View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0545_low_19 (Length: 379)

Name: NF0545_low_19
Description: NF0545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0545_low_19
NF0545_low_19
[»] chr4 (32 HSPs)
chr4 (57-339)||(13086206-13086488)
chr4 (203-363)||(13085139-13085299)
chr4 (238-349)||(22716574-22716686)
chr4 (238-349)||(22988531-22988643)
chr4 (234-324)||(6659416-6659506)
chr4 (234-355)||(9596854-9596975)
chr4 (226-355)||(54239513-54239640)
chr4 (203-335)||(2053083-2053214)
chr4 (263-355)||(19684789-19684880)
chr4 (216-335)||(22691205-22691325)
chr4 (203-349)||(38223089-38223233)
chr4 (56-122)||(44208610-44208676)
chr4 (203-320)||(4053030-4053145)
chr4 (66-112)||(31318059-31318105)
chr4 (56-125)||(53568888-53568957)
chr4 (74-122)||(33688428-33688476)
chr4 (56-112)||(44209988-44210044)
chr4 (57-112)||(35054920-35054975)
chr4 (66-112)||(10322822-10322868)
chr4 (66-156)||(25423145-25423234)
chr4 (56-122)||(35061309-35061375)
chr4 (56-122)||(31470697-31470763)
chr4 (56-125)||(53570742-53570811)
chr4 (68-112)||(25421811-25421855)
chr4 (66-122)||(37329892-37329948)
chr4 (66-125)||(15562674-15562732)
chr4 (74-145)||(40171370-40171441)
chr4 (66-113)||(45046718-45046764)
chr4 (299-352)||(2880169-2880221)
chr4 (87-156)||(11671095-11671164)
chr4 (66-122)||(11669865-11669921)
chr4 (56-112)||(53572030-53572086)
[»] chr8 (48 HSPs)
chr8 (203-355)||(18180738-18180890)
chr8 (66-172)||(42816061-42816167)
chr8 (216-324)||(22921936-22922046)
chr8 (216-324)||(22926734-22926842)
chr8 (232-324)||(42891750-42891842)
chr8 (236-324)||(22512132-22512220)
chr8 (241-324)||(22520885-22520968)
chr8 (226-324)||(6845241-6845339)
chr8 (56-163)||(39308311-39308418)
chr8 (232-321)||(42890309-42890392)
chr8 (216-324)||(23573477-23573586)
chr8 (234-355)||(4360860-4360982)
chr8 (66-125)||(13322929-13322988)
chr8 (74-161)||(39310574-39310661)
chr8 (66-125)||(39338010-39338069)
chr8 (67-125)||(1692632-1692690)
chr8 (232-324)||(37189778-37189869)
chr8 (226-342)||(38082155-38082271)
chr8 (275-355)||(12310816-12310895)
chr8 (254-325)||(23570516-23570588)
chr8 (56-112)||(37705869-37705925)
chr8 (203-300)||(26150572-26150669)
chr8 (74-133)||(14835072-14835130)
chr8 (66-121)||(37707218-37707273)
chr8 (228-354)||(9295242-9295366)
chr8 (66-112)||(24451223-24451269)
chr8 (66-140)||(42817184-42817257)
chr8 (73-122)||(41280237-41280286)
chr8 (66-122)||(13324045-13324101)
chr8 (66-122)||(21136435-21136491)
chr8 (66-122)||(24452594-24452650)
chr8 (268-355)||(2262692-2262778)
chr8 (66-112)||(16478608-16478654)
chr8 (56-122)||(21135055-21135121)
chr8 (74-112)||(35864164-35864202)
chr8 (74-112)||(36063928-36063966)
chr8 (78-112)||(45022019-45022053)
chr8 (226-350)||(15081477-15081599)
chr8 (78-122)||(35862794-35862838)
chr8 (8-52)||(40705498-40705542)
chr8 (66-112)||(16472735-16472781)
chr8 (66-112)||(16477306-16477352)
chr8 (74-112)||(21575561-21575599)
chr8 (290-324)||(22519432-22519466)
chr8 (290-355)||(10456252-10456316)
chr8 (56-112)||(36062536-36062593)
chr8 (56-112)||(35368922-35368978)
chr8 (74-122)||(39336767-39336815)
[»] chr2 (30 HSPs)
chr2 (203-353)||(8781395-8781544)
chr2 (203-355)||(22264317-22264468)
chr2 (232-324)||(27956240-27956332)
chr2 (216-322)||(2155861-2155968)
chr2 (232-324)||(33655538-33655631)
chr2 (232-324)||(27952404-27952496)
chr2 (226-350)||(18725654-18725778)
chr2 (263-355)||(44675277-44675368)
chr2 (216-322)||(2165817-2165924)
chr2 (234-322)||(31634017-31634105)
chr2 (234-324)||(31636250-31636340)
chr2 (239-324)||(22011353-22011439)
chr2 (237-355)||(5841221-5841337)
chr2 (66-122)||(20721042-20721098)
chr2 (66-122)||(44493994-44494050)
chr2 (74-112)||(21439049-21439087)
chr2 (66-112)||(42486797-42486843)
chr2 (74-112)||(43931893-43931931)
chr2 (74-122)||(20701004-20701052)
chr2 (56-112)||(20721725-20721781)
chr2 (66-122)||(23787365-23787421)
chr2 (74-122)||(33000724-33000772)
chr2 (66-122)||(33001356-33001412)
chr2 (78-122)||(38276099-38276143)
chr2 (66-112)||(1373309-1373355)
chr2 (66-112)||(20719541-20719587)
chr2 (56-106)||(42488178-42488228)
chr2 (66-112)||(1373705-1373751)
chr2 (66-112)||(9190100-9190146)
chr2 (77-119)||(34477224-34477266)
[»] chr6 (26 HSPs)
chr6 (203-348)||(11190381-11190524)
chr6 (215-355)||(26571044-26571183)
chr6 (216-324)||(3535929-3536037)
chr6 (216-324)||(3542140-3542248)
chr6 (216-323)||(30052096-30052205)
chr6 (232-323)||(30049827-30049918)
chr6 (56-155)||(7855350-7855449)
chr6 (216-355)||(2339107-2339243)
chr6 (237-324)||(29340892-29340980)
chr6 (264-355)||(13645865-13645955)
chr6 (203-335)||(2939768-2939898)
chr6 (66-112)||(15119345-15119391)
chr6 (226-355)||(8568646-8568772)
chr6 (280-355)||(19474678-19474752)
chr6 (203-355)||(3565620-3565768)
chr6 (67-109)||(17246588-17246630)
chr6 (74-112)||(8230953-8230991)
chr6 (77-122)||(18503473-18503518)
chr6 (226-350)||(27142537-27142659)
chr6 (77-112)||(5080012-5080047)
chr6 (68-111)||(22971640-22971683)
chr6 (68-111)||(23816715-23816758)
chr6 (66-112)||(5078741-5078787)
chr6 (56-102)||(7852283-7852329)
chr6 (66-112)||(22972290-22972336)
chr6 (66-112)||(23816062-23816108)
[»] chr7 (34 HSPs)
chr7 (74-172)||(38875003-38875101)
chr7 (232-353)||(4303361-4303482)
chr7 (226-324)||(13882772-13882870)
chr7 (203-355)||(31577238-31577389)
chr7 (226-322)||(13886276-13886372)
chr7 (203-348)||(5678275-5678418)
chr7 (203-348)||(5703327-5703470)
chr7 (56-161)||(43831904-43832009)
chr7 (280-355)||(22572444-22572518)
chr7 (56-165)||(43830687-43830796)
chr7 (238-324)||(859242-859329)
chr7 (238-324)||(1217246-1217333)
chr7 (203-347)||(4668229-4668372)
chr7 (87-135)||(38873938-38873986)
chr7 (75-165)||(43308510-43308600)
chr7 (66-112)||(46043412-46043458)
chr7 (66-122)||(3495403-3495459)
chr7 (8-52)||(19056879-19056923)
chr7 (268-355)||(32052989-32053074)
chr7 (74-122)||(33625900-33625948)
chr7 (56-112)||(15131833-15131889)
chr7 (57-109)||(38200076-38200128)
chr7 (241-347)||(32936824-32936927)
chr7 (56-122)||(46044788-46044854)
chr7 (66-112)||(46330541-46330587)
chr7 (66-112)||(46331871-46331917)
chr7 (74-125)||(3496673-3496722)
chr7 (56-112)||(33624520-33624576)
chr7 (66-122)||(38198807-38198863)
chr7 (74-122)||(43084332-43084380)
chr7 (56-112)||(44168286-44168341)
chr7 (232-275)||(4300468-4300511)
chr7 (56-103)||(45957841-45957888)
chr7 (56-101)||(43083063-43083108)
[»] chr1 (32 HSPs)
chr1 (203-354)||(42071378-42071528)
chr1 (216-324)||(50857530-50857640)
chr1 (243-363)||(12486274-12486392)
chr1 (216-322)||(13444076-13444183)
chr1 (232-324)||(8931132-8931223)
chr1 (226-341)||(12033620-12033736)
chr1 (226-299)||(50005237-50005309)
chr1 (238-324)||(13441685-13441772)
chr1 (66-112)||(29231082-29231128)
chr1 (66-112)||(33708064-33708110)
chr1 (226-349)||(45085651-45085774)
chr1 (56-122)||(46595888-46595954)
chr1 (66-122)||(33709440-33709496)
chr1 (66-122)||(36248078-36248134)
chr1 (66-112)||(12368715-12368761)
chr1 (56-122)||(15053381-15053447)
chr1 (62-112)||(36368398-36368448)
chr1 (66-112)||(37987198-37987244)
chr1 (234-363)||(40804573-40804700)
chr1 (202-353)||(42646558-42646702)
chr1 (68-112)||(21795897-21795941)
chr1 (66-122)||(30981495-30981550)
chr1 (74-125)||(15054684-15054735)
chr1 (74-125)||(29232136-29232187)
chr1 (74-112)||(21794831-21794869)
chr1 (56-122)||(36249354-36249419)
chr1 (66-122)||(30982852-30982908)
chr1 (311-355)||(49044165-49044209)
chr1 (226-355)||(16261517-16261646)
chr1 (77-112)||(36362234-36362269)
chr1 (66-112)||(37985953-37985999)
chr1 (56-112)||(534117-534173)
[»] chr3 (44 HSPs)
chr3 (203-355)||(19949885-19950036)
chr3 (232-324)||(5128820-5128912)
chr3 (220-355)||(20398455-20398590)
chr3 (247-353)||(40593501-40593605)
chr3 (237-355)||(4580479-4580596)
chr3 (203-314)||(19795135-19795244)
chr3 (203-353)||(41218686-41218835)
chr3 (238-324)||(3063823-3063910)
chr3 (238-324)||(3068961-3069048)
chr3 (236-347)||(25340146-25340256)
chr3 (74-165)||(19825334-19825425)
chr3 (238-320)||(53012942-53013025)
chr3 (216-324)||(43304046-43304153)
chr3 (216-324)||(43306758-43306867)
chr3 (66-122)||(116668-116724)
chr3 (74-137)||(3670684-3670747)
chr3 (216-349)||(25857685-25857822)
chr3 (66-112)||(37180069-37180115)
chr3 (236-276)||(45168426-45168466)
chr3 (66-122)||(45234460-45234516)
chr3 (56-112)||(50614280-50614336)
chr3 (8-52)||(50805264-50805308)
chr3 (8-52)||(50870569-50870613)
chr3 (68-122)||(1430399-1430453)
chr3 (66-112)||(32942733-32942779)
chr3 (66-143)||(19831087-19831164)
chr3 (55-112)||(27867810-27867867)
chr3 (226-355)||(1151109-1151237)
chr3 (203-288)||(39913350-39913436)
chr3 (74-112)||(117937-117975)
chr3 (66-112)||(19669441-19669487)
chr3 (74-112)||(37178691-37178729)
chr3 (74-112)||(41786579-41786617)
chr3 (74-112)||(54185354-54185392)
chr3 (203-350)||(1697061-1697205)
chr3 (203-321)||(33620096-33620213)
chr3 (56-112)||(54185829-54185885)
chr3 (69-112)||(41928364-41928407)
chr3 (66-125)||(44555111-44555170)
chr3 (66-112)||(8576432-8576478)
chr3 (66-112)||(44558071-44558117)
chr3 (74-143)||(52700892-52700961)
chr3 (56-112)||(32944111-32944167)
chr3 (66-122)||(45235839-45235895)
[»] chr5 (27 HSPs)
chr5 (232-324)||(40778872-40778964)
chr5 (203-355)||(19677186-19677337)
chr5 (232-324)||(21849051-21849149)
chr5 (66-155)||(23317997-23318086)
chr5 (203-322)||(19497363-19497480)
chr5 (66-125)||(26864976-26865035)
chr5 (66-156)||(41140081-41140171)
chr5 (226-347)||(7775324-7775442)
chr5 (237-348)||(35160790-35160899)
chr5 (66-112)||(8218504-8218550)
chr5 (230-352)||(15385013-15385133)
chr5 (66-112)||(41138771-41138817)
chr5 (66-122)||(13921147-13921203)
chr5 (66-122)||(18951138-18951194)
chr5 (66-122)||(26866172-26866228)
chr5 (56-112)||(43439984-43440040)
chr5 (66-103)||(19116903-19116940)
chr5 (74-119)||(23312710-23312755)
chr5 (75-111)||(20898500-20898536)
chr5 (74-125)||(34527593-34527643)
chr5 (69-143)||(37812010-37812084)
chr5 (74-112)||(38691741-38691779)
chr5 (56-102)||(43441375-43441421)
chr5 (75-156)||(38693899-38693980)
chr5 (71-112)||(42258414-42258455)
chr5 (78-122)||(8217273-8217316)
chr5 (74-102)||(34526775-34526803)
[»] scaffold0251 (1 HSPs)
scaffold0251 (226-354)||(8212-8339)
[»] scaffold0110 (2 HSPs)
scaffold0110 (237-325)||(45347-45435)
scaffold0110 (232-322)||(46792-46882)
[»] scaffold0651 (1 HSPs)
scaffold0651 (66-112)||(5565-5611)
[»] scaffold0411 (1 HSPs)
scaffold0411 (8-52)||(11417-11461)
[»] scaffold0003 (2 HSPs)
scaffold0003 (73-122)||(240493-240542)
scaffold0003 (66-122)||(239252-239308)
[»] scaffold0097 (2 HSPs)
scaffold0097 (56-112)||(25554-25610)
scaffold0097 (66-112)||(23379-23425)
[»] scaffold0093 (1 HSPs)
scaffold0093 (66-122)||(49250-49306)
[»] scaffold0287 (1 HSPs)
scaffold0287 (74-125)||(214-263)
[»] scaffold0148 (1 HSPs)
scaffold0148 (56-122)||(38874-38940)
[»] scaffold0005 (1 HSPs)
scaffold0005 (77-143)||(282668-282734)
[»] scaffold0385 (1 HSPs)
scaffold0385 (74-103)||(10463-10492)


Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-103; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 57 - 339
Target Start/End: Complemental strand, 13086488 - 13086206
Alignment:
Q  57 ttttaaaccttagtccttacttaaattttattaaatttttggtccccaacgtttttggccgttagcgaatttggtccctaccgtcaattgttgatgattg 156  Q
    |||| ||| |||||||  ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13086488 ttttcaacattagtcccaacttaaattttattaaatttttggtcctccacgtttttggccgttagcgaatttggtccctaccgtcaattgttgatgattg 13086389  T
Q  157 ggttaacggaggcaaaaagctaagtttaaacaaataaggcgtaaagtttaaacagaacattatgcagcataagagacacttttttattcaataaaattat 256  Q
    ||||||| |||| ||| | ||||||||||||||||||||| |||||||||||||||||||||||| || |||| | |||||||| |||||||||||||||    
T  13086388 ggttaacagagggaaacaactaagtttaaacaaataaggcataaagtttaaacagaacattatgcggcctaaggggcactttttaattcaataaaattat 13086289  T
Q  257 tcgagattttctctcaattttgatggattccgaaaacccttattttgataggtttgtcgcttgcaacctgtcagtttatcttt 339  Q
    ||||||||||||||||||| | |||||||| |||||| |||||||||||||||||||||||| |||||| ||| |||||||||    
T  13086288 tcgagattttctctcaattctaatggattctgaaaactcttattttgataggtttgtcgcttacaacctatcaatttatcttt 13086206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 203 - 363
Target Start/End: Complemental strand, 13085299 - 13085139
Alignment:
Q  203 tttaaacagaacattatgcagcataagagacacttttttattcaataaaattattcgagattttctctcaattttgatggattccgaaaacccttatttt 302  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  13085299 tttaaacagaacattatgcagcctaagagacacttttttattcaataaaattattcgagattttctctcaattttggtggattccgaaaacccttatttt 13085200  T
Q  303 gataggtttgtcgcttgcaacctgtcagtttatcttttaggtttagcgcttgcgaactctt 363  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13085199 gataggtttgtcgcttgcaacctgtcagtttatcttttaggtttagcgcttgcgaactctt 13085139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 238 - 349
Target Start/End: Original strand, 22716574 - 22716686
Alignment:
Q  238 ttttattcaataaaattattcgaga-ttttctctcaattttgatggattccgaaaacccttattttgataggtttgtcgcttgcaacctgtcagtttatc 336  Q
    ||||||||| ||| | ||||||||| ||||||||||||| || ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||     
T  22716574 ttttattcattaataatattcgagacttttctctcaattctggtggattccggaaaccctttttttgataggtttgtcgcttgcaacctgtcagtttata 22716673  T
Q  337 ttttaggtttagc 349  Q
    |||||||||||||    
T  22716674 ttttaggtttagc 22716686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 238 - 349
Target Start/End: Complemental strand, 22988643 - 22988531
Alignment:
Q  238 ttttattcaataaaattattcgaga-ttttctctcaattttgatggattccgaaaacccttattttgataggtttgtcgcttgcaacctgtcagtttatc 336  Q
    ||||||||| ||| | ||||||||| ||||||||||||| || ||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||    
T  22988643 ttttattcattaataatattcgagacttttctctcaattctggtggattccggaaacccttttttcgataggtttgtcgcttgcaacctgtcagtttatc 22988544  T
Q  337 ttttaggtttagc 349  Q
    |||||| ||||||    
T  22988543 ttttagatttagc 22988531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 234 - 324
Target Start/End: Complemental strand, 6659506 - 6659416
Alignment:
Q  234 acttttttattcaataaaattattcgagattttctctcaattttgatggattccgaaaacccttattttgataggtttgtcgcttgcaacc 324  Q
    ||||||| ||||| ||||| |||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||    
T  6659506 actttttgattcactaaaactattcgagattttctctcaattctggtggattccggaaacccttattttgataggtttgtcgcttgcaacc 6659416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 234 - 355
