View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0545_low_1 (Length: 982)
Name: NF0545_low_1
Description: NF0545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0545_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 623; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 623; E-Value: 0
Query Start/End: Original strand, 70 - 856
Target Start/End: Complemental strand, 23077611 - 23076819
Alignment:
| Q |
70 |
tctgctggtagtttgtggtatgtgttagggtacatggaagcagtaaagaggatnnnnnnnggtgatagagtttttatgataagcattggtgctggattta |
169 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
23077611 |
tctgctggtagtttgtggtatgtgttagggtacatggaagccaaaaagaggctaaaaaaaggtgatagagtttttatgataagctttggtgctggattta |
23077512 |
T |
|
| Q |
170 |
aatgcaatagttgcttatgggaagtgatgaaagatgttggagatgaaaatgtatgggaagattgtattgatgattatccacaagagtctgtgatcgatcc |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||| |||| |
|
|
| T |
23077511 |
aatgcaatagttgcttatgggaagtgatgaaagatgttggagatgcaaatgtatgggaagattgtattgatgattatccaccagagtctttgatcaatcc |
23077412 |
T |
|
| Q |
270 |
tttcatggagaagtatggttggctcaatgaagttgaggatgcaacgaactttgaccttcctgaatttcttaagtgaatgtaattataatttcattcattg |
369 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
23077411 |
tttcatggagaagtatggttggctcaatgaagttgaggatgaaaccaactttgaacttcctgaatttcttaagtgaaggtaattataatttcattcattg |
23077312 |
T |
|
| Q |
370 |
ttgtggaatgaaatagcaaacttgagaagaagaaaatttgaaggggtatcttaannnnnnnactagattcttgacaaggatcaaggtgattgtgcattaa |
469 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23077311 |
ttgtggaatgaaatagcaaacttgagaagaagaaaatttgaaggggtatcttaattttttcactagattcttgacaaggatcaaggtgattgtgcattaa |
23077212 |
T |
|
| Q |
470 |
ctaatttgattattatgtatacacttgttattatta----tattattgaaaccatgatcaatggtttactacccaataaagagtttgtctactttctgtt |
565 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
23077211 |
ctaatttgattattatgtatacacttgttattataattattattattgaaaccctgatcaatggtttactacccaataaagagtttgtctactttttgtt |
23077112 |
T |
|
| Q |
566 |
catctttaatttgtttatatat--atattgtggggacctggttcgtttcttttggattaggatttctctatttttcaagtgaaatagatagttcaatttg |
663 |
Q |
| |
|
|||||||| ||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23077111 |
catctttatttttcttatatatacatattgtggggacctggttggtttcttttggattaggatttctctatttttcaagtgaaatagatagttcaatttg |
23077012 |
T |
|
| Q |
664 |
aagagagagaaatagttcaattttaagatagtttttgtactaataaaattgtttaaaatgtaagcaaatggtagacaaaaattatatcttacaatatatc |
763 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
23077011 |
aagagagagaaatagttcaatttgaagatagtttttgtactaataaaattgtttaaaatgtaagcaaatggtagacaaaaattaaatcttacaatatatc |
23076912 |
T |
|
| Q |
764 |
tttaatatttataccatcgtcttcaaattgggaaaagtattaaggaagttacatggtagttgtgttagttaaagcaggacaattttaacttag |
856 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
23076911 |
tttaatatttataccatcgtcttcaaattgggaaaagtattaggcaagttacatggtagttgtgttagttagagcaggacaattttaacttag |
23076819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 169; E-Value: 4e-90
Query Start/End: Original strand, 70 - 389
Target Start/End: Complemental strand, 23073006 - 23072688
Alignment:
| Q |
70 |
tctgctggtagtttgtggtatgtgttagggtacatggaagcagtaaagaggatnnnnnnnggtgatagagtttttatgataagcattggtgctggattta |
169 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||||||| ||||||| | ||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
23073006 |
tctgctagtagcttgtggtatgtgttagggtacatggaagcaaaaaagaggctcaagaaaggtgatagagtatttatgataagctttggtgctggattta |
