttggtaaatttgaagggaaatgccaaaaatagcaacatcttatctacaaacaaagaccatcaaacagtggctttgatta |
54688271 |
T |
|
| Q |
310 |
acttattacaagatgttgaagtggcaaccctatctacatttcagacaatattgcaatttatatcagggaccacacagtcaaagtcaaacagctggggttc |
409 |
Q |
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| T |
54688270 |
acttattacaagatgttgaagtggcaaccctatctacatttcaggcagtattgcaatttatatcagggaccacacagtcaaagtcaaacagctggggttc |
54688171 |
T |
|
| Q |
410 |
catttccaagttaattcagcccaaaagagtttcctgctccctagtggcagatgaaagtgaatttgcccaagtggatggagcattgcagtcttttgtactt |
509 |
Q |
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| T |
54688170 |
catttccaagctaattcagcccaaaagagtttcctgctccctagtggcagatgaaagtgaatttgcccaagtggatggagcattgcagtcttttatactt |
54688071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 10 - 506
Target Start/End: Complemental strand, 54700503 - 54700019
Alignment:
| Q |
10 |
aagaatatggggtaaataaccttttggattgttccttaaggctattagatgtgtgtagtgcagctaaagatgctttaattcacacaaaagaatgcacaag |
109 |
Q |
| |
|
||||| || ||||||||||||| |||||| | |||||||||||||||||||||||||| ||||| |||||||||||| | || ||||||||||| ||||| |
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| T |
54700503 |
aagaaaattgggtaaataacctcttggatggatccttaaggctattagatgtgtgtagcgcagccaaagatgctttactgcatacaaaagaatgtacaag |
54700404 |
T |
|
| Q |
110 |
ggaacttcaatccctcataagaagaagcaaaagaagaggaagcggtgaagtcgaactcacttcagaagttaagaagttcttgatatccaggaaggtagtg |
209 |
Q |
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||||||||||||| ||||||||||||| ||| | || | | || |||||| |||| | |||||| ||| ||| ||| || ||||||||| |
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| T |
54700403 |
ggaacttcaatccatcataagaagaagg---------gga---gatggattggagctcactgcagaggctaagaaattcatgacatcaagaaaggtagtg |
54700316 |
T |
|
| Q |
210 |
agaaagtcaatctccaaaaccttggtaaatttgaagggaaatgccaaaaatagcaacatcttatctacaaacaaagaccatcaaacagtggctttgatta |
309 |
Q |
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| |||| | ||||||||| |||||| |||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
54700315 |
aaaaaggccatctccaaagccttggcaaatttgaagggaaataccaaacatagcaacatcttatctacaaacaatgaccatcaaacagtggctttgatta |
54700216 |
T |
|
| Q |
310 |
acttattacaagatgttgaagtggcaaccctatctacatttcagacaatattgcaatttatatcagggaccacacagtcaaagtcaaacagctggggttc |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||| ||||||||||||||||| |
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| T |
54700215 |
gcttattacaagatgttgaagtggcaaccctatctacatttcagacaatattgcaatttatctcggggacaacacagtcaaaatcaaacagctggggttc |
54700116 |
T |
|
| Q |
410 |
catttccaagttaattcagcccaaaagagtttcctgctccctagtggcagatgaaagtgaatttgcccaagtggatggagcattgcagtcttttgta |
506 |
Q |
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||||||||| | |||||||| ||||||||| | ||||| ||| || ||||||||||||||||| |||||||||||| |||||||||||| |||||| |
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| T |
54700115 |
catttccaaacttattcagccgaaaagagttgcttgctcactattgacagatgaaagtgaattttcccaagtggatgtagcattgcagtcctttgta |
54700019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 201 - 505
Target Start/End: Complemental strand, 54692971 - 54692657
Alignment:
| Q |
201 |
aaggtagtgagaaagtcaatctccaaaaccttggtaaatttgaagggaaatgccaaaaatagcaacatcttatctacaaacaaagaccatcaaacagtgg |
300 |
Q |
| |
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|||||||||| |||| | || |||||| ||||| |||||||||||| | | ||||| || |||||||| ||||||||||||||||||||| ||||| |
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| T |
54692971 |
aaggtagtgaaaaaggccatttccaaagccttgacaaatttgaagggcactaccaaatattataacatcttgtctacaaacaaagaccatcaatcagtga |
54692872 |
T |
|
| Q |
301 |
-----ctttgattaacttattacaagatgttgaagtggcaaccctatctacatttcagacaatattgcaatttatatcagggaccacacagtcaaagtca |
395 |
Q |
| |
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| ||||||||||||||||||||||||||| |||| || |||||||||||| ||| |||| ||||||| || ||||| | |||||||||||||||| |
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| T |
54692871 |
agtgacattgattaacttattacaagatgttgaattggctacactatctacatttgagataatactgcaattcatctcaggtagcacacagtcaaagtca |
54692772 |
T |
|
| Q |
396 |
aacagctggggttccatttccaagttaattcagcc---caaaagagtttcctgctccctagtggcagatgaaagtgaatttgcccaag--tggatggagc |
490 |
Q |
| |
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|||| ||| ||||||||||||| |||||||||| ||||||||||| ||||| ||| ||||||| || ||||||||| | |||| |||||| ||| |
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| T |
54692771 |
aacacttggctttccatttccaagctaattcagcctaataaaagagtttcttgctcactattggcagaagagagtgaattttctcaagtatggatgtagc |
54692672 |
T |
|
| Q |
491 |
attgcagtcttttgt |
505 |
Q |
| |
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|||||| || ||||| |
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| T |
54692671 |
attgcaatcctttgt |
54692657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 54 - 136
Target Start/End: Complemental strand, 54693102 - 54693016
Alignment:
| Q |
54 |
ttagatgtgtgtagtgcagctaa----agatgctttaattcacacaaaagaatgcacaagggaacttcaatccctcataagaagaag |
136 |
Q |
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||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||| |
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| T |
54693102 |
ttagatgtgtgcagtgcagctaattaaagatgctttacttcacacaaaagaatgcacaagggaacttcagtccatcataagaagaag |
54693016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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