Target Start/End: Original strand, 9596854 - 9596975
Alignment:
Q  234 acttttttattcaataaaattattcgaga-ttttctctcaattttgatggattccgaaaacccttattttgataggtttgtcgcttgcaacctgtcagtt 332  Q
    ||||||| ||||||||| | |||| |||| ||||||||||||| || ||||||  | |||||||||||| ||||||||| ||| ||||||||||||  ||    
T  9596854 actttttcattcaataagaatatttgagacttttctctcaattctggtggattatggaaacccttattt-gataggtttatcgtttgcaacctgtctttt 9596952  T
Q  333 tatcttttaggtttagcgcttgc 355  Q
    |||||||||||||||||||||||    
T  9596953 tatcttttaggtttagcgcttgc 9596975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 226 - 355
Target Start/End: Original strand, 54239513 - 54239640
Alignment:
Q  226 taagagacacttttttattcaataaaattattcgagattttctctcaattttgatggattccgaaaacccttattttgataggtttgtcgcttgcaacct 325  Q
    ||||| ||| ||||| | ||||||||||||| |||||  || ||||||||||| ||||||||||||||||||| ||||||||||||||| |||| ||| |    
T  54239513 taagatacagtttttcaatcaataaaattat-cgagaacttttctcaattttggtggattccgaaaaccctta-tttgataggtttgtcccttgtaactt 54239610  T
Q  326 gtcagtttatcttttaggtttagcgcttgc 355  Q
    ||| ||||| || |||||||||||| ||||    
T  54239611 gtctgtttacctcttaggtttagcgtttgc 54239640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 203 - 335
Target Start/End: Complemental strand, 2053214 - 2053083
Alignment:
Q  203 tttaaacagaacattatgcagcataagagacacttttttattcaataaaattattcgaga-ttttctctcaattttgatggattccgaaaacccttattt 301  Q
    |||||||| ||| ||||||||| ||||||| |||| || ||||||||||||||||||||| ||||  ||||||| |  |||||| || ||||||||| ||    
T  2053214 tttaaacataac-ttatgcagcctaagagagacttattcattcaataaaattattcgagactttttcctcaattctagtggatttcggaaaccctta-tt 2053117  T
Q  302 tgataggtttgtcgcttgcaacctgtcagtttat 335  Q
    |||||| ||||||||||||||| |||| ||||||    
T  2053116 tgatagatttgtcgcttgcaacttgtctgtttat 2053083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 263 - 355
Target Start/End: Complemental strand, 19684880 - 19684789
Alignment:
Q  263 ttttctctcaattttgatggattccgaaaacccttattttgataggtttgtcgcttgcaacctgtcagtttatcttttaggtttagcgcttgc 355  Q
    ||||||||||||| |  || |||| | |||||||| ||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  19684880 ttttctctcaattctattgaattctggaaacccttgttt-gataggtttgtcgcttgcaaactgtctgtttatcttttaggtttagcgcttgc 19684789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 216 - 335
Target Start/End: Original strand, 22691205 - 22691325
Alignment:
Q  216 ttatgcagcataagagacacttttttattcaataaaattattcgaga-ttttctctcaattttgatggattccgaaaacccttattttgataggtttgtc 314  Q
    ||||| ||| |||||| |||  ||||||||| ||| | ||||| ||| ||||||||||||| || ||||||||| |||||||||||| ||||||||||||    
T  22691205 ttatgtagcctaagaggcacacttttattcattaataatattcaagacttttctctcaattctggtggattccggaaacccttatttcgataggtttgtc 22691304  T
Q  315 gcttgcaacctgtcagtttat 335  Q
    ||||||||  ||||| |||||    
T  22691305 gcttgcaatgtgtcaatttat 22691325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 203 - 349
Target Start/End: Complemental strand, 38223233 - 38223089
Alignment:
Q  203 tttaaacagaacattatgcagcataagagacactttttt-attcaataaaattattcgagattttctctcaattttgatggattccgaaaacccttattt 301  Q
    |||||||| ||| ||||||| | |||||||||||||||| ||||||||||| |  |||||| ||| |||||||| |  ||||||| | ||||||||||||    
T  38223233 tttaaacataac-ttatgcaacctaagagacacttttttcattcaataaaaattatcgagacttt-tctcaattctagtggattctgtaaacccttattt 38223136  T
Q  302 tgataggtttgtcgcttgcaacctgtcagtttatcttttaggtttagc 349  Q
     ||||||||||||| ||||| ||| ||  |||||||||||||||||||    
T  38223135 -gataggtttgtcgtttgcagcctatctatttatcttttaggtttagc 38223089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 56 - 122
Target Start/End: Original strand, 44208610 - 44208676
Alignment:
Q  56 gttttaaaccttagtccttacttaaattttattaaatttttggtccccaacgtttttggccgttagc 122  Q
    ||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||  ||||||||    
T  44208610 gttttcaacattagtccctacttaaattttattaaatttttggtccccaacgtttttttccgttagc 44208676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 203 - 320
Target Start/End: Original strand, 4053030 - 4053145
Alignment:
Q  203 tttaaacagaacattatgcagcataagagacacttttttattcaataaaattattcgaga-ttttctctcaattttgatggattccgaaaacccttattt 301  Q
    |||||||| ||| ||||||| | |||||||| |||||  ||||||||||| ||||||||| ||||||||||||| || |||||| |||||| |||||  |    
T  4053030 tttaaacaaaac-ttatgcaacctaagagactcttttc-attcaataaaaatattcgagacttttctctcaattatggtggatttcgaaaatcctta-ct 4053126  T
Q  302 tgataggtttgtcgcttgc 320  Q
    |||||||||||||||||||    
T  4053127 tgataggtttgtcgcttgc 4053145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 112
Target Start/End: Complemental strand, 31318105 - 31318059
Alignment:
Q  66 ttagtccttacttaaattttattaaatttttggtccccaacgttttt 112  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||    
T  31318105 ttagtccctacttaaattttattaaatttttggtccccaacgttttt 31318059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 56 - 125
Target Start/End: Original strand, 53568888 - 53568957
Alignment:
Q  56 gttttaaaccttagtccttacttaaattttattaaatttttggtccccaacgtttttggccgttagcgaa 125  Q
    ||||| ||| ||| || |||||||||||||||||||||||||||||||||| |||||  |||||||||||    
T  53568888 gttttcaacattaatctttacttaaattttattaaatttttggtccccaacattttttcccgttagcgaa 53568957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 74 - 122
Target Start/End: Original strand, 33688428 - 33688476
Alignment:
Q  74 tacttaaattttattaaatttttggtccccaacgtttttggccgttagc 122  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||    
T  33688428 tacttaaattttattaaatttttggtccccaacgtttttttccgttagc 33688476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 56 - 112
Target Start/End: Complemental strand, 44210044 - 44209988
Alignment:
Q  56 gttttaaaccttagtccttacttaaattttattaaatttttggtccccaacgttttt 112  Q
    ||||| ||| |||||| ||||||||||||||||||||||||| ||||||||||||||    
T  44210044 gtttttaacattagtctttacttaaattttattaaatttttgatccccaacgttttt 44209988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 57 - 112
Target Start/End: Original strand, 35054920 - 35054975
Alignment:
Q  57 ttttaaaccttagtccttacttaaattttattaaatttttggtccccaacgttttt 112  Q
    |||| ||| ||||| | |||||||||||||||||||||||||||||||||||||||    
T  35054920 ttttcaacattagttcctacttaaattttattaaatttttggtccccaacgttttt 35054975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 66 - 112
Target Start/End: Complemental strand, 10322868 - 10322822
Alignment:
Q  66 ttagtccttacttaaattttattaaatttttggtccccaacgttttt 112  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||    
T  10322868 ttagtccctacttaaattttattaaatttttggtccccaatgttttt 10322822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 66 - 156
Target Start/End: Complemental strand, 25423234 - 25423145
Alignment:
Q  66 ttagtccttacttaaattttattaaatttttggtccccaacgtttttggccgttagcgaatttggtccctaccgtcaattgttgatgattg 156  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||  |||||||| || | |||||   | || |||||||||||||||    
T  25423234 ttagtccctacttaaattttattaaatttttggt-cccaacgtttttttccgttagcaaaataggtcctcgctgttaattgttgatgattg 25423145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 56 - 122
Target Start/End: Complemental strand, 35061375 - 35061309
Alignment:
Q  56 gttttaaaccttagtccttacttaaattttattaaatttttggtccccaacgtttttggccgttagc 122  Q
    ||||| ||| ||||||| |||||||||||||||||||||||| |||| |||||||||  ||||||||    
T  35061375 gttttcaacattagtccctacttaaattttattaaatttttgatcccaaacgtttttttccgttagc 35061309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 122
Target Start/End: Original strand, 31470697 - 31470763
Alignment:
Q  56 gttttaaaccttagtccttacttaaattttattaaatttttggtccccaacgtttttggccgttagc 122  Q
    ||||| ||| ||||||| ||||||||||||||||||||||||||| || || |||||  ||||||||    
T  31470697 gttttcaacattagtccctacttaaattttattaaatttttggtctccgacatttttttccgttagc 31470763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 56 - 125
Target Start/End: Original strand, 53570742 - 53570811
Alignment:
Q  56 gttttaaaccttagtccttacttaaattttattaaatttttggtccccaacgtttttggccgttagcgaa 125  Q
    ||||| ||| ||||||| ||||||||||||||||||||| || |||||| | |||||  |||||||||||    
T  53570742 gtttttaacattagtccatacttaaattttattaaatttatgttccccatcatttttttccgttagcgaa 53570811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 112
Target Start/End: Original strand, 25421811 - 25421855
Alignment:
Q  68 agtccttacttaaattttattaaatttttggtccccaacgttttt 112  Q
    ||||||||||||||||||||||||||| |  ||||||||||||||    
T  25421811 agtccttacttaaattttattaaatttattatccccaacgttttt 25421855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 122
Target Start/End: Complemental strand, 37329948 - 37329892
Alignment:
Q  66 ttagtccttacttaaattttattaaatttttggtccccaacgtttttggccgttagc 122  Q
    ||||||| ||| || ||||| ||||||||||||||||||||||||||  ||||||||    
T  37329948 ttagtccctacatacattttgttaaatttttggtccccaacgtttttttccgttagc 37329892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 66 - 125
Target Start/End: Original strand, 15562674 - 15562732
Alignment:
Q  66 ttagtccttacttaaattttattaaatttttggtccccaacgtttttggccgttagcgaa 125  Q
    ||||||| ||||||||||| ||| |||||||||||||||||||||||  | |||||||||    
T  15562674 ttagtccctacttaaattt-attgaatttttggtccccaacgtttttttctgttagcgaa 15562732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 74 - 145
Target Start/End: Complemental strand, 40171441 - 40171370
Alignment:
Q  74 tacttaaattttattaaatttttggtccccaacgtttttggccgttagcgaatttggtccctaccgtcaatt 145  Q
    ||||||||||||||||||||||| ||||||||  |||||| | ||||| | ||||||| |||  ||||||||    
T  40171441 tacttaaattttattaaattttttgtccccaatatttttgtctgttagtgtatttggttcctgtcgtcaatt 40171370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 66 - 113
Target Start/End: Complemental strand, 45046764 - 45046718
Alignment:
Q  66 ttagtccttacttaaattttattaaatttttggtccccaacgtttttg 113  Q
    ||||||| ||||||||||||||||||||||||||| || |||||||||    
T  45046764 ttagtccctacttaaattttattaaatttttggtctcc-acgtttttg 45046718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 352
Target Start/End: Original strand, 2880169 - 2880221
Alignment:
Q  299 ttttgataggtttgtcgcttgcaacctgtcagtttatcttttaggtttagcgct 352  Q
    |||||| |||||||| ||||||||| |||  |||||||||||||||||||||||    
T  2880169 ttttgacaggtttgt-gcttgcaacttgtttgtttatcttttaggtttagcgct 2880221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 156
Target Start/End: Complemental strand, 11671164 - 11671095
Alignment:
Q  87 ttaaatttttggtccccaacgtttttggccgttagcgaatttggtccctaccgtcaattgttgatgattg 156  Q
    |||||||||||||||||||| |||||  ||||||||||| | |||||   | || |||||||||||||||    
T  11671164 ttaaatttttggtccccaacatttttttccgttagcgaaataggtcctcgctgttaattgttgatgattg 11671095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 122
Target Start/End: Original strand, 11669865 - 11669921
Alignment:
Q  66 ttagtccttacttaaattttattaaatttttggtccccaacgtttttggccgttagc 122  Q
    ||||||| || |||||||||||||||| |||||||| | ||||||||  ||||||||    
T  11669865 ttagtccctatttaaattttattaaatatttggtcctcgacgtttttttccgttagc 11669921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 112
Target Start/End: Complemental strand, 53572086 - 53572030
Alignment:
Q  56 gttttaaaccttagtccttacttaaattttattaaatttttggtccccaacgttttt 112  Q
    ||||| ||| ||||||  |||||||||||||||||||||||| ||||| || |||||    
T  53572086 gtttttaacattagtctctacttaaattttattaaatttttgatccccgacattttt 53572030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 113; Significance: 4e-57; HSPs: 48)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 203 - 355
Target Start/End: Complemental strand, 18180890 - 18180738
Alignment:
Q  203 tttaaacagaacattatgcagcataagagacacttttttattcaataaaattattcgagattttctctcaattttgatggattccgaaaacccttatttt 302  Q
    |||||||||||||||||| ||| |||||| |||||||| |||||||||||||||||||||||||||||||||| || ||||||| | |||||||||||||    
T  18180890 tttaaacagaacattatgtagcctaagaggcactttttgattcaataaaattattcgagattttctctcaattctggtggattctggaaacccttatttt 18180791  T
Q  303 gataggtttgtcgcttgcaacctgtcagtttatcttttaggtttagcgcttgc 355  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  18180790 gataggtttgtcgcttgcaacatgtcagtttatcctttaggtttagcgcttgc 18180738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 66 - 172
Target Start/End: Original strand, 42816061 - 42816167
Alignment:
Q  66 ttagtccttacttaaattttattaaatttttggtccccaacgtttttggccgttagcgaatttggtccctaccgtcaattgttgatgattgggttaacgg 165  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||| ||||||||| |||||    
T  42816061 ttagtccctacttaaattttattaaatttttggtccccaacgtttttggtcgttagcgaatttggtccctaccatcaaatgttgctgattgggtcaacgg 42816160  T
Q  166 aggcaaa 172  Q
    | |||||    
T  42816161 aagcaaa 42816167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 216 - 324
Target Start/End: Complemental strand, 22922046 - 22921936
Alignment:
Q  216 ttatgcagcataagagacact--tttttattcaataaaattattcgagattttctctcaattttgatggattccgaaaacccttattttgataggtttgt 313  Q
    ||||||||| ||||||||||   |||| |||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||    
T  22922046 ttatgcagcctaagagacacaccttttgattcaataaaattattcgagattttctctcaattctggtggattccggaaacccttattttgataggtttgt 22921947  T
Q  314 cgcttgcaacc 324  Q
    |||||||||||    
T  22921946 cgcttgcaacc 22921936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 216 - 324
Target Start/End: Complemental strand, 22926842 - 22926734
Alignment:
Q  216 ttatgcagcataagagacacttttttattcaataaaattattcgagattttctctcaattttgatggattccgaaaacccttattttgataggtttgtcg 315  Q
    ||||||||| ||||||||||  ||| ||||||||||| |||||||||||||||||||||| || ||||||||  ||||||||||||||||||||||||||    
T  22926842 ttatgcagcctaagagacacaatttaattcaataaaaatattcgagattttctctcaattctggtggattccagaaacccttattttgataggtttgtcg 22926743  T
Q  316 cttgcaacc 324  Q
    |||||||||    
T  22926742 cttgcaacc 22926734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 232 - 324
Target Start/End: Complemental strand, 42891842 - 42891750
Alignment:
Q  232 acacttttttattcaataaaattattcgagattttctctcaattttgatggattccgaaaacccttattttgataggtttgtcgcttgcaacc 324  Q
    ||||||||| |||||||||||||||| ||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||    
T  42891842 acactttttgattcaataaaattatttgagattttctctcaattctggtggattccggaaacccttattttgataggtttgtcgcttgcaacc 42891750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 236 - 324
