View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0545_low_18 (Length: 379)
Name: NF0545_low_18
Description: NF0545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0545_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 1 - 370
Target Start/End: Complemental strand, 2332058 - 2331691
Alignment:
| Q |
1 |
cgttttgatccttgtctccccacaatcgtttctatttgacnnnnnnnc-atatattgtattactagttttaccttctcttttggttgtttggtagaggtt |
99 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
2332058 |
cgttttgatccttgtctccccacaatcgtttctatttgaatttttttatatatattgtattactagttttaccttctctttaggttgtttggtagaggtt |
2331959 |
T |
|
| Q |
100 |
ttctcttgcaaaattacttatgtgcagttcttcgaatagctagtgttcatccggttcataactttagttacaaaataaattattaaaactgcccaaccgc |
199 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2331958 |
ttctcttgcaaaaatacttatgtgcagttcttcgaatagctagtgttcatccggttcataactttagttacaaaataaattattaaaactgcccaaccgc |
2331859 |
T |
|
| Q |
200 |
cattaatccaaatcatttttaaacgacaatgtttaggtacattcatgtgaagaactgagcgaatagtgtgcagggaacgatacctaagtattctcctttc |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
2331858 |
cattaatccaaatcatttttaaacgacaatgtttaggtgcattcatgtgaaaaactgagcgaatagtgtgtagggaacgatacctaagtattctcctttc |
2331759 |
T |
|
| Q |
300 |
ttgtgttggttttcccttttaactgtttttcaccattattggtggtgatcattgttgtttcttagtattat |
370 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
2331758 |
ttgtgttggttttcccttttaactgtttttcacc---attggtggtgatcattgttgtttcttagtattat |
2331691 |
T |
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