View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0545_low_10 (Length: 455)
Name: NF0545_low_10
Description: NF0545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0545_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 29 - 419
Target Start/End: Original strand, 758283 - 758673
Alignment:
| Q |
29 |
aaatccacagcacaggaggtccttgtttgctactgttctttagtatatgtcctcttccattctgttctatttatcatcatgttgtgtttctcactttggt |
128 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
758283 |
aaatccacagcacaggaggtccttgtttgctactgttctttagtatttgtcctcttccattctgttctatttatcatcatgttgtgtttctcactttggt |
758382 |
T |
|
| Q |
129 |
ttcttaacaaaataaattagggggatgtgttgtagtatgttattggtaatgatatcagaaattgtaatgattaaggttgttgttaataattaatatatta |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |
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| T |
758383 |
ttcttaacaaaataaattagggggatgtgttgtagtatgttattggtaatgatatcacaaattgtaatgattaaggttgttgttgataattaatatatta |
758482 |
T |
|
| Q |
229 |
attatgatgactcatggaggctggatcttagttatgctaatcaaattaattaattaatcaatcattccaacatgtatttatgctagaatcttaatgttca |
328 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
758483 |
attatgatgactcatggaggctagatcttagttatgctaatcaaattaattaattaatcaatcattccaacatgtatttatgctagaatcttaatgttca |
758582 |
T |
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| Q |
329 |
tgagaagaatgaaataagaagtgataaactaaaacagatcaacaagaggaatcaaaaagaaaagaaaatatatattacttggtaggtgtga |
419 |
Q |
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| T |
758583 |
tgagaagaatgaaataagaagtgataaactaaaacagatcaacaagaggaatcaaaaagaaaagaaaatatatattacttggtaggtgtga |
758673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 357; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 29 - 417
Target Start/End: Complemental strand, 36989088 - 36988700
Alignment:
| Q |
29 |
aaatccacagcacaggaggtccttgtttgctactgttctttagtatatgtcctcttccattctgttctatttatcatcatgttgtgtttctcactttggt |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36989088 |
aaatccacagcacaggaggtccttgtttgctactgttctttagtatttgtcctcttccattctgttctatttatcatcatgttgtgtttctcactttggt |
36988989 |
T |
|
| Q |
129 |
ttcttaacaaaataaattagggggatgtgttgtagtatgttattggtaatgatatcagaaattgtaatgattaaggttgttgttaataattaatatatta |
228 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
36988988 |
ttcttaacaaattaaattacggggatgtgttgtagtatgttattggtaatgatatcacaaattgtaatgattaaggttgttgttaataattaatatatta |
36988889 |
T |
|
| Q |
229 |
attatgatgactcatggaggctggatcttagttatgctaatcaaattaattaattaatcaatcattccaacatgtatttatgctagaatcttaatgttca |
328 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
36988888 |
attatgatgactcatggaggctagatcttagttatgctaatcaaattaattaattaatcaattattccaacatgtatttatgctagaatcttaatgttca |
36988789 |
T |
|
| Q |
329 |
tgagaagaatgaaataagaagtgataaactaaaacagatcaacaagaggaatcaaaaagaaaagaaaatatatattacttggtaggtgt |
417 |
Q |
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| T |
36988788 |
tgagaagaatgaaataagaagtgataaactaaaacagatcaacaagaggaattaaaaagaaaataaaatatatattacttggtaggtgt |
36988700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 29 - 417
Target Start/End: Complemental strand, 37014527 - 37014139
Alignment:
| Q |
29 |
aaatccacagcacaggaggtccttgtttgctactgttctttagtatatgtcctcttccattctgttctatttatcatcatgttgtgtttctcactttggt |
128 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37014527 |
aaatccacagcacaggaggtccttgtttgctactgttctttagtatttgtcctcttccattctgttctatttatcatcatgttgtgtttctcactttggt |
37014428 |
T |
|
| Q |
129 |
ttcttaacaaaataaattagggggatgtgttgtagtatgttattggtaatgatatcagaaattgtaatgattaaggttgttgttaataattaatatatta |
228 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
37014427 |
ttcttaacaaattaaattacggggatgtgttgtagtatgttattggtaatgatatcacaaattgtaatgattaaggttgttgttaataattaatatatta |
37014328 |
T |
|
| Q |
229 |
attatgatgactcatggaggctggatcttagttatgctaatcaaattaattaattaatcaatcattccaacatgtatttatgctagaatcttaatgttca |
328 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
37014327 |
attatgatgactcatggaggctagatcttagttatgctaatcaaattaattaattaatcaattattccaacatgtatttatgctagaatcttaatgttca |
37014228 |
T |
|
| Q |
329 |
tgagaagaatgaaataagaagtgataaactaaaacagatcaacaagaggaatcaaaaagaaaagaaaatatatattacttggtaggtgt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |
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| T |
37014227 |
tgagaagaatgaaataagaagtgataaactaaaacagatcaacaagaggaattaaaaagaaaataaaatatatattacttggtaggtgt |
37014139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 36443639 - 36443693
Alignment:
| Q |
168 |
ttattggtaatgatatcagaaattgtaatgattaaggttgttgttaataattaat |
222 |
Q |
| |
|
|||||||||||||||||| |||||||||| | ||||||||||||||||||||||| |
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|
| T |
36443639 |
ttattggtaatgatatcacaaattgtaataactaaggttgttgttaataattaat |
36443693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 335 - 405
Target Start/End: Original strand, 36443810 - 36443880
Alignment:
| Q |
335 |
gaatgaaataagaagtgataaactaaaacagatcaacaagaggaatcaaaaagaaaagaaaatatatatta |
405 |
Q |
| |
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||||||| |||||||||||||||||| ||| |||||||| ||||| |||||||| ||||||||||||||| |
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| T |
36443810 |
gaatgaagtaagaagtgataaactaagacaaatcaacaaagggaattaaaaagaagagaaaatatatatta |
36443880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 300 - 416
Target Start/End: Original strand, 19180933 - 19181049
Alignment:
| Q |
300 |
atgtatttatgctagaatcttaatgttcatgagaagaatgaaataagaagtgataaactaaaacagatcaacaagaggaatcaaaaagaaaagaaaatat |
399 |
Q |
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|||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
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| T |
19180933 |
atgtatgtatgctagaatcttagtgttcatgagaagaatgaagtaagaagtgataatctaaaacagatcaacaagaggaattaaaaagaaaagaaaatat |
19181032 |
T |
|
| Q |
400 |
atattacttggtaggtg |
416 |
Q |
| |
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||||||||||||||||| |
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|
| T |
19181033 |
atattacttggtaggtg |
19181049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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