Target Start/End: Complemental strand, 22512220 - 22512132
Alignment:
Q  236 ttttttattcaataaaattattcgagattttctctcaattttgatggattccgaaaacccttattttgataggtttgtcgcttgcaacc 324  Q
    |||||||||||||||||||||||||||||||||||||||| || |||||| || ||||||||||||||||||||||||| |||||||||    
T  22512220 ttttttattcaataaaattattcgagattttctctcaattctggtggatttcggaaacccttattttgataggtttgtcacttgcaacc 22512132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 241 - 324
Target Start/End: Complemental strand, 22520968 - 22520885
Alignment:
Q  241 tattcaataaaattattcgagattttctctcaattttgatggattccgaaaacccttattttgataggtttgtcgcttgcaacc 324  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||| |||||||||    
T  22520968 tattcaataaaattattcgagattttctctcaattctggtggattccggaaacccttattttgataggtttgtcacttgcaacc 22520885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 226 - 324
Target Start/End: Original strand, 6845241 - 6845339
Alignment:
Q  226 taagagacacttttttattcaataaaattattcgagattttctctcaa-ttttgatggattccgaaaacccttattttgataggtttgtcgcttgcaacc 324  Q
    ||||||||||||||| ||||| ||| | |||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  6845241 taagagacactttttgattcattaataatattcgagattttctctcaatttttggtggattccg-aaacccttattttgataggtttgtcgcttgcaacc 6845339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 56 - 163
Target Start/End: Original strand, 39308311 - 39308418
Alignment:
Q  56 gttttaaaccttagtccttacttaaattttattaaatttttggtccccaacgtttttggccgttagcgaatttggtccctaccgtcaattgttgatgatt 155  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||  ||||||||| |||| ||| || ||||||||| ||| |||||    
T  39308311 gttttcaaccttagtccctacttaaattttattaaatttttggtccccaacgtttttatccgttagcgtatttagtctctgccgtcaatttttgctgatt 39308410  T
Q  156 gggttaac 163  Q
    ||| ||||    
T  39308411 gggctaac 39308418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 232 - 321
Target Start/End: Original strand, 42890309 - 42890392
Alignment:
Q  232 acacttttttattcaataaaattattcgagattttctctcaattttgatggattccgaaaacccttattttgataggtttgtcgcttgca 321  Q
    ||||||||| |||||||||||||||||||||||||||||      || ||||||||| ||||||||||||||||||||||||||||||||    
T  42890309 acactttttgattcaataaaattattcgagattttctct------tggtggattccggaaacccttattttgataggtttgtcgcttgca 42890392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 216 - 324
Target Start/End: Original strand, 23573477 - 23573586
Alignment:
Q  216 ttatgcagcataagagacacttttttattcaataaaattattcgaga-ttttctctcaattttgatggattccgaaaacccttattttgataggtttgtc 314  Q
    ||||| ||| |||||| |||  ||||||||| ||| | ||||||||| |||||||||||||| | |||||| || |||||||||||||||||||||||||    
T  23573477 ttatgtagcctaagaggcacacttttattcattaataatattcgagacttttctctcaatttaggtggatttcggaaacccttattttgataggtttgtc 23573576  T
Q  315 gcttgcaacc 324  Q
    ||||||||||    
T  23573577 gcttgcaacc 23573586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 234 - 355
Target Start/End: Complemental strand, 4360982 - 4360860
Alignment:
Q  234 acttttttattcaataaaattattcgaga--ttttctctcaattttgatggattccgaaaacccttattttgataggtttgtcgcttgcaacctgtcagt 331  Q
    ||||||| ||||||||||| |||||||||  |||| ||||||||| |||||||||   ||||| ||||||  ||||||||||||||||||||||||   |    
T  4360982 actttttcattcaataaaaatattcgagactttttttctcaatttcgatggattctagaaacctttattta-ataggtttgtcgcttgcaacctgtgtat 4360884  T
Q  332 ttatcttttaggtttagcgcttgc 355  Q
    |||||||||| ||||| |||||||    
T  4360883 ttatcttttaagtttaacgcttgc 4360860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 66 - 125
Target Start/End: Original strand, 13322929 - 13322988
Alignment:
Q  66 ttagtccttacttaaattttattaaatttttggtccccaacgtttttggccgttagcgaa 125  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  13322929 ttagtccctacttaaattttattaaatttttggtccccaacgtttttttccgttagcgaa 13322988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 74 - 161
Target Start/End: Complemental strand, 39310661 - 39310574
Alignment:
Q  74 tacttaaattttattaaatttttggtccccaacgtttttggccgttagcgaatttggtccctaccgtcaattgttgatgattgggtta 161  Q
    ||||||||||||||| |||||||||||||||||||||||| | ||||  | ||||||||||| ||||||| | ||| |||||||||||    
T  39310661 tacttaaattttatttaatttttggtccccaacgtttttgtcagttaatgtatttggtccctgccgtcaaattttgctgattgggtta 39310574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 66 - 125
Target Start/End: Complemental strand, 39338069 - 39338010
Alignment:
Q  66 ttagtccttacttaaattttattaaatttttggtccccaacgtttttggccgttagcgaa 125  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  39338069 ttagtccctacttaaattttattaaatttttggtccccaacgtttttttccgttagcgaa 39338010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 67 - 125
Target Start/End: Original strand, 1692632 - 1692690
Alignment:
Q  67 tagtccttacttaaattttattaaatttttggtccccaacgtttttggccgttagcgaa 125  Q
    |||||| |||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  1692632 tagtccctacttaaattttattaaatttttggtccccaacgtttttttccgttagcgaa 1692690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 232 - 324
Target Start/End: Original strand, 37189778 - 37189869
Alignment:
Q  232 acacttttttattcaataaaattattcgagattttctctcaattt-tgatggattccgaaaacccttattttgataggtttgtcgcttgcaacc 324  Q
    ||||||||||||||| ||| | ||||||||||||| ||||||||| || |||||| || || ||||||||||||||||||||||||||||||||    
T  37189778 acacttttttattcattaataatattcgagatttt-tctcaatttctggtggatttcggaa-cccttattttgataggtttgtcgcttgcaacc 37189869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 226 - 342
Target Start/End: Complemental strand, 38082271 - 38082155
Alignment:
Q  226 taagagacactttttt-attcaataaaattattcgagattttctctcaattttgatggattccgaaaacccttattttgataggtttgtcgcttgcaacc 324  Q
    |||||| ||||||||| ||||||||||| |  ||||||  || |||||||| |||| ||||||  |||||||||||| |||| |||||||||||||||||    
T  38082271 taagaggcacttttttcattcaataaaaattatcgagaacttttctcaattctgatagattcctgaaacccttattt-gatatgtttgtcgcttgcaacc 38082173  T
Q  325 tgtcagtttatcttttag 342  Q
    | || |||||||||||||    
T  38082172 tctctgtttatcttttag 38082155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 275 - 355
Target Start/End: Original strand, 12310816 - 12310895
Alignment:
Q  275 tttgatggattccgaaaacccttattttgataggtttgtcgcttgcaacctgtcagtttatcttttaggtttagcgcttgc 355  Q
    |||| |||| ||||||||||||| |||| ||||||||||||||  |||| |||| ||||||||||||||||||||||||||    
T  12310816 tttggtggactccgaaaacccttttttt-ataggtttgtcgctcacaacttgtctgtttatcttttaggtttagcgcttgc 12310895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 254 - 325
Target Start/End: Original strand, 23570516 - 23570588
Alignment:
Q  254 tattcgaga-ttttctctcaattttgatggattccgaaaacccttattttgataggtttgtcgcttgcaacct 325  Q
    ||||||||| ||||||||||||| || || |||| | ||||||||||||||||||||||||||||||||||||    
T  23570516 tattcgagacttttctctcaattctggtgcattctggaaacccttattttgataggtttgtcgcttgcaacct 23570588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 56 - 112
Target Start/End: Original strand, 37705869 - 37705925
Alignment:
Q  56 gttttaaaccttagtccttacttaaattttattaaatttttggtccccaacgttttt 112  Q
    ||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  37705869 gttttcaacattagtccctacttaaattttattaaatttttggtccccaacgttttt 37705925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 203 - 300
Target Start/End: Original strand, 26150572 - 26150669
Alignment:
Q  203 tttaaacagaacattatgcagcataagagacacttttttattcaataaaattattcgaga-ttttctctcaattttgatggattccgaaaacccttatt 300  Q
    |||||||| ||| ||||||||| |||||| |||||||| ||||||||||| ||||||||| ||||||||||||| || ||||||| | ||| |||||||    
T  26150572 tttaaacaaaac-ttatgcagcttaagaggcactttttcattcaataaaaatattcgagacttttctctcaattctggtggattctggaaatccttatt 26150669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 74 - 133
Target Start/End: Original strand, 14835072 - 14835130
Alignment:
Q  74 tacttaaattttattaaatttttggtccccaacgtttttggccgttagcgaatttggtcc 133  Q
    ||||||||||||| |||||||||||| |||||||||||| |||||||||||| |||||||    
T  14835072 tacttaaattttaataaatttttggttcccaacgttttt-gccgttagcgaaattggtcc 14835130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 121
Target Start/End: Complemental strand, 37707273 - 37707218
Alignment:
Q  66 ttagtccttacttaaattttattaaatttttggtccccaacgtttttggccgttag 121  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||  |||||||    
T  37707273 ttagtccctacttaaattttattaaatttttgatccccaacgtttttttccgttag 37707218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 228 - 354
Target Start/End: Original strand, 9295242 - 9295366
Alignment:
Q  228 agagacacttttttattcaataaaattattcgagattttctctcaattttgatggattccgaaaacccttattttgataggtttgtcgcttgcaacctgt 327  Q
    ||||||| ||||  ||||||||||||||| |||||  || |||||||| || ||||||||  |||| | ||||| || || ||||||||||||||| |||    
T  9295242 agagacagttttacattcaataaaattat-cgagaacttttctcaattctggtggattccagaaactcatattt-gacagatttgtcgcttgcaacttgt 9295339  T
Q  328 cagtttatcttttaggtttagcgcttg 354  Q
    | |||||||| |||| |||||||||||    
T  9295340 ctgtttatctcttagatttagcgcttg 9295366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 66 - 112
Target Start/End: Original strand, 24451223 - 24451269
Alignment:
Q  66 ttagtccttacttaaattttattaaatttttggtccccaacgttttt 112  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||    
T  24451223 ttagtccctacttaaattttattaaatttttgatccccaacgttttt 24451269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 66 - 140
Target Start/End: Complemental strand, 42817257 - 42817184
Alignment:
Q  66 ttagtccttacttaaattttattaaatttttggtccccaacgtttttggccgttagcgaatttggtccctaccgt 140  Q
    ||||||| |||||| ||||||| |||||||| |||||||| ||||||||| || |||||||||||||||| ||||    
T  42817257 ttagtccctacttatattttatgaaattttttgtccccaatgtttttggc-gtcagcgaatttggtccctgccgt 42817184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 122
Target Start/End: Original strand, 41280237 - 41280286
Alignment:
Q  73 ttacttaaattttattaaatttttggtccccaacgtttttggccgttagc 122  Q
    |||||||||||||||||||||||||||| |||||||||||  ||||||||    
T  41280237 ttacttaaattttattaaatttttggtctccaacgtttttttccgttagc 41280286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 66 - 122
Target Start/End: Complemental strand, 13324101 - 13324045
Alignment:
Q  66 ttagtccttacttaaattttattaaatttttggtccccaacgtttttggccgttagc 122  Q
    ||||||| |||||||||||||||||||||||| ||||||| ||||||  ||||||||    
T  13324101 ttagtccctacttaaattttattaaatttttgatccccaatgtttttttccgttagc 13324045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 66 - 122
Target Start/End: Complemental strand, 21136491 - 21136435
Alignment:
Q  66 ttagtccttacttaaattttattaaatttttggtccccaacgtttttggccgttagc 122  Q
    ||||||| |||||||||||||||||||||||||| || |||||||||  ||||||||    
T  21136491 ttagtccctacttaaattttattaaatttttggttcctaacgtttttttccgttagc 21136435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 66 - 122
Target Start/End: Complemental strand, 24452650 - 24452594
Alignment:
Q  66 ttagtccttacttaaattttattaaatttttggtccccaacgtttttggccgttagc 122  Q
    ||||||| ||||||||||||||||| |||||||||||| ||||||||  ||||||||    
T  24452650 ttagtccctacttaaattttattaattttttggtccccgacgtttttttccgttagc 24452594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 268 - 355
Target Start/End: Original strand, 2262692 - 2262778
Alignment:
Q  268 tctcaattttgatggattccgaaaacccttattttgataggtttgtcgcttgcaacctgtcagtttatcttttaggtttagcgcttgc 355  Q
    ||||||||||  | ||||||||||||||||||||| | | |||||||||||||||| |||  |||||||||||| ||||  |||||||    
T  2262692 tctcaattttagtagattccgaaaacccttatttt-acaagtttgtcgcttgcaacttgtttgtttatcttttaagttttacgcttgc 2262778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 112
Target Start/End: Complemental strand, 16478654 - 16478608
Alignment:
Q  66 ttagtccttacttaaattttattaaatttttggtccccaacgttttt 112  Q
    ||||||| |||||||||||||||||||| |||||| |||||||||||    
T  16478654 ttagtccctacttaaattttattaaattattggtctccaacgttttt 16478608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 122
Target Start/End: Original strand, 21135055 - 21135121
Alignment:
Q  56 gttttaaaccttagtccttacttaaattttattaaatttttggtccccaacgtttttggccgttagc 122  Q
    ||||| ||| |||||||  ||||||||||||||||||||||| |||||| |||||||  ||||||||    
T  21135055 gttttcaacattagtcccaacttaaattttattaaatttttgatccccatcgtttttttccgttagc 21135121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 112
Target Start/End: Complemental strand, 35864202 - 35864164
Alignment:
Q  74 tacttaaattttattaaatttttggtccccaacgttttt 112  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  35864202 tacttaaattttattaaatttttggtcgccaacgttttt 35864164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 112
Target Start/End: Complemental strand, 36063966 - 36063928
Alignment:
Q  74 tacttaaattttattaaatttttggtccccaacgttttt 112  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  36063966 tacttaaattttattaaatttttgatccccaacgttttt 36063928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 112
Target Start/End: Original strand, 45022019 - 45022053
Alignment:
Q  78 taaattttattaaatttttggtccccaacgttttt 112  Q
    |||||||||||||||||||||||||||||||||||    
T  45022019 taaattttattaaatttttggtccccaacgttttt 45022053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 350
Target Start/End: Original strand, 15081477 - 15081599
Alignment:
Q  226 taagagacacttttttattcaataaaattattcgagattttctctcaattttgatggattccgaaaacccttattttgataggtttgtcgcttgcaacct 325  Q
    |||||| || |||||  |||||||||||||| |||||  || |||||||| |  ||||||| | ||||| |||||| || |||||||||||||||||| |    
T  15081477 taagaggcagtttttccttcaataaaattat-cgagaacttttctcaattcttgtggattctggaaacctttattt-gacaggtttgtcgcttgcaactt 15081574  T
Q  326 gtcagtttatcttttaggtttagcg 350  Q
    ||  |||||||| ||| ||||||||    
T  15081575 gtgtgtttatctcttatgtttagcg 15081599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 122
Target Start/End: Original strand, 35862794 - 35862838
Alignment:
Q  78 taaattttattaaatttttggtccccaacgtttttggccgttagc 122  Q
    |||||||||||||||||||| ||||||||||||||  ||||||||    
T  35862794 taaattttattaaatttttgatccccaacgtttttttccgttagc 35862838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 40705498 - 40705542
Alignment:
Q  8 gtccacaattaggaattgattcgtcaaaaccatattaatttggtg 52  Q
    |||||||||||||||||||| | ||||||||||||| ||||||||    
T  40705498 gtccacaattaggaattgatccatcaaaaccatattgatttggtg 40705542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 112
