View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0545_low_12 (Length: 443)
Name: NF0545_low_12
Description: NF0545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0545_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 425; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Original strand, 56232446 - 56232878
Alignment:
| Q |
1 |
tttgataaacgtagggttcctttcattaccatgtctggaacatccatgtcatgtcctcatgtggctggagttgttggccttcttaagactctccacccca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56232446 |
tttgataaacgtagggttcctttcattaccatgtctggaacatccatgtcatgtcctcatgtggctggagttgttggccttcttaagactctccacccca |
56232545 |
T |
|
| Q |
101 |
actggagtccatccgctattaaatctgcaatcatgacaactggtaagttacctaacaccgttaggttactcatggaattattatatgattcattgagaat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
56232546 |
actggagtccatccgctattaaatctgcaatcatgacaactggtaagttacctaacaccgttaggttactcatggaattatgatatgattcattgagaat |
56232645 |
T |
|
| Q |
201 |
tactctatctgataatatgatgtgttttctttcagctaggacaagggacaacactcataaacctatcctcgatgatactaatgtcaaggcaacaccattt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
56232646 |
tactctatctgataatatgatgtgttttctttcagctaggacaagggacaacactcacaaacctatcctcgatgatactaatgtcaaggcaacaccattt |
56232745 |
T |
|
| Q |
301 |
gcttacggttctggtcacattagaccaaatcgtgccatggatcctggcttggtctatgagttaaacatcaatgattacctaaactttctttgtttccttg |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56232746 |
gcttacggttctggtcacattagaccaaatcgtgccatggatcctggcttggtctatgagttaaacatcaatgattacctaaactttctttgtttccttg |
56232845 |
T |
|
| Q |
401 |
gttataaccaagcacaaattactatgttctctg |
433 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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| T |
56232846 |
gttataaccaagcacaaattactatgttctctg |
56232878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 146
Target Start/End: Complemental strand, 42761348 - 42761220
Alignment:
| Q |
18 |
tcctttcattaccatgtctggaacatccatgtcatgtcctcatgtggctggagttgttggccttcttaagactctccaccccaactggagtccatccgct |
117 |
Q |
| |
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|||||| ||||| ||||| || || || ||||||||||||||||| || ||| ||||||| || ||||| || |||| || | ||||||||| | ||| |
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|
| T |
42761348 |
tccttttattactatgtcaggcacttcgatgtcatgtcctcatgttgccggacttgttgggctgcttaaatctatccatcctgattggagtccagctgct |
42761249 |
T |
|
| Q |
118 |
attaaatctgcaatcatgacaactggtaa |
146 |
Q |
| |
|
|| || || ||||||||||| || ||||| |
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| T |
42761248 |
atcaagtcagcaatcatgactacaggtaa |
42761220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 158; Significance: 6e-84; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 210 - 431
Target Start/End: Original strand, 39190602 - 39190823
Alignment:
| Q |
210 |
tgataatatgatgtgttttctttcagctaggacaagggacaacactcataaacctatcctcgatgatactaatgtcaaggcaacaccatttgcttacggt |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||| ||||||||||||||||||||||| |||||| |
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| T |
39190602 |
tgataatatgatgtgttttctttcagctaggacaagggacaacactgttaaacctatcgttgatgatattaatgtcaaggcaacaccatttgactacggt |
39190701 |
T |
|
| Q |
310 |
tctggtcacattagaccaaatcgtgccatggatcctggcttggtctatgagttaaacatcaatgattacctaaactttctttgtttccttggttataacc |
409 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||| | |||||||||| |
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|
| T |
39190702 |
tctggtcacataagaccaaatcgtgccatggatcctggtttggtgtatgagttaaacatcaatgattacataaactttctttgtttcttaggttataacc |
39190801 |
T |
|
| Q |
410 |
aagcacaaattactatgttctc |
431 |
Q |
| |
|
|| ||||||||| |||||||| |
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|
| T |
39190802 |
aaacacaaattagcatgttctc |
39190823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 3 - 189
Target Start/End: Original strand, 39190263 - 39190449
Alignment:
| Q |
3 |
tgataaacgtagggttcctttcattaccatgtctggaacatccatgtcatgtcctcatgtggctggagttgttggccttcttaagactctccaccccaac |
102 |
Q |
| |
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|||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| | |
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| T |
39190263 |
tgataaacgtagggttcctttcatgacaatgtctggaacatccatgtcatgccctcatgtggctggagtcgttggccttcttaagactctccaccccacc |
39190362 |
T |
|
| Q |
103 |
tggagtccatccgctattaaatctgcaatcatgacaactggtaagttacctaacaccgttaggttactcatggaattattatatgat |
189 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||| | ||||| | |||| ||||||||| ||| || ||||||| |
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|
| T |
39190363 |
tggagtccatcagctattaaatctgcaatcatgacaactggtaagtaatgtaacatcattagattactcatgaaatgatgatatgat |
39190449 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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