View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0545_low_15 (Length: 403)
Name: NF0545_low_15
Description: NF0545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0545_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 3e-98; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 183 - 393
Target Start/End: Original strand, 55312683 - 55312901
Alignment:
| Q |
183 |
ttaaaaaatttcatgcaaaatttgagaaaacgactaaatt--------gttcaatttaatggactaaatttctatctcacaaaattgagagggttaaata |
274 |
Q |
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| T |
55312683 |
ttaataaatttcatgcaaaatttgagaaaacaactaaattgattaattgttcaatttaatggactaaatttctatctcacaaaattgagagggttaaata |
55312782 |
T |
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| Q |
275 |
gattgagtgttacaatttcaagcatagtcgatcgaagtgatcaaacaaggaactagggacatgtttggtgtgcataatatgattgaaatatgacatgata |
374 |
Q |
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| T |
55312783 |
gattgagtgttacaatttcaagcatagtcgatcgaagtgatcaaacaaggaactagggacatgtttggtgtgcataatatgattgaaatatgacatgata |
55312882 |
T |
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| Q |
375 |
aaaagtttgataagaataa |
393 |
Q |
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| T |
55312883 |
aaaagtttgataagaataa |
55312901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 30 - 193
Target Start/End: Original strand, 55307468 - 55307630
Alignment:
| Q |
30 |
gtaaagtagcaacttagtctattaaaatgaaaaataccaatcattttaannnnnnnnatcaaaatatttctttagtagacatcgattcaaacaaataaaa |
129 |
Q |
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| T |
55307468 |
gtaaagtagcaacctagtctattaaaatgaaaaataccaatcattttaattttttt-atcaaaatatttctttagtagacatcgattcaaacaaataaaa |
55307566 |
T |
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| Q |
130 |
gacatgtatgccaacttaaatattcttttactgcatttaaacaagcactgattttaaaaaattt |
193 |
Q |
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| T |
55307567 |
gacatgtatgccaacttaaatattcttttactgcatttaaacaagcactgattttaaaaaattt |
55307630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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