Target Start/End: Original strand, 16472735 - 16472781
Alignment:
Q  66 ttagtccttacttaaattttattaaatttttggtccccaacgttttt 112  Q
    ||||||| ||||||||||||||||||||||||  |||||| ||||||    
T  16472735 ttagtccctacttaaattttattaaatttttgacccccaatgttttt 16472781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #42
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 112
Target Start/End: Original strand, 16477306 - 16477352
Alignment:
Q  66 ttagtccttacttaaattttattaaatttttggtccccaacgttttt 112  Q
    ||||||| ||||||||||||||||||||||||  |||||| ||||||    
T  16477306 ttagtccctacttaaattttattaaatttttgacccccaatgttttt 16477352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #43
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 112
Target Start/End: Original strand, 21575561 - 21575599
Alignment:
Q  74 tacttaaattttattaaatttttggtccccaacgttttt 112  Q
    |||||||||||||||||||||||| |||||||| |||||    
T  21575561 tacttaaattttattaaatttttgatccccaacattttt 21575599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #44
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 324
Target Start/End: Complemental strand, 22519466 - 22519432
Alignment:
Q  290 aaacccttattttgataggtttgtcgcttgcaacc 324  Q
    ||||||||||||||||||||||||| |||||||||    
T  22519466 aaacccttattttgataggtttgtcacttgcaacc 22519432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 355
Target Start/End: Complemental strand, 10456316 - 10456252
Alignment:
Q  290 aaacccttattttgataggtttgtcgcttgcaacctgtcagtttatcttttaggtttagcgcttgc 355  Q
    |||||||| |||||| |||||||||||||||||| | ||  |||||||||||| ||||| ||||||    
T  10456316 aaaccctt-ttttgacaggtttgtcgcttgcaacttatctatttatcttttagatttagagcttgc 10456252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 112
Target Start/End: Original strand, 36062536 - 36062593
Alignment:
Q  56 gttttaaaccttagtccttacttaaattttattaaatttttggt-ccccaacgttttt 112  Q
    ||||| ||| ||||||  || ||||||||||||||||||||||| |||||||||||||    
T  36062536 gttttcaacattagtctctatttaaattttattaaatttttggtcccccaacgttttt 36062593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #47
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 112
Target Start/End: Original strand, 35368922 - 35368978
Alignment:
Q  56 gttttaaaccttagtccttacttaaattttattaaatttttggtccccaacgttttt 112  Q
    ||||| ||| ||||| | |||||||||||||||||||||||  || |||||||||||    
T  35368922 gttttcaacattagtacctacttaaattttattaaattttttatctccaacgttttt 35368978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #48
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 122
Target Start/End: Original strand, 39336767 - 39336815
Alignment:
Q  74 tacttaaattttattaaatttttggtccccaacgtttttggccgttagc 122  Q
    |||||||||||||||||||||||||||| |  |||||||  ||||||||    
T  39336767 tacttaaattttattaaatttttggtcctcggcgtttttttccgttagc 39336815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 96; Significance: 5e-47; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 203 - 353
Target Start/End: Original strand, 8781395 - 8781544
Alignment:
Q  203 tttaaacagaacattatgcagcataagagacactttttt-attcaataaaattattcgagattttctctcaattttgatggattccgaaaacccttattt 301  Q
    |||||||||||| ||||||||| |||||| ||||||||| |||||||||||||||||||||||| ||||||||| || |||||| ||||| |||||||||    
T  8781395 tttaaacagaacgttatgcagcctaagaggcacttttttcattcaataaaattattcgagatttactctcaattctggtggatttcgaaa-cccttattt 8781493  T
Q  302 tgataggtttgtcgcttgcaacctgtcagtttatcttttaggtttagcgctt 353  Q
     |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  8781494 -gataggtttgtcgcttgcaacctgtctgtttatcttttaggtttagcgctt 8781544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 203 - 355
Target Start/End: Original strand, 22264317 - 22264468
Alignment:
Q  203 tttaaacagaacattatgcagcataagagacacttttttattcaataaaattattcgagattttctctcaattttgatggattccgaaaacccttatttt 302  Q
    ||||| || ||||||||||||| |||||| |||||||| ||||||||||||||||||||||||| |||||||| ||||||||||   ||||| ||| ||     
T  22264317 tttaagcataacattatgcagcctaagaggcactttttgattcaataaaattattcgagattttatctcaattctgatggattctagaaaccttta-ttc 22264415  T
Q  303 gataggtttgtcgcttgcaacctgtcagtttatcttttaggtttagcgcttgc 355  Q
    |||||||||||| |||||||||||||  ||||||| ||||||||| |||||||    
T  22264416 gataggtttgtctcttgcaacctgtctctttatctattaggtttaacgcttgc 22264468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 232 - 324
Target Start/End: Complemental strand, 27956332 - 27956240
Alignment:
Q  232 acacttttttattcaataaaattattcgagattttctctcaattttgatggattccgaaaacccttattttgataggtttgtcgcttgcaacc 324  Q
    ||||||||| |||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||| |||||||||||||||||||||    
T  27956332 acactttttgattcaataaaattattcgagattttctctcaattctggtggattccggaaacccttattttcataggtttgtcgcttgcaacc 27956240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 216 - 322
Target Start/End: Original strand, 2155861 - 2155968
Alignment:
Q  216 ttatgcagcataagagacacttttttattcaataaaattattcgaga-ttttctctcaattttgatggattccgaaaacccttattttgataggtttgtc 314  Q
    ||||||||| ||||||||||  ||||||||||||| | ||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2155861 ttatgcagcctaagagacacacttttattcaataataatattcaagacttttctctcaattctgatggattccgaaaacccttattttgataggtttgtc 2155960  T
Q  315 gcttgcaa 322  Q
    ||||||||    
T  2155961 gcttgcaa 2155968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 232 - 324
Target Start/End: Original strand, 33655538 - 33655631
Alignment:
Q  232 acacttttttattcaataaaattattcgagattttctctcaattt-tgatggattccgaaaacccttattttgataggtttgtcgcttgcaacc 324  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||| ||||||||    
T  33655538 acactttttcattcaataaaattattcgagattttctctcaatttctggtggattccggaaacccttattttgataggtttgtcgtttgcaacc 33655631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 232 - 324
Target Start/End: Complemental strand, 27952496 - 27952404
Alignment:
Q  232 acacttttttattcaataaaattattcgagattttctctcaattttgatggattccgaaaacccttattttgataggtttgtcgcttgcaacc 324  Q
    ||||||||| |||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||| | |||||||||||||||||||    
T  27952496 acactttttgattcaataaaattattcgagattttctctcaattctggtggattccggaaacccttattttcaaaggtttgtcgcttgcaacc 27952404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 226 - 350
Target Start/End: Complemental strand, 18725778 - 18725654
Alignment:
Q  226 taagagacacttttttattcaataaaattattcgaga-ttttctctcaattttgatggattccgaaaacccttattttgataggtttgtcgcttgcaacc 324  Q
    ||||||||||||||| |||||||||||||||| || | |||||||| ||||||  |||| |||  ||||| |||||| ||||||||||||||||||| ||    
T  18725778 taagagacactttttcattcaataaaattatttgaaacttttctcttaattttagtggaatccagaaacctttattt-gataggtttgtcgcttgcagcc 18725680  T
Q  325 tgtcagtttatcttttaggtttagcg 350  Q
    |||| |||||||||||| ||||||||    
T  18725679 tgtctgtttatcttttaagtttagcg 18725654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 263 - 355
Target Start/End: Complemental strand, 44675368 - 44675277
Alignment:
Q  263 ttttctctcaattttgatggattccgaaaacccttattttgataggtttgtcgcttgcaacctgtcagtttatcttttaggtttagcgcttgc 355  Q
    ||||||||||||| || |||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||| |||| ||| ||||    
T  44675368 ttttctctcaattctggtggattccgaaaacccttattt-gataggtatgtcgcttgcaacctgtctgtttatcttttatgtttggcgtttgc 44675277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 216 - 322
Target Start/End: Original strand, 2165817 - 2165924
Alignment:
Q  216 ttatgcagcataagagacacttttttattcaataaaattattcgaga-ttttctctcaattttgatggattccgaaaacccttattttgataggtttgtc 314  Q
    ||||||||| |||||||||| |||||||||| ||| | ||||||||| |||||||||||||||| ||||||| ||||||  ||||||||||| ||||||     
T  2165817 ttatgcagcctaagagacacatttttattcattaataatattcgagacttttctctcaattttggtggattctgaaaacatttattttgataagtttgtt 2165916  T
Q  315 gcttgcaa 322  Q
    ||||||||    
T  2165917 gcttgcaa 2165924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 234 - 322
Target Start/End: Original strand, 31634017 - 31634105
Alignment:
Q  234 acttttttattcaataaaattattcgagattttctctcaattt-tgatggattccgaaaacccttattttgataggtttgtcgcttgcaa 322  Q
    ||||||||||||| ||| | |||| |||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||    
T  31634017 acttttttattcattaataatatttgagattttctctcaatttctggtggattccgaaa-cccttattttgataggtttgtcgcttgcaa 31634105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 234 - 324
Target Start/End: Original strand, 31636250 - 31636340
Alignment:
Q  234 acttttttattcaataaaattattcgagattttctctcaattt-tgatggattccgaaaacccttattttgataggtttgtcgcttgcaacc 324  Q
    ||||||||||||| ||| | ||||| ||||||||||||||||| || ||||||||| || ||||||||||||||||||||||||||||||||    
T  31636250 acttttttattcattaataatattcaagattttctctcaatttctggtggattccggaa-cccttattttgataggtttgtcgcttgcaacc 31636340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 239 - 324
Target Start/End: Original strand, 22011353 - 22011439
Alignment:
Q  239 tttattcaataaaattattcgaga-ttttctctcaattttgatggattccgaaaacccttattttgataggtttgtcgcttgcaacc 324  Q
    |||||||| ||| | ||||||||| ||||||||||||| || ||||||||| ||||||||||||||||||||||||||||| |||||    
T  22011353 tttattcattaataatattcgagacttttctctcaattctggtggattccggaaacccttattttgataggtttgtcgcttccaacc 22011439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 237 - 355
Target Start/End: Original strand, 5841221 - 5841337
Alignment:
Q  237 tttttattcaataaaattattcgagattttctctcaattttgatggattccgaaaacccttattttgataggtttgtcgcttgcaacctgtcagtttatc 336  Q
    |||| ||||||||||||||| |||||  || |||||||| |  |||||||||||||||| | ||| || |||||||||||||||||| |||  |||||||    
T  5841221 ttttcattcaataaaattat-cgagaacttttctcaattcttgtggattccgaaaacccctgttt-gacaggtttgtcgcttgcaacttgtatgtttatc 5841318  T
Q  337 ttttaggtttagcgcttgc 355  Q
    |||||||||||||| ||||    
T  5841319 ttttaggtttagcgtttgc 5841337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 66 - 122
Target Start/End: Complemental strand, 20721098 - 20721042
Alignment:
Q  66 ttagtccttacttaaattttattaaatttttggtccccaacgtttttggccgttagc 122  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||  ||||||||    
T  20721098 ttagtccctacttaaattttattaaatttttggtccccaacgtttttttccgttagc 20721042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 66 - 122
Target Start/End: Complemental strand, 44494050 - 44493994
Alignment:
Q  66 ttagtccttacttaaattttattaaatttttggtccccaacgtttttggccgttagc 122  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||  ||||||||    
T  44494050 ttagtccctacttaaattttattaaatttttggtcctcaacgtttttttccgttagc 44493994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 74 - 112
Target Start/End: Original strand, 21439049 - 21439087
Alignment:
Q  74 tacttaaattttattaaatttttggtccccaacgttttt 112  Q
    |||||||||||||||||||||||||||||||||||||||    
T  21439049 tacttaaattttattaaatttttggtccccaacgttttt 21439087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 66 - 112
Target Start/End: Original strand, 42486797 - 42486843
Alignment:
Q  66 ttagtccttacttaaattttattaaatttttggtccccaacgttttt 112  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||    
T  42486797 ttagtccatacttaaattttattaaatttttggtccccaaagttttt 42486843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 74 - 112
Target Start/End: Original strand, 43931893 - 43931931
Alignment:
Q  74 tacttaaattttattaaatttttggtccccaacgttttt 112  Q
    |||||||||||||||||||||||||||||||||||||||    
T  43931893 tacttaaattttattaaatttttggtccccaacgttttt 43931931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 74 - 122
Target Start/End: Original strand, 20701004 - 20701052
Alignment:
Q  74 tacttaaattttattaaatttttggtccccaacgtttttggccgttagc 122  Q
    |||||||||||||||||||||||| ||||||||||||||  ||||||||    
T  20701004 tacttaaattttattaaatttttgatccccaacgtttttttccgttagc 20701052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 56 - 112
Target Start/End: Complemental strand, 20721781 - 20721725
Alignment:
Q  56 gttttaaaccttagtccttacttaaattttattaaatttttggtccccaacgttttt 112  Q
    ||||| ||| ||||||| |||||||||||||||||||||||||||||| | ||||||    
T  20721781 gttttcaacattagtccatacttaaattttattaaatttttggtccccgaagttttt 20721725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 66 - 122
Target Start/End: Original strand, 23787365 - 23787421
Alignment:
Q  66 ttagtccttacttaaattttattaaatttttggtccccaacgtttttggccgttagc 122  Q
    |||||||  ||||||||||||||||||||||||||||| ||||||||  ||||||||    
T  23787365 ttagtccccacttaaattttattaaatttttggtcccctacgtttttttccgttagc 23787421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 74 - 122
Target Start/End: Original strand, 33000724 - 33000772
Alignment:
Q  74 tacttaaattttattaaatttttggtccccaacgtttttggccgttagc 122  Q
    |||||||||||||||||||||||||||||||| ||||||  ||||||||    
T  33000724 tacttaaattttattaaatttttggtccccaatgtttttttccgttagc 33000772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 66 - 122
Target Start/End: Complemental strand, 33001412 - 33001356
Alignment:
Q  66 ttagtccttacttaaattttattaaatttttggtccccaacgtttttggccgttagc 122  Q
    ||||||| | |||||||||||||||||||||| ||||||||||||||  ||||||||    
T  33001412 ttagtccctgcttaaattttattaaatttttgatccccaacgtttttttccgttagc 33001356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 78 - 122
Target Start/End: Original strand, 38276099 - 38276143
Alignment:
Q  78 taaattttattaaatttttggtccccaacgtttttggccgttagc 122  Q
    |||||||||||||||||||||||||||||||||||  ||||||||    
T  38276099 taaattttattaaatttttggtccccaacgtttttttccgttagc 38276143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 112
Target Start/End: Original strand, 1373309 - 1373355
Alignment:
Q  66 ttagtccttacttaaattttattaaatttttggtccccaacgttttt 112  Q
    ||||||| ||| ||||||||||||||||||||||| |||||||||||    
T  1373309 ttagtccctacataaattttattaaatttttggtcaccaacgttttt 1373355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 112
Target Start/End: Complemental strand, 20719587 - 20719541
Alignment:
Q  66 ttagtccttacttaaattttattaaatttttggtccccaacgttttt 112  Q
    ||||||| |||||||||||||||| ||||||| ||||||||||||||    
T  20719587 ttagtccctacttaaattttattacatttttgatccccaacgttttt 20719541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 106
Target Start/End: Complemental strand, 42488228 - 42488178
Alignment:
Q  56 gttttaaaccttagtccttacttaaattttattaaatttttggtccccaac 106  Q
    ||||| ||| ||||| | |||||||||||||||||||||||||||||||||    