23072907 |
T |
|
| Q |
170 |
aatgcaatagttgcttatgggaagtgatgaaagatgttggagatgaaaatgtatgggaagattgtattgatgattatccacaagagtctgtgatcgatcc |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||| | ||||| || || |||| |
|
|
| T |
23072906 |
aatgcaatagttgcttatgggaagtgatgaaagatgttggagatgcaaatgtttgggaagattgtattgataattatccaccaaagtctttggtcaatcc |
23072807 |
T |
|
| Q |
270 |
tttcatggagaagtatggttggctcaatgaagttgaggatgcaacgaactttgaccttcctgaatttcttaagtgaatgtaattataatttcattc-att |
368 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||| | | |||| ||| |||||||||||||| ||||||| ||||| ||||||||||| || |
|
|
| T |
23072806 |
tttcatggagaagtatagttgggtcaatgaagttgaggatcctaacaactatgatcttcctgaatttctcaagtgaaggtaat--taatttcattcaatc |
23072709 |
T |
|
| Q |
369 |
gttgtggaatgaaatagcaaa |
389 |
Q |
| |
|
||||||||||||||| |||| |
|
|
| T |
23072708 |
attgtggaatgaaataccaaa |
23072688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 159; E-Value: 4e-84
Query Start/End: Original strand, 70 - 345
Target Start/End: Original strand, 23111331 - 23111606
Alignment:
| Q |
70 |
tctgctggtagtttgtggtatgtgttagggtacatggaagcagtaaagaggatnnnnnnnggtgatagagtttttatgataagcattggtgctggattta |
169 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||||||| ||||||| | ||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
23111331 |
tctgctagtagcttgtggtatgtgttagggtacatggaagcaaaaaagaggctcaagaaaggtgatagagtatttatgataagctttggtgctggattta |
23111430 |
T |
|
| Q |
170 |
aatgcaatagttgcttatgggaagtgatgaaagatgttggagatgaaaatgtatgggaagattgtattgatgattatccacaagagtctgtgatcgatcc |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||| ||||| || || |||| |
|
|
| T |
23111431 |
aatgcaatagttgcttatgggaagtgatgaaagatgttggagatgcaaatgtttgggaagattgtattgataattatccacctaagtctttggtcaatcc |
23111530 |
T |
|
| Q |
270 |
tttcatggagaagtatggttggctcaatgaagttgaggatgcaacgaactttgaccttcctgaatttcttaagtga |
345 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| ||| || | ||| |||||||| |||||||||||| |
|
|
| T |
23111531 |
tttcatggagaagtatggttgggtcaatgaagttgaggatccaaacaattatgaacttcctgattttcttaagtga |
23111606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 858 - 969
Target Start/End: Complemental strand, 23076671 - 23076560
Alignment:
| Q |
858 |
atagaaagtcctttgaggaatgactgaatgacttagaccctatctagaccgagaggattcaactagccaatacacaacacttttacccggcgcatggctc |
957 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
23076671 |
atagaaagtcctttgaggaatgactgaaagacttagaccctatctagaccgagaggattcaactagccaatacacaacacttttacccgacgcatggctc |
23076572 |
T |
|
| Q |
958 |
ttatcaatgcct |
969 |
Q |
| |
|
|||||||||||| |
|
|
| T |
23076571 |
ttatcaatgcct |
23076560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 894 - 933
Target Start/End: Complemental strand, 23076518 - 23076479
Alignment:
| Q |
894 |
accctatctagaccgagaggattcaactagccaatacaca |
933 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23076518 |
accctatctagaccgagaggattcaactagccaatacaca |
23076479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 2e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 50157193 - 50157260
Alignment:
| Q |
3 |
cactgtctcggttggcaaaacataatagagcggagtgcatggatgttggaacttaattgttttggtct |
70 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50157193 |
cactgtctcagttggcaaaacataatagagcggagtgcatggatgttggaacttaattgttttggtct |
50157260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 141 times since January 2019
Visitors: 3647