T  42488228 gttttcaacattagttcctacttaaattttattaaatttttggtccccaac 42488178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 112
Target Start/End: Complemental strand, 1373751 - 1373705
Alignment:
Q  66 ttagtccttacttaaattttattaaatttttggtccccaacgttttt 112  Q
    ||||||| ||||||||||||||||||||||| ||| |||| ||||||    
T  1373751 ttagtccctacttaaattttattaaattttttgtcaccaatgttttt 1373705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 112
Target Start/End: Original strand, 9190100 - 9190146
Alignment:
Q  66 ttagtccttacttaaattttattaaatttttggtccccaacgttttt 112  Q
    ||||||| ||||||||||||| |||| ||||||||||||| ||||||    
T  9190100 ttagtccatacttaaattttaataaacttttggtccccaatgttttt 9190146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 119
Target Start/End: Complemental strand, 34477266 - 34477224
Alignment:
Q  77 ttaaattttattaaatttttggtccccaacgtttttggccgtt 119  Q
    ||||||||||||||||||||| | ||||||||||||| |||||    
T  34477266 ttaaattttattaaatttttgattcccaacgtttttgtccgtt 34477224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 90; Significance: 2e-43; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 203 - 348
Target Start/End: Original strand, 11190381 - 11190524
Alignment:
Q  203 tttaaacagaacattatgcagcataagagacacttttttattcaataaaattattcgagattttctctcaattttgatggattccgaaaacccttatttt 302  Q
    |||||||||||||||||| ||| ||| ||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||| ||| ||||| |||    
T  11190381 tttaaacagaacattatgtagcttaaaagacactttttgattcaataaaattattcgagattttctctcaattctggtggattccggaaa-cctta-ttt 11190478  T
Q  303 gataggtttgtcgcttgcaacctgtcagtttatcttttaggtttag 348  Q
    ||||||||||||||||||||||||||  ||||| ||||||||||||    
T  11190479 gataggtttgtcgcttgcaacctgtctctttatattttaggtttag 11190524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 215 - 355
Target Start/End: Original strand, 26571044 - 26571183
Alignment:
Q  215 attatgcagcataagagacacttttttattcaataaaattattcgagattttctctcaattttgatggattccgaaaacccttattttgataggtttgtc 314  Q
    |||||||||| |||||| ||||| || |||||||||||||||||||||||||||||||||| |   ||||||||||||||| || ||| |||| ||||||    
T  26571044 attatgcagcctaagagccacttattcattcaataaaattattcgagattttctctcaattctagcggattccgaaaaccccta-tttaatagatttgtc 26571142  T
Q  315 gcttgcaacctgtcagtttatcttttaggtttagcgcttgc 355  Q
    ||||||||||||||  ||||||||||| |||||||||||||    
T  26571143 gcttgcaacctgtctatttatcttttaagtttagcgcttgc 26571183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 216 - 324
Target Start/End: Original strand, 3535929 - 3536037
Alignment:
Q  216 ttatgcagcataagagacacttttttattcaataaaattattcgagattttctctcaattt-tgatggattccgaaaacccttattttgataggtttgtc 314  Q
    ||||||||| |||||| |||  ||||||||| ||| | ||||||||||||||||||||||| || ||||||||| || ||||||||||||||||||||||    
T  3535929 ttatgcagcctaagaggcacacttttattcattaataatattcgagattttctctcaatttctggtggattccggaa-cccttattttgataggtttgtc 3536027  T
Q  315 gcttgcaacc 324  Q
    ||||||||||    
T  3536028 gcttgcaacc 3536037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 216 - 324
Target Start/End: Original strand, 3542140 - 3542248
Alignment:
Q  216 ttatgcagcataagagacacttttttattcaataaaattattcgagattttctctcaattt-tgatggattccgaaaacccttattttgataggtttgtc 314  Q
    ||||||||| |||||| |||  ||||||||| ||| | ||||||||||||||||||||||| || ||||||||| || ||||||||||||||||||||||    
T  3542140 ttatgcagcctaagaggcacacttttattcattaataatattcgagattttctctcaatttctggtggattccggaa-cccttattttgataggtttgtc 3542238  T
Q  315 gcttgcaacc 324  Q
    ||||||||||    
T  3542239 gcttgcaacc 3542248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 216 - 323
Target Start/End: Original strand, 30052096 - 30052205
Alignment:
Q  216 ttatgcagcataagagacac--ttttttattcaataaaattattcgagattttctctcaa-ttttgatggattccgaaaacccttattttgataggtttg 312  Q
    ||||||||| ||||||||||  ||||||||||| ||| | |||||||||||||||||||| ||||| |||||||||  |||||| |||||||||||||||    
T  30052096 ttatgcagcttaagagacacacttttttattcattaataatattcgagattttctctcaatttttggtggattccg-gaaccctaattttgataggtttg 30052194  T
Q  313 tcgcttgcaac 323  Q
    |||||||||||    
T  30052195 tcgcttgcaac 30052205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 232 - 323
Target Start/End: Original strand, 30049827 - 30049918
Alignment:
Q  232 acacttttttattcaataaaattattcgagattttctctcaa-ttttgatggattccgaaaacccttattttgataggtttgtcgcttgcaac 323  Q
    ||||||||||||||| ||| | |||||||||||||||||||| ||||| |||||||||  |||||| ||||||||||||||||||||||||||    
T  30049827 acacttttttattcattaataatattcgagattttctctcaatttttggtggattccg-gaaccctaattttgataggtttgtcgcttgcaac 30049918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 56 - 155
Target Start/End: Complemental strand, 7855449 - 7855350
Alignment:
Q  56 gttttaaaccttagtccttacttaaattttattaaatttttggtccccaacgtttttggccgttagcgaatttggtccctaccgtcaattgttgatgatt 155  Q
    ||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||| || || |||||||  ||||| || ||||| |||||    
T  7855449 gttttcaacattagtccctacttaaattttattaaatttttggtccccaacgttttttgccgtttgcaaaattggtcctcaccgtgaaatgttgctgatt 7855350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 216 - 355
Target Start/End: Complemental strand, 2339243 - 2339107
Alignment:
Q  216 ttatgcagcataagagaca-cttttttattcaataaaattattcgaga-ttttctctcaattttgatggattccgaaaacccttattttgataggtttgt 313  Q
    ||||||||| |||||| || |||||| ||||||||||||||| ||||| ||||||||||||| || |||||| || ||||||||| |||||||| |||||    
T  2339243 ttatgcagcctaagaggcatctttttcattcaataaaattat-cgagacttttctctcaattctggtggatttcggaaaccctta-tttgatagatttgt 2339146  T
Q  314 cgcttgcaacctgtcagtttatcttttaggtttagcgcttgc 355  Q
     ||||||| |||||| |||||  |||||||||||||||||||    
T  2339145 -gcttgcagcctgtctgttta--ttttaggtttagcgcttgc 2339107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 237 - 324
Target Start/End: Complemental strand, 29340980 - 29340892
Alignment:
Q  237 tttttattcaataaaattattcgaga-ttttctctcaattttgatggattccgaaaacccttattttgataggtttgtcgcttgcaacc 324  Q
    |||||||||| ||| | ||||||||| ||||||||||||| |  ||||||||| ||||| |||||||||||||||||||||||| ||||    
T  29340980 tttttattcattaataatattcgagacttttctctcaattctagtggattccggaaacctttattttgataggtttgtcgcttgtaacc 29340892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 264 - 355
Target Start/End: Complemental strand, 13645955 - 13645865
Alignment:
Q  264 tttctctcaattttgatggattccgaaaacccttattttgataggtttgtcgcttgcaacctgtcagtttatcttttaggtttagcgcttgc 355  Q
    |||||||||||| || | ||||||| ||||||||||||  |||||||||| |||||||| ||||| |||||||||||||| | |||||||||    
T  13645955 tttctctcaattctgttagattccggaaacccttattta-ataggtttgttgcttgcaatctgtctgtttatcttttaggctaagcgcttgc 13645865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 203 - 335
Target Start/End: Complemental strand, 2939898 - 2939768
Alignment:
Q  203 tttaaacagaacattatgcagcataagag-acacttttttattcaataaaattattcgagat-tttctctcaattttgatggattccgaaaacccttatt 300  Q
    ||||| |||||| ||||||||| |||||| ||||||||| |||||||||||| |||| | |  |||||||||||| || |||||| |||||||| |||||    
T  2939898 tttaagcagaac-ttatgcagcctaagaggacactttttcattcaataaaat-attcaaaaaatttctctcaattatggtggatttcgaaaacc-ttatt 2939802  T
Q  301 ttgataggtttgtcgcttgcaacctgtcagtttat 335  Q
    | ||||||||||||||||||||| |||| ||||||    
T  2939801 t-gataggtttgtcgcttgcaacatgtctgtttat 2939768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 112
Target Start/End: Complemental strand, 15119391 - 15119345
Alignment:
Q  66 ttagtccttacttaaattttattaaatttttggtccccaacgttttt 112  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||    
T  15119391 ttagtccctacttaaattttattaaatttttggtccccaacgttttt 15119345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 226 - 355
Target Start/End: Complemental strand, 8568772 - 8568646
Alignment:
Q  226 taagagacacttttttattcaataaaattattcgagattttctctcaattttgatggattccgaaaacccttattttgataggtttgtcgcttgcaacct 325  Q
    ||||||||| ||||  ||||||||||||||| | ||| ||| ||| |||| |  ||||||||||||||  || |||||| |||||||| ||||||||| |    
T  8568772 taagagacagttttccattcaataaaattat-ctagacttt-tcttaattctagtggattccgaaaactttt-ttttgacaggtttgtagcttgcaactt 8568676  T
Q  326 gtcagtttatcttttaggtttagcgcttgc 355  Q
    ||| ||||||||||||||||||||| ||||    
T  8568675 gtctgtttatcttttaggtttagcgtttgc 8568646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 280 - 355
Target Start/End: Complemental strand, 19474752 - 19474678
Alignment:
Q  280 tggattccgaaaacccttattttgataggtttgtcgcttgcaacctgtcagtttatcttttaggtttagcgcttgc 355  Q
    |||||| |||||||||||||||  ||||||||||| |||||||||| |  ||||||||||||| ||||||||||||    
T  19474752 tggatttcgaaaacccttattta-ataggtttgtctcttgcaacctatatgtttatcttttagctttagcgcttgc 19474678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 203 - 355
Target Start/End: Original strand, 3565620 - 3565768
Alignment:
Q  203 tttaaacagaacattatgcagcataagagacacttttttattcaataaaattattcgaga-ttttctctcaattttgatggattccgaaaacccttattt 301  Q
    |||||||||||| ||||| |||  ||||| |||||||  ||||||||||| ||||||||| ||||||||||||| || ||||||  | |||| |||||||    
T  3565620 tttaaacagaac-ttatgtagccaaagaggcacttttc-attcaataaaaatattcgagacttttctctcaattctggtggattttggaaactcttattt 3565717  T
Q  302 tgataggtttgtcgcttgcaacctgtcagtttatcttttaggtttagcgcttgc 355  Q
     ||||||||| |||||| ||||||||    |||||||||| |||||||| ||||    
T  3565718 -gataggtttatcgcttacaacctgt--tgttatcttttaagtttagcgtttgc 3565768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 67 - 109
Target Start/End: Complemental strand, 17246630 - 17246588
Alignment:
Q  67 tagtccttacttaaattttattaaatttttggtccccaacgtt 109  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  17246630 tagtccctacttaaattttattaaatttttggtccccaacgtt 17246588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 112
Target Start/End: Original strand, 8230953 - 8230991
Alignment:
Q  74 tacttaaattttattaaatttttggtccccaacgttttt 112  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  8230953 tacttaaattttattaaatttttgatccccaacgttttt 8230991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 77 - 122
Target Start/End: Complemental strand, 18503518 - 18503473
Alignment:
Q  77 ttaaattttattaaatttttggtccccaacgtttttggccgttagc 122  Q
    ||||||||||||||||||||||||||| ||||||||  ||||||||    
T  18503518 ttaaattttattaaatttttggtccccgacgtttttttccgttagc 18503473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 350
Target Start/End: Complemental strand, 27142659 - 27142537
Alignment:
Q  226 taagagacacttttttattcaataaaattattcgagattttctctcaattttgatggattccgaaaacccttattttgataggtttgtcgcttgcaacct 325  Q
    |||||| || ||||| ||||||||||||||| ||| |  || |||||||| || ||||||||  | ||||||| || ||  ||||||||||||||||| |    
T  27142659 taagaggcagtttttcattcaataaaattat-cgaaaacttttctcaattatggtggattccagatacccttaatt-gactggtttgtcgcttgcaactt 27142562  T
Q  326 gtcagtttatcttttaggtttagcg 350  Q
    |||  ||||||| ||||||||||||    
T  27142561 gtctatttatctcttaggtttagcg 27142537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 77 - 112
Target Start/End: Complemental strand, 5080047 - 5080012
Alignment:
Q  77 ttaaattttattaaatttttggtccccaacgttttt 112  Q
    ||||||||||||||||||||||||||| ||||||||    
T  5080047 ttaaattttattaaatttttggtccccgacgttttt 5080012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 68 - 111
Target Start/End: Original strand, 22971640 - 22971683
Alignment:
Q  68 agtccttacttaaattttattaaatttttggtccccaacgtttt 111  Q
    ||||| |||||||||||||||||||||||  |||||||||||||    
T  22971640 agtccctacttaaattttattaaattttttatccccaacgtttt 22971683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 68 - 111
Target Start/End: Complemental strand, 23816758 - 23816715
Alignment:
Q  68 agtccttacttaaattttattaaatttttggtccccaacgtttt 111  Q
    ||||| |||||||||||||||||||||||  |||||||||||||    
T  23816758 agtccctacttaaattttattaaattttttatccccaacgtttt 23816715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 112
Target Start/End: Original strand, 5078741 - 5078787
Alignment:
Q  66 ttagtccttacttaaattttattaaatttttggtccccaacgttttt 112  Q
    ||||||| ||| ||||||||||||||||||| ||||| |||||||||    
T  5078741 ttagtccctacataaattttattaaatttttagtcccgaacgttttt 5078787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 102
Target Start/End: Original strand, 7852283 - 7852329
Alignment:
Q  56 gttttaaaccttagtccttacttaaattttattaaatttttggtccc 102  Q
    ||||| ||| ||| ||| |||||||||||||||||||||||||||||    
T  7852283 gttttcaacattaatccctacttaaattttattaaatttttggtccc 7852329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 112
Target Start/End: Complemental strand, 22972336 - 22972290
Alignment:
Q  66 ttagtccttacttaaattttattaaatttttggtccccaacgttttt 112  Q
    ||||||| |||||| ||||||||||||||||||| ||||||| ||||    
T  22972336 ttagtccctacttatattttattaaatttttggttcccaacgctttt 22972290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 112
Target Start/End: Original strand, 23816062 - 23816108
Alignment:
Q  66 ttagtccttacttaaattttattaaatttttggtccccaacgttttt 112  Q
    ||||||| |||||| ||||||||||||||||||| ||||||| ||||    
T  23816062 ttagtccctacttatattttattaaatttttggttcccaacgctttt 23816108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 3e-39; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 74 - 172
Target Start/End: Complemental strand, 38875101 - 38875003
Alignment:
Q  74 tacttaaattttattaaatttttggtccccaacgtttttggccgttagcgaatttggtccctaccgtcaattgttgatgattgggttaacggaggcaaa 172  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  38875101 tacttaaattttattaaatttttggtccccaacgtttttgaccgttagtgaatttggtccctaccgtcaattgttgttgattgggttaacggaagcaaa 38875003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 232 - 353
Target Start/End: Original strand, 4303361 - 4303482
Alignment:
Q  232 acacttttttattcaataaaattattcgagattttctctcaattttgatggattccgaaaacccttattttgataggtttg-tcgcttgcaacctgtcag 330  Q
    ||||||||| |||||||||||||||||||||||||||||||||| |  ||||||||||||||||||| ||| ||||||||| ||||||||||||||||      
T  4303361 acactttttgattcaataaaattattcgagattttctctcaattctagtggattccgaaaaccctta-tttaataggtttgttcgcttgcaacctgtctc 4303459  T
Q  331 tttatcttttaggtttagcgctt 353  Q
    |||||||||||||||||||||||    
T  4303460 tttatcttttaggtttagcgctt 4303482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 226 - 324
Target Start/End: Complemental strand, 13882870 - 13882772
Alignment:
Q  226 taagagacacttttttattcaataaaattattcgagattttctctcaattttgatggattccgaaaacccttattttgataggtttgtcgcttgcaacc 324  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||    
T  13882870 taagagacactttttgattcaataaaattatttgagattttctctcaattctggtggattccggaaacccttattttgataggtttgtcgcttgcaacc 13882772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 203 - 355
Target Start/End: Complemental strand, 31577389 - 31577238
Alignment:
Q  203 tttaaacagaacattatgcagcataagagacacttttttattcaataaaattattcgaga-ttttctctcaattttgatggattccgaaaacccttattt 301  Q
    |||||||| ||| ||||||| | ||||||  ||||||| ||||||||||| ||||| ||| ||||||||||||| || |||||| || ||||||||||||    
T  31577389 tttaaacaaaac-ttatgcaacctaagaggaactttttcattcaataaaaatattcaagacttttctctcaattctggtggatttcggaaacccttattt 31577291  T
Q  302 tgataggtttgtcgcttgcaacctgtcagtttatcttttaggtttagcgcttgc 355  Q
     ||||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  31577290 -gataggtttgtcgcttgcaacctatctgtttatcttttaggtttagcgcttgc 31577238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 226 - 322
Target Start/End: Complemental strand, 13886372 - 13886276
Alignment:
Q  226 taagagacacttttttattcaataaaattattcgagattttctctcaattttgatggattccgaaaacccttattttgataggtttgtcgcttgcaa 322  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||||| || ||||||| | |||||||||||||||||||||||||||||||||    
T  13886372 taagagacactttttgattcaataaaatcattcgagattttctctcaattatggtggattctggaaacccttattttgataggtttgtcgcttgcaa 13886276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 203 - 348
Target Start/End: Complemental strand, 5678418 - 5678275
Alignment:
Q  203 tttaaacagaacattatgcagcataagagacacttttttattcaataaaattattcgaga-ttttctctcaattttgatggattccgaaaacccttattt 301  Q
    |||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||| || || | |  |  |||||||| ||    
T  5678418 tttaaacagaac-ttatgcagcttaagagacactttttcattcaataaaattattcgagacttttctctcaattctggtgta-tatgtgaaccctta-tt 5678322  T
Q  302 tgataggtttgtcgcttgcaacctgtcagtttatcttttaggtttag 348  Q
    |||||||||||||||||| |||||||| |||||||||||| ||||||    
T  5678321 tgataggtttgtcgcttgtaacctgtctgtttatcttttaagtttag 5678275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 203 - 348
Target Start/End: Complemental strand, 5703470 - 5703327
Alignment:
Q  203 tttaaacagaacattatgcagcataagagacacttttttattcaataaaattattcgaga-ttttctctcaattttgatggattccgaaaacccttattt 301  Q
    |||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||| || || | |  |  |||||||| ||    
T  5703470 tttaaacagaac-ttatgcagcttaagagacactttttcattcaataaaattattcgagacttttctctcaattctggtgta-tatgtgaaccctta-tt 5703374  T
Q  302 tgataggtttgtcgcttgcaacctgtcagtttatcttttaggtttag 348  Q
    |||||||||||||||||| |||||||| |||||||||||| ||||||    
T  5703373 tgataggtttgtcgcttgtaacctgtctgtttatcttttaagtttag 5703327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 56 - 161
Target Start/End: Complemental strand, 43832009 - 43831904
Alignment:
Q  56 gttttaaaccttagtccttacttaaattttattaaatttttggtccccaacgtttttggccgttagcgaatttggtccctaccgtcaattgttgatgatt 155  Q
    ||||| ||| ||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||  | ||||||||||| ||||||||| ||| |||||    
T  43832009 gttttcaacattagtccctacttaaattttattaaattttttgtccccaacgtttttgtccgttaatgtatttggtccctgccgtcaatttttgctgatt 43831910  T
Q  156 gggtta 161  Q
    ||||||    
T  43831909 gggtta 43831904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 280 - 355
Target Start/End: Complemental strand, 22572518 - 22572444
Alignment:
Q  280 tggattccgaaaacccttattttgataggtttgtcgcttgcaacctgtcagtttatcttttaggtttagcgcttgc 355  Q
    ||||||||| |||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||    
T  22572518 tggattccggaaacccttattt-gatagatttgtcgcttgcaacctgtctgtttatcttttaggtttagcgcttgc 22572444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 56 - 165
Target Start/End: Original strand, 43830687 - 43830796
Alignment:
Q  56 gttttaaaccttagtccttacttaaattttattaaatttttggtccccaacgtttttggccgttagcgaatttggtccctaccgtcaattgttgatgatt 155  Q
    ||||| ||| ||||||| |||||||||||||||||||||||| ||||||||||||||  |||||| || |||| ||| || ||||||||| ||| |||||    
T  43830687 gttttcaacattagtccctacttaaattttattaaatttttgatccccaacgtttttatccgttaacgtatttagtctctgccgtcaatttttgctgatt 43830786  T
Q  156 gggttaacgg 165  Q
    ||| ||||||    
T  43830787 gggctaacgg 43830796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 238 - 324
Target Start/End: Complemental strand, 859329 - 859242
Alignment:
Q  238 ttttattcaataaaattattcgaga-ttttctctcaattttgatggattccgaaaacccttattttgataggtttgtcgcttgcaacc 324  Q
    ||||||||| ||| | |||| |||| ||||||||||||| || ||||||||| ||||| |||||||||||||||||||||||||||||    
T  859329 ttttattcattaataatatttgagacttttctctcaattctggtggattccggaaacctttattttgataggtttgtcgcttgcaacc 859242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 238 - 324
Target Start/End: Complemental strand, 1217333 - 1217246
Alignment:
Q  238 ttttattcaataaaattattcgaga-ttttctctcaattttgatggattccgaaaacccttattttgataggtttgtcgcttgcaacc 324  Q
    ||||||||| ||| | |||| |||| ||||||||||||| || ||||||||| ||||| |||||||||||||||||||||||||||||    
T  1217333 ttttattcattaataatatttgagacttttctctcaattctggtggattccggaaacctttattttgataggtttgtcgcttgcaacc 1217246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 203 - 347
Target Start/End: Complemental strand, 4668372 - 4668229
Alignment:
Q  203 tttaaacagaacattatgcagcataagagacacttttttattcaataaaattattcgaga-ttttctctcaattttgatggattccgaaaacccttattt 301  Q
    |||||||| ||| ||||||||| |||||| |||||||| ||| || |||| ||||||||| |||||||| ||||  | ||||||  | ||||||||||||    
T  4668372 tttaaacataac-ttatgcagcctaagaggcactttttcattgaaaaaaaatattcgagacttttctcttaattcaggtggattatggaaacccttattt 4668274  T
Q  302 tgataggtttgtcgcttgcaacctgtcagtttatcttttaggttta 347  Q
      ||||||||||||||| || ||| || ||||||||||||||||||    
T  4668273 a-ataggtttgtcgcttacatcctttctgtttatcttttaggttta 4668229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 38873938 - 38873986
Alignment:
Q  87 ttaaatttttggtccccaacgtttttggccgttagcgaatttggtccct 135  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  38873938 ttaaatttttggtccccaacgtttttggccgtcagcgaatttggtccct 38873986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 165
Target Start/End: Original strand, 43308510 - 43308600
Alignment:
Q  75 acttaaattttattaaatttttggtccccaacgtttttggccgttagcgaatttggtccctaccgtcaattgttgatgattgggttaacgg 165  Q
    ||||||||||||||||||||||||||||||||||||||  |  |||| | ||||  |||||||||| |||| ||| |||||||| ||||||    
T  43308510 acttaaattttattaaatttttggtccccaacgtttttatctattagtgtatttcatccctaccgttaatttttgctgattgggctaacgg 43308600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 112
Target Start/End: Original strand, 46043412 - 46043458
Alignment:
Q  66 ttagtccttacttaaattttattaaatttttggtccccaacgttttt 112  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||    
T  46043412 ttagtccctacttaaattttattaaatttttggtccccaacgttttt 46043458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 66 - 122
Target Start/End: Original strand, 3495403 - 3495459
Alignment:
Q  66 ttagtccttacttaaattttattaaatttttggtccccaacgtttttggccgttagc 122  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||  ||||||||    
T  3495403 ttagtccctacttaaattttattaaatttttggtccccgacgtttttttccgttagc 3495459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 19056879 - 19056923
Alignment:
Q  8 gtccacaattaggaattgattcgtcaaaaccatattaatttggtg 52  Q
    |||||||||||||||||||||||||||||||||||| ||||||||    
T  19056879 gtccacaattaggaattgattcgtcaaaaccatattgatttggtg 19056923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 268 - 355
Target Start/End: Original strand, 32052989 - 32053074
Alignment:
Q  268 tctcaattttgatggattccgaaaacccttattttgataggtttgtcgcttgcaacctgtcagtttatcttttaggtttagcgcttgc 355  Q
    |||||||| || |||||| || ||||||||  ||||| || ||||||||||||||  |||| ||||||||||||||||||||||||||    
T  32052989 tctcaattctggtggatttcggaaaccctt--tttgacagatttgtcgcttgcaaattgtctgtttatcttttaggtttagcgcttgc 32053074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 74 - 122
Target Start/End: Complemental strand, 33625948 - 33625900
Alignment:
Q  74 tacttaaattttattaaatttttggtccccaacgtttttggccgttagc 122  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||    
T  33625948 tacttaaattttattaaatttttggtccccaacgtttttttccgttagc 33625900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 56 - 112
Target Start/End: Complemental strand, 15131889 - 15131833
Alignment:
Q  56 gttttaaaccttagtccttacttaaattttattaaatttttggtccccaacgttttt 112  Q
    ||||| ||| ||||| | ||||||||||||||||||||||||||||||||| |||||    
T  15131889 gttttcaacattagttcctacttaaattttattaaatttttggtccccaacattttt 15131833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 57 - 109
Target Start/End: Complemental strand, 38200128 - 38200076
Alignment:
Q  57 ttttaaaccttagtccttacttaaattttattaaatttttggtccccaacgtt 109  Q
    |||| ||| |||||| |||||||||||||||||||||||||||||| ||||||    
T  38200128 ttttcaacattagtcattacttaaattttattaaatttttggtcccaaacgtt 38200076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 347
Target Start/End: Complemental strand, 32936927 - 32936824
Alignment:
Q  241 tattcaataaaattattcgagattttctctcaattttgatggattccgaaaacccttattttgataggtttgtcgcttgcaacctgtcagtttatctttt 340  Q
    |||||||||||||||| ||||| ||| |||||||| || ||||||||||||||||||| ||||| |  ||||| ||||||||| |||  ||||| || ||    
T  32936927 tattcaataaaattat-cgagaattt-tctcaattatggtggattccgaaaaccctta-tttgacatatttgttgcttgcaacttgtttgtttagctctt 32936831  T
Q  341 aggttta 347  Q
    |||||||    
T  32936830 aggttta 32936824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 122
Target Start/End: Complemental strand, 46044854 - 46044788
Alignment:
Q  56 gttttaaaccttagtccttacttaaattttattaaatttttggtccccaacgtttttggccgttagc 122  Q
    ||||| ||| ||||||| |||||||||||||||||||||||| |||| || ||||||  ||||||||    
T  46044854 gttttcaacattagtccctacttaaattttattaaatttttgatccctaatgtttttttccgttagc 46044788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 112
Target Start/End: Original strand, 46330541 - 46330587
Alignment:
Q  66 ttagtccttacttaaattttattaaatttttggtccccaacgttttt 112  Q
    ||||||| |||||||||||||||||||||||  ||||||||||||||    
T  46330541 ttagtccctacttaaattttattaaattttttatccccaacgttttt 46330587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 112
Target Start/End: Complemental strand, 46331917 - 46331871
Alignment:
Q  66 ttagtccttacttaaattttattaaatttttggtccccaacgttttt 112  Q
    ||||||| ||||||||||||||||||||||||||| | |||||||||    
T  46331917 ttagtccctacttaaattttattaaatttttggtctcaaacgttttt 46331871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 125
Target Start/End: Complemental strand, 3496722 - 3496673
Alignment:
Q  74 tacttaaattttattaaatttttggtccccaacgtttttggccgttagcgaa 125  Q
    |||||||||||||||| |||||||||| |||||||||||  |||||||||||    
T  3496722 tacttaaattttattatatttttggtctccaacgttttt--ccgttagcgaa 3496673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 112
Target Start/End: Original strand, 33624520 - 33624576
Alignment:
Q  56 gttttaaaccttagtccttacttaaattttattaaatttttggtccccaacgttttt 112  Q
    ||||| ||| ||||| | |||||||||||||||||||||||| |||||||| |||||    
T  33624520 gtttttaacattagttcctacttaaattttattaaatttttgatccccaactttttt 33624576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 122
Target Start/End: Original strand, 38198807 - 38198863
Alignment:
Q  66 ttagtccttacttaaattttattaaatttttggtccccaacgtttttggccgttagc 122  Q
    ||||||| || ||||||||||||||||||||||||||| | ||||||  ||||||||    
T  38198807 ttagtccctatttaaattttattaaatttttggtccccgatgtttttttccgttagc 38198863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 122
Target Start/End: Complemental strand, 43084380 - 43084332
Alignment:
Q  74 tacttaaattttattaaatttttggtccccaacgtttttggccgttagc 122  Q
    ||||||||||||||||||||||||||||||  |||||||  ||||||||    
T  43084380 tacttaaattttattaaatttttggtccccgtcgtttttttccgttagc 43084332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 112
Target Start/End: Complemental strand, 44168341 - 44168286
Alignment:
Q  56 gttttaaaccttagtccttacttaaattttattaaatttttggtccccaacgttttt 112  Q
    ||||| ||| ||||||| |||||||||||||||||||||||| | ||||||||||||    
T  44168341 gttttcaacattagtccctacttaaattttattaaatttttgat-cccaacgttttt 44168286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 232 - 275
Target Start/End: Original strand, 4300468 - 4300511
Alignment:
Q  232 acacttttttattcaataaaattattcgagattttctctcaatt 275  Q
    ||||||||| ||||||| |||||||| |||||||||||||||||    
T  4300468 acactttttgattcaatcaaattatttgagattttctctcaatt 4300511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 56 - 103
Target Start/End: Original strand, 45957841 - 45957888
Alignment:
Q  56 gttttaaaccttagtccttacttaaattttattaaatttttggtcccc 103  Q
    ||||| ||| |||| || ||||||||||||||||||||||||||||||    
T  45957841 gttttcaacattagcccctacttaaattttattaaatttttggtcccc 45957888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 101
Target Start/End: Original strand, 43083063 - 43083108
Alignment:
Q  56 gttttaaaccttagtccttacttaaattttattaaatttttggtcc 101  Q
    ||||| ||| ||||||  ||||||||||||||||||||||||||||    
T  43083063 gtttttaacattagtctctacttaaattttattaaatttttggtcc 43083108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 203 - 354
Target Start/End: Complemental strand, 42071528 - 42071378
Alignment:
Q  203 tttaaacagaacattatgcagcataagagacacttttttattcaataaaattattcgagattttctctcaattttgatggattccgaaaacccttatttt 302  Q
    |||||||| ||||||||||||| |||||  || ||||  ||||||||||||||||||||||| |||||||||| |||||||||||  |||| |||| |||    
T  42071528 tttaaacataacattatgcagcctaagatgcatttttgaattcaataaaattattcgagattctctctcaattatgatggattccagaaacgctta-ttt 42071430  T
Q  303 gataggtttgtcgcttgcaacctgtcagtttatcttttaggtttagcgcttg 354  Q
    |||||||||||| |||| ||| |||| |||||||||||||||||||||||||    
T  42071429 gataggtttgtcacttgtaacatgtctgtttatcttttaggtttagcgcttg 42071378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 216 - 324
Target Start/End: Complemental strand, 50857640 - 50857530
Alignment:
Q  216 ttatgcagcataagag--acacttttttattcaataaaattattcgagattttctctcaattttgatggattccgaaaacccttattttgataggtttgt 313  Q
    ||||||||| ||||||  ||||||||| || ||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||    
T  50857640 ttatgcagcctaagaggcacactttttgatacaataaaattattcgagattttctctcaattctggtggattccggaaacccttattttgataggtttgt 50857541  T
Q  314 cgcttgcaacc 324  Q
    |||||||||||    
T  50857540 cgcttgcaacc 50857530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 243 - 363
Target Start/End: Complemental strand, 12486392 - 12486274
Alignment:
Q  243 ttcaataaaattattcgagattttctctcaattttgatggattccgaaaacccttattttgataggtttgtcgcttgcaacctgtcagtttatcttttag 342  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||| ||||||||  | || |||| | || |||    
T  12486392 ttcaataaaattattcgagattttctctcaattttggtggattccgaaaaccctta-tttaataggtttgttgcttgcaatatatctgttt-tattgtag 12486295  T
Q  343 gtttagcgcttgcgaactctt 363  Q
    |||||| |||||| |||||||    
T  12486294 gtttagtgcttgctaactctt 12486274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 216 - 322
Target Start/End: Complemental strand, 13444183 - 13444076
Alignment:
Q  216 ttatgcagcataagagacacttttttattcaataaaattattcgaga-ttttctctcaattttgatggattccgaaaacccttattttgataggtttgtc 314  Q
    ||||| ||| |||||| ||| |||||||||| ||| | |||| |||| ||||||||||||| || |||||| || ||||||||||||||||| |||||||    
T  13444183 ttatgtagcctaagaggcacatttttattcagtaataatattagagacttttctctcaattctggtggattacggaaacccttattttgatatgtttgtc 13444084  T
Q  315 gcttgcaa 322  Q
    ||||||||    
T  13444083 gcttgcaa 13444076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 232 - 324
Target Start/End: Original strand, 8931132 - 8931223
Alignment:
Q  232 acacttttttattcaataaaattattcgagattttctctcaattt-tgatggattccgaaaacccttattttgataggtttgtcgcttgcaacc 324  Q
    |||||||||||| || ||| | ||||||||||||||||||||||| || ||||||||| || ||||||| ||||||||||||||||||||||||    
T  8931132 acacttttttat-cattaataatattcgagattttctctcaatttctggtggattccggaa-cccttatattgataggtttgtcgcttgcaacc 8931223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 226 - 341
Target Start/End: Complemental strand, 12033736 - 12033620
Alignment:
Q  226 taagagaca-cttttttattcaataaaattattcgaga-ttttctctcaattttgatggattccgaaaacccttattttgataggtttgtcgcttgcaac 323  Q
    ||||||||| |||||||||| ||||||| ||||||||| ||||||||||||| | |||||||  | ||||||| |||| |||| ||||||||||||||||    
T  12033736 taagagacaacttttttatttaataaaaatattcgagacttttctctcaattctaatggattatgtaaaccctcattt-gataagtttgtcgcttgcaac 12033638  T
Q  324 ctgtcagtttatctttta 341  Q
     |||  ||||||||||||    
T  12033637 ttgtttgtttatctttta 12033620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 226 - 299
Target Start/End: Complemental strand, 50005309 - 50005237
Alignment:
Q  226 taagagacacttttttattcaataaaattattcgagattttctctcaattttgatggattccgaaaacccttat 299  Q
    |||||||||| |||| ||||||||||||||| |||||  || ||||||||||||||||||||||||||||||||    
T  50005309 taagagacaccttttcattcaataaaattat-cgagaacttttctcaattttgatggattccgaaaacccttat 50005237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 238 - 324
Target Start/End: Complemental strand, 13441772 - 13441685
Alignment:
Q  238 ttttattcaataaaattattcgaga-ttttctctcaattttgatggattccgaaaacccttattttgataggtttgtcgcttgcaacc 324  Q
    ||||||||| ||| | |||| |||| ||||||||||||| |||||||||||| ||| ||||||||| |||||||| ||||||||||||    
T  13441772 ttttattcattaataatattagagacttttctctcaattctgatggattccggaaatccttattttaataggtttttcgcttgcaacc 13441685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 112
Target Start/End: Original strand, 29231082 - 29231128
Alignment:
Q  66 ttagtccttacttaaattttattaaatttttggtccccaacgttttt 112  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||    
T  29231082 ttagtccttacttaaattttattaaatttttggtccccgacgttttt 29231128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 112
Target Start/End: Original strand, 33708064 - 33708110
Alignment:
Q  66 ttagtccttacttaaattttattaaatttttggtccccaacgttttt 112  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||    
T  33708064 ttagtccatacttaaattttattaaatttttggtccccaacgttttt 33708110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 226 - 349
Target Start/End: Original strand, 45085651 - 45085774
Alignment:
Q  226 taagagacacttttttattcaataaaattattcgaga--ttttctctcaattttgatggattccgaaaacccttattttgataggtttgtcgcttgcaac 323  Q
    |||||| || ||||| |||||||||| ||||| ||||  ||||||||||||| || |||||| ||||||| |||||| | | |  |||||||||||||||    
T  45085651 taagaggcagtttttcattcaataaacttatt-gagaacttttctctcaattctggtggatttcgaaaactcttattgtca-atatttgtcgcttgcaac 45085748  T
Q  324 ctgtcagtttatcttttaggtttagc 349  Q
     |||| ||||||||||||||||||||    
T  45085749 ttgtctgtttatcttttaggtttagc 45085774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 56 - 122
Target Start/End: Original strand, 46595888 - 46595954
Alignment:
Q  56 gttttaaaccttagtccttacttaaattttattaaatttttggtccccaacgtttttggccgttagc 122  Q
    ||||| ||| ||||||| ||||||||||||||||||||||| |||||||||||||||  ||||||||    
T  46595888 gttttcaacgttagtccctacttaaattttattaaattttttgtccccaacgtttttttccgttagc 46595954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 66 - 122
Target Start/End: Complemental strand, 33709496 - 33709440
Alignment:
Q  66 ttagtccttacttaaattttattaaatttttggtccccaacgtttttggccgttagc 122  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||  ||||||||    
T  33709496 ttagtccctacttaaattttattaaatttttgatccccaacgtttttttccgttagc 33709440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 66 - 122
Target Start/End: Original strand, 36248078 - 36248134
Alignment:
Q  66 ttagtccttacttaaattttattaaatttttggtccccaacgtttttggccgttagc 122  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||  ||||||||    
T  36248078 ttagtccctacttaaattttattaaatttttggtccccgacgtttttttccgttagc 36248134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 66 - 112
Target Start/End: Complemental strand, 12368761 - 12368715
Alignment:
Q  66 ttagtccttacttaaattttattaaatttttggtccccaacgttttt 112  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||||    
T  12368761 ttagtccctacttaaattttattaaatttttggtccctaacgttttt 12368715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 56 - 122
Target Start/End: Original strand, 15053381 - 15053447
Alignment:
Q  56 gttttaaaccttagtccttacttaaattttattaaatttttggtccccaacgtttttggccgttagc 122  Q
    ||||| ||| ||||||| ||||||||||||||||||| |||||||||| ||||||||  ||||||||    
T  15053381 gttttcaacattagtccctacttaaattttattaaatatttggtccccgacgtttttttccgttagc 15053447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 62 - 112
Target Start/End: Complemental strand, 36368448 - 36368398
Alignment:
Q  62 aaccttagtccttacttaaattttattaaatttttggtccccaacgttttt 112  Q
    ||||||||||| |||||||||||||||||||||||| |||||||| |||||    
T  36368448 aaccttagtccctacttaaattttattaaatttttgatccccaacattttt 36368398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 66 - 112
Target Start/End: Complemental strand, 37987244 - 37987198
Alignment:
Q  66 ttagtccttacttaaattttattaaatttttggtccccaacgttttt 112  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||    
T  37987244 ttagtccctacttaaattttattaaatttttggtccccgacgttttt 37987198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 234 - 363
Target Start/End: Original strand, 40804573 - 40804700
Alignment:
Q  234 acttttttattcaataaaattattcgaga-ttttctctcaattttgatggattccgaaaacccttattttgataggtttgtcgcttgcaacctgtcagtt 332  Q
    ||||||| ||||||||| || |||||||| ||||||||||||| || ||||||  | |||||| ||||| |||||||||||||||||||| || |  | |    
T  40804573 actttttcattcaataatat-attcgagacttttctctcaattctggtggattttggaaacccgtattt-gataggtttgtcgcttgcaatctttttgct 40804670  T
Q  333 tatcttttaggtttagcgcttgcgaactctt 363  Q
    ||||||||| | ||||||||||| |||||||    
T  40804671 tatcttttatg-ttagcgcttgctaactctt 40804700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 202 - 353
Target Start/End: Original strand, 42646558 - 42646702
Alignment:
Q  202 gtttaaacagaacattatgcagcataagagacacttttttattcaataaaattattcgagattttctctcaattttgatggattccgaaaacccttattt 301  Q
    ||||||||| ||| ||||||||  ||||||||| ||||| ||||||||||| |   ||||| ||| | ||||||||| ||||||| | ||||||||| ||    
T  42646558 gtttaaacaaaac-ttatgcagtttaagagacattttttcattcaataaaaattaccgagacttt-tttcaattttggtggattctggaaaccctta-tt 42646654  T
Q  302 tgataggtttgtcgcttgcaacctgtcagtttatcttttaggtttagcgctt 353  Q
    |||||||||||||| ||||| | |    |||||||||||| |||||||||||    
T  42646655 tgataggtttgtcgtttgcagctt----gtttatcttttatgtttagcgctt 42646702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 68 - 112
Target Start/End: Complemental strand, 21795941 - 21795897
Alignment:
Q  68 agtccttacttaaattttattaaatttttggtccccaacgttttt 112  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||    
T  21795941 agtccctacttaaattttattaaatttttggtccccaatgttttt 21795897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 66 - 122
Target Start/End: Original strand, 30981495 - 30981550
Alignment:
Q  66 ttagtccttacttaaattttattaaatttttggtccccaacgtttttggccgttagc 122  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||  ||||||||    
T  30981495 ttagtccctacttaaattttattaaatttttggt-cccaacgtttttttccgttagc 30981550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 74 - 125
Target Start/End: Complemental strand, 15054735 - 15054684
Alignment:
Q  74 tacttaaattttattaaatttttggtccccaacgtttttggccgttagcgaa 125  Q
    |||| ||||||||||||||||||||||||||| ||||||  |||||||||||    
T  15054735 tactaaaattttattaaatttttggtccccaatgtttttttccgttagcgaa 15054684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 74 - 125
Target Start/End: Complemental strand, 29232187 - 29232136
Alignment:
Q  74 tacttaaattttattaaatttttggtccccaacgtttttggccgttagcgaa 125  Q
    |||||||||||||||||||||||||| ||||||| ||||  |||||||||||    
T  29232187 tacttaaattttattaaatttttggttcccaacggttttttccgttagcgaa 29232136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 112
Target Start/End: Original strand, 21794831 - 21794869
Alignment:
Q  74 tacttaaattttattaaatttttggtccccaacgttttt 112  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  21794831 tacttaaattttattaaatttttggtccccaatgttttt 21794869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 122
Target Start/End: Complemental strand, 36249419 - 36249354
Alignment:
Q  56 gttttaaaccttagtccttacttaaattttattaaatttttggtccccaacgtttttggccgttagc 122  Q
    ||||| ||| ||||||| |||||||||||||||||| |||||||||| |||||||||  ||||||||    
T  36249419 gttttcaacattagtccctacttaaattttattaaa-ttttggtcccaaacgtttttttccgttagc 36249354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 122
Target Start/End: Complemental strand, 30982908 - 30982852
Alignment:
Q  66 ttagtccttacttaaattttattaaatttttggtccccaacgtttttggccgttagc 122  Q
    ||||||| |||||||||||||||||||||||  ||||||||||| ||  ||||||||    
T  30982908 ttagtccctacttaaattttattaaattttttatccccaacgttcttttccgttagc 30982852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 355
Target Start/End: Original strand, 49044165 - 49044209
Alignment:
Q  311 tgtcgcttgcaacctgtcagtttatcttttaggtttagcgcttgc 355  Q
    ||||||||||| ||| || ||||||||||||||||||||||||||    
T  49044165 tgtcgcttgcagcctatctgtttatcttttaggtttagcgcttgc 49044209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 226 - 355
Target Start/End: Original strand, 16261517 - 16261646
Alignment:
Q  226 taagagaca-cttttttattcaataaaattattcgaga-ttttctctcaattttgatggattccgaaaacccttattttgataggtttgtcgcttgcaac 323  Q
    ||||||||| |||||||||||||||| |||| |||||| |||| | ||||||| |||||||| | ||||| |||| ||||||| |||| ||| ||  |||    
T  16261517 taagagacaacttttttattcaataatatta-tcgagacttttttatcaatttcgatggatttcaaaaactctta-tttgatacgtttatcgattataac 16261614  T
Q  324 ctgtcagtttatcttttaggtttagcgcttgc 355  Q
    ||||   |||||||||||| ||||||| ||||    
T  16261615 ctgtttatttatcttttagatttagcgtttgc 16261646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 77 - 112
Target Start/End: Original strand, 36362234 - 36362269
Alignment:
Q  77 ttaaattttattaaatttttggtccccaacgttttt 112  Q
    |||||||||||||||||||| |||||||||||||||    
T  36362234 ttaaattttattaaatttttagtccccaacgttttt 36362269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 112
Target Start/End: Original strand, 37985953 - 37985999
Alignment:
Q  66 ttagtccttacttaaattttattaaatttttggtccccaacgttttt 112  Q
    ||||||| || ||||||||||||||||||||| || |||||||||||    
T  37985953 ttagtccctatttaaattttattaaatttttgatctccaacgttttt 37985999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 112
Target Start/End: Complemental strand, 534173 - 534117
Alignment:
Q  56 gttttaaaccttagtccttacttaaattttattaaatttttggtccccaacgttttt 112  Q
    ||||| ||| ||||| | || ||||||||||||||||||||| |||| |||||||||    
T  534173 gttttcaacattagttcctatttaaattttattaaatttttgatcccgaacgttttt 534117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 44)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 203 - 355
Target Start/End: Original strand, 19949885 - 19950036
Alignment:
Q  203 tttaaacagaacattatgcagcataagagacacttttttattcaataaaattattcgaga-ttttctctcaattttgatggattccgaaaacccttattt 301  Q
    |||||||||||| ||||||||| |||||| |||||| | ||| ||||||| |||| |||| ||||||||||||| ||||||||||| |||||||||||||    
T  19949885 tttaaacagaac-ttatgcagcctaagagtcactttatcattgaataaaaatattagagacttttctctcaattctgatggattccaaaaacccttattt 19949983  T
Q  302 tgataggtttgtcgcttgcaacctgtcagtttatcttttaggtttagcgcttgc 355  Q
     |||| |||||||||||||||| | || ||||||||||||||||||||||||||    
T  19949984 -gataagtttgtcgcttgcaacttatctgtttatcttttaggtttagcgcttgc 19950036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 232 - 324
Target Start/End: Original strand, 5128820 - 5128912
Alignment:
Q  232 acacttttttattcaataaaattattcgagattttctctcaattttgatggattccgaaaacccttattttgataggtttgtcgcttgcaacc 324  Q
    ||||||||| |||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||    
T  5128820 acactttttgattcaataaaattattcgagattttctctcaattctggtggattccggaaacccttattttgataggtttgtcgcttgcaacc 5128912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 220 - 355
Target Start/End: Complemental strand, 20398590 - 20398455
Alignment:
Q  220 gcagcataagagacacttttttattcaataaaattattcgaga-ttttctctcaattttgatggattccgaaaacccttattttgataggtttgtcgctt 318  Q
    ||||| ||||||||| ||||||||| || |||| ||||||||| |||| |||||||| || |||||||||||||||||||||| |||||  |||||||||    
T  20398590 gcagcctaagagacagttttttatttaagaaaaatattcgagacttttttctcaattctggtggattccgaaaacccttattt-gatagacttgtcgctt 20398492  T
Q  319 gcaacctgtcagtttatcttttaggtttagcgcttgc 355  Q
    |||||||||| | ||||||||||||||||||||||||    
T  20398491 gcaacctgtctgattatcttttaggtttagcgcttgc 20398455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 247 - 353
Target Start/End: Complemental strand, 40593605 - 40593501
Alignment:
Q  247 ataaaattattcgagattttctctcaattttgatggattccgaaaacccttattttgataggtttgtcgcttgcaacctgtcagtttatcttttaggttt 346  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||| |||| | |||| |||||    
T  40593605 ataaaattattcgagattttctctcaattttggtggattccgaaaaccctta-tttgataggtttgtcgcttgcaacccgtctgttt-tttttttggttt 40593508  T
Q  347 agcgctt 353  Q
    |||||||    
T  40593507 agcgctt 40593501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 237 - 355
Target Start/End: Original strand, 4580479 - 4580596
Alignment:
Q  237 tttttattcaataaaattattcgaga-ttttctctcaattttgatggattccgaaaacccttattttgataggtttgtcgcttgcaacctgtcagtttat 335  Q
    |||| |||||||||||| |||||||| ||||||||||||| |  ||||||| |||||||||||||| |||||||||||||||||||||||||  ||||||    
T  4580479 ttttcattcaataaaat-attcgagaattttctctcaattctagtggattctgaaaacccttattt-gataggtttgtcgcttgcaacctgtgtgtttat 4580576  T
Q  336 cttttaggtttagcgcttgc 355  Q
    ||||||||||||||||||||    
T  4580577 cttttaggtttagcgcttgc 4580596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 203 - 314
Target Start/End: Original strand, 19795135 - 19795244
Alignment:
Q  203 tttaaacagaacattatgcagcataagagacacttttttattcaataaaattattcgagattttctctcaattttgatggattccgaaaacccttatttt 302  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||| ||||||| |||||| || ||  ||||||||     
T  19795135 tttaaacagaacattatgcagcctaagagacaattttttattcaataaaattattccagattttctctaaattttggtggatttcgtaa--ccttatttg 19795232  T
Q  303 gataggtttgtc 314  Q
     |||||||||||    
T  19795233 cataggtttgtc 19795244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 203 - 353
Target Start/End: Original strand, 41218686 - 41218835
Alignment:
Q  203 tttaaacagaacattatgcagcataagagacacttttttattcaataaaattattcgaga-ttttctctcaattttgatggattccgaaaacccttattt 301  Q
    ||||| |||||| ||||| ||| ||||||||||  ||||||||||||| | ||||||||| ||||||||||||| || ||||||||| ||| ||||||||    
T  41218686 tttaagcagaac-ttatggagcctaagagacacacttttattcaataataatattcgagacttttctctcaattctggtggattccggaaagccttattt 41218784  T
Q  302 tgataggtttgtcgcttgcaacctgtcagtttatcttttaggtttagcgctt 353  Q
     |||||||||||||||| |||||| ||  |||||||||||| ||||||||||    
T  41218785 -gataggtttgtcgcttacaacctatctatttatcttttagatttagcgctt 41218835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 238 - 324
Target Start/End: Complemental strand, 3063910 - 3063823
Alignment:
Q  238 ttttattcaataaaattattcgaga-ttttctctcaattttgatggattccgaaaacccttattttgataggtttgtcgcttgcaacc 324  Q
    ||||||||| ||| | ||||||||| ||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||    
T  3063910 ttttattcattaataatattcgagacttttctctcaattctggttgattccgaaaacccttattttgataggtttgtcgcttgcaacc 3063823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 238 - 324
Target Start/End: Complemental strand, 3069048 - 3068961
Alignment:
Q  238 ttttattcaataaaattattcgaga-ttttctctcaattttgatggattccgaaaacccttattttgataggtttgtcgcttgcaacc 324  Q
    ||||||||| ||| | ||||||| | |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  3069048 ttttattcattaataatattcgatacttttctctcaattttggtggattccggaaacccttattttgataggtttgtcgcttgcaacc 3068961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 236 - 347
Target Start/End: Complemental strand, 25340256 - 25340146
Alignment:
Q  236 ttttttattcaataaaattattcgagattttctctcaattttgatggattccgaaaacccttattttgataggtttgtcgcttgcaacctgtcagtttat 335  Q
    |||||||||||||||||||  |||| |  || |||||||| |||||||||||  |||||||||||| ||||||||||| || ||||||||||| ||||||    
T  25340256 ttttttattcaataaaatttatcgacaacttttctcaattatgatggattccagaaacccttattt-gataggtttgttgcgtgcaacctgtctgtttat 25340158  T
Q  336 cttttaggttta 347  Q
    ||||||||||||    
T  25340157 cttttaggttta 25340146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 74 - 165
Target Start/End: Original strand, 19825334 - 19825425
Alignment:
Q  74 tacttaaattttattaaatttttggtccccaacgtttttggccgttagcgaatttggtccctaccgtcaattgttgatgattgggttaacgg 165  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||||| | ||||||||| ||| || |||| ||| |||||||| ||||||    
T  19825334 tacttaaatttaattaaatttttggtccccaacgtttttgtccgttagtgtatttggtccttactgttaatttttgctgattgggctaacgg 19825425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 238 - 320
Target Start/End: Original strand, 53012942 - 53013025
Alignment:
Q  238 ttttattcaataaaattattcgaga-ttttctctcaattttgatggattccgaaaacccttattttgataggtttgtcgcttgc 320  Q
    ||||||||| ||| | ||||||||| ||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||    
T  53012942 ttttattcattaataatattcgagacttttctctcaattctggtggattccggaaacccttattttgataggtttgtcgcttgc 53013025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 216 - 324
Target Start/End: Complemental strand, 43304153 - 43304046
Alignment:
Q  216 ttatgcagcataagagacacttttttattcaataaaattattcgaga-ttttctctcaattttgatggattccgaaaacccttattttgataggtttgtc 314  Q
    ||||| ||| ||||||||||||||  ||||| ||| | ||||||||| ||||||||||||| || |||||| || ||||||||||||| |||||||||||    
T  43304153 ttatgtagcctaagagacactttt--attcattaataatattcgagacttttctctcaattctggtggatttcggaaacccttattttaataggtttgtc 43304056  T
Q  315 gcttgcaacc 324  Q
    ||||||||||    
T  43304055 gcttgcaacc 43304046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 216 - 324
Target Start/End: Complemental strand, 43306867 - 43306758
Alignment:
Q  216 ttatgcagcataagagacacttttttattcaataaaattattcgaga-ttttctctcaattttgatggattccgaaaacccttattttgataggtttgtc 314  Q
    ||||| ||| |||||| |||  ||||||||| ||| | ||||| ||| ||||||||||||| || |||||| || |||||||||||||||||||||||||    
T  43306867 ttatgtagcctaagaggcacacttttattcattaataatattcaagacttttctctcaattctggtggattacggaaacccttattttgataggtttgtc 43306768  T
Q  315 gcttgcaacc 324  Q
    ||||||||||    
T  43306767 gcttgcaacc 43306758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 66 - 122
Target Start/End: Original strand, 116668 - 116724
Alignment:
Q  66 ttagtccttacttaaattttattaaatttttggtccccaacgtttttggccgttagc 122  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||  ||||||||    
T  116668 ttagtccctacttaaattttattaaatttttggtccccaacgtttttttccgttagc 116724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 74 - 137
Target Start/End: Complemental strand, 3670747 - 3670684
Alignment:
Q  74 tacttaaattttattaaatttttggtccccaacgtttttggccgttagcgaatttggtccctac 137  Q
    |||||||||||||||| ||||||||||| ||||||||||| ||||||| | |||||||||||||    
T  3670747 tacttaaattttattatatttttggtcctcaacgtttttgtccgttagtgtatttggtccctac 3670684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 216 - 349
Target Start/End: Original strand, 25857685 - 25857822
Alignment:
Q  216 ttatgcagcataagagacact-tttttattcaataaaattattcgaga-ttttctctcaattttgatggattccgaaaacccttat----tttgataggt 309  Q
    ||||| ||| ||||||||||  |||||||||||||| | |||| |||| ||||||||||||| || |||||| || ||||||||||    |||||||| |    
T  25857685 ttatgtagcctaagagacacactttttattcaataataatatttgagacttttctctcaattgtggtggatttcggaaacccttattttatttgatagat 25857784  T
Q  310 ttgtcgcttgcaacctgtcagtttatcttttaggtttagc 349  Q
    |||| ||||||||  |||| ||||||||||||||||||||    
T  25857785 ttgttgcttgcaa--tgtctgtttatcttttaggtttagc 25857822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 112
Target Start/End: Complemental strand, 37180115 - 37180069
Alignment:
Q  66 ttagtccttacttaaattttattaaatttttggtccccaacgttttt 112  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||    
T  37180115 ttagtccctacttaaattttattaaatttttggtccccaacgttttt 37180069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 236 - 276
Target Start/End: Complemental strand, 45168466 - 45168426
Alignment:
Q  236 ttttttattcaataaaattattcgagattttctctcaattt 276  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  45168466 ttttttattcaataaaattattcgagattttctctcaattt 45168426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 66 - 122
Target Start/End: Original strand, 45234460 - 45234516
Alignment:
Q  66 ttagtccttacttaaattttattaaatttttggtccccaacgtttttggccgttagc 122  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||  ||||||||    
T  45234460 ttagtccctacttaaattttattaaatttttgatccccaacgtttttttccgttagc 45234516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 56 - 112
Target Start/End: Original strand, 50614280 - 50614336
Alignment:
Q  56 gttttaaaccttagtccttacttaaattttattaaatttttggtccccaacgttttt 112  Q
    ||||| ||| ||||||| ||||||||||||||||||||||||||||||||| |||||    
T  50614280 gttttcaacattagtccctacttaaattttattaaatttttggtccccaacattttt 50614336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 50805308 - 50805264
Alignment:
Q  8 gtccacaattaggaattgattcgtcaaaaccatattaatttggtg 52  Q
    |||||||||||||||||||||||||||||||||||| ||||||||    
T  50805308 gtccacaattaggaattgattcgtcaaaaccatattgatttggtg 50805264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 50870569 - 50870613
Alignment:
Q  8 gtccacaattaggaattgattcgtcaaaaccatattaatttggtg 52  Q
    |||||||||||||||||||||||||||||||||||| ||||||||    
T  50870569 gtccacaattaggaattgattcgtcaaaaccatattgatttggtg 50870613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 68 - 122
Target Start/End: Complemental strand, 1430453 - 1430399
Alignment:
Q  68 agtccttacttaaattttattaaatttttggtccccaacgtttttggccgttagc 122  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||  ||||||||    
T  1430453 agtccctacttaaattttattaaatttttggtccccgacgtttttttccgttagc 1430399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 66 - 112
Target Start/End: Original strand, 32942733 - 32942779
Alignment:
Q  66 ttagtccttacttaaattttattaaatttttggtccccaacgttttt 112  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||    
T  32942733 ttagtccctacttaaattttattaaatttttgatccccaacgttttt 32942779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 143
Target Start/End: Complemental strand, 19831164 - 19831087
Alignment:
Q  66 ttagtccttacttaaattttattaaatttttggtccccaacgtttttggccgttagcgaatttggtccctaccgtcaa 143  Q
    ||||||| ||||||||||||||||||||||||||  |||| ||||||| ||||||  | ||||||||| | |||||||    
T  19831164 ttagtccctacttaaattttattaaatttttggtttccaatgtttttgtccgttaatgtatttggtccttgccgtcaa 19831087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 112
Target Start/End: Original strand, 27867810 - 27867867
Alignment:
Q  55 agttttaaaccttagtccttacttaaattttattaaatttttggtccccaacgttttt 112  Q
    |||||| ||| ||||| | |||||||||||||||||||||||||||| ||||||||||    
T  27867810 agttttcaacattagttcatacttaaattttattaaatttttggtcctcaacgttttt 27867867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 355
Target Start/End: Original strand, 1151109 - 1151237
Alignment:
Q  226 taagagacacttttttattcaataaaattattcgagattttctctcaattttgatggattccgaaaacccttattttgataggtttgtcgcttgc-aacc 324  Q
    ||||| ||| ||||| ||||||||||| |  | |||| ||| |||||||| || ||||||||||||||||   ||||||||||||||| |||||| |||     
T  1151109 taagaaacagtttttcattcaataaaaattatagagacttt-tctcaattctggtggattccgaaaaccc---ttttgataggtttgttgcttgcaaact 1151204  T
Q  325 tgtcagtttatcttt--taggtttagcgcttgc 355  Q
    |||| ||||||||||  ||||||||| ||||||    
T  1151205 tgtctgtttatcttttataggtttagtgcttgc 1151237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 288
Target Start/End: Complemental strand, 39913436 - 39913350
Alignment:
Q  203 tttaaacagaacattatgcagcataagagacactttttt-attcaataaaattattcgaga-ttttctctcaattttgatggattccg 288  Q
    |||||||||||| ||||||||| |||||| ||| ||||| ||||||||||| ||||||||| ||||||| ||||| || |||||||||    
T  39913436 tttaaacagaac-ttatgcagcctaagaggcacatttttgattcaataaaaatattcgagacttttctcccaattctggtggattccg 39913350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 112
Target Start/End: Complemental strand, 117975 - 117937
Alignment:
Q  74 tacttaaattttattaaatttttggtccccaacgttttt 112  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  117975 tacttaaattttattaaatttttggtccccgacgttttt 117937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 112
Target Start/End: Original strand, 19669441 - 19669487
Alignment:
Q  66 ttagtccttacttaaattttattaaatttttggtccccaacgttttt 112  Q
    ||||||| |||||||||||||||||||||||| || |||||||||||    
T  19669441 ttagtccctacttaaattttattaaatttttgatctccaacgttttt 19669487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 112
Target Start/End: Original strand, 37178691 - 37178729
Alignment:
Q  74 tacttaaattttattaaatttttggtccccaacgttttt 112  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  37178691 tacttaaattttattaaatttttgatccccaacgttttt 37178729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 112
Target Start/End: Complemental strand, 41786617 - 41786579
Alignment:
Q  74 tacttaaattttattaaatttttggtccccaacgttttt 112  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  41786617 tacttaaattttattaaatttttgatccccaacgttttt 41786579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 112
Target Start/End: Original strand, 54185354 - 54185392
Alignment:
Q  74 tacttaaattttattaaatttttggtccccaacgttttt 112  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  54185354 tacttaaattttattaaatttttggtccacaacgttttt 54185392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 350
Target Start/End: Complemental strand, 1697205 - 1697061
Alignment:
Q  203 tttaaacagaacattatgcagcataagagacacttttttattcaataaaattattcgaga-ttttctctcaattttgatggattccgaaaacccttattt 301  Q
    |||||||||||| ||||||| | ||||||| ||||||| |||||||||||||| || ||| |||||||  |||| |  |||||||   |||| | || |     
T  1697205 tttaaacagaac-ttatgcaacttaagagatactttttcattcaataaaatta-tcaagacttttctc-aaattctagtggattctagaaactcata-ta 1697110  T
Q  302 tgataggtttgtcgcttgcaacctgtcagtttatcttttaggtttagcg 350  Q
    |||||||||||||||||||||||||||  ||||||||| | ||||||||    
T  1697109 tgataggtttgtcgcttgcaacctgtctatttatctttcatgtttagcg 1697061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 321
Target Start/End: Complemental strand, 33620213 - 33620096
Alignment:
Q  203 tttaaacagaacattatgcagcataagagaca-cttttttattcaataaaattattcgagatttt-ctctcaattttgatggattccgaaaacccttatt 300  Q
    |||||||| ||| |||| |||| ||||||||| |||||| ||||||||||| ||| ||||||||| ||||||||| ||  |||||| | ||||||||| |    
T  33620213 tttaaacaaaac-ttatacagcctaagagacatctttttaattcaataaaaatat-cgagatttttctctcaattctggaggattctggaaaccctta-t 33620117  T
Q  301 ttgataggtttgtcgcttgca 321  Q
    |||||||||||  ||||||||    
T  33620116 ttgataggttttgcgcttgca 33620096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 112
Target Start/End: Complemental strand, 54185885 - 54185829
Alignment:
Q  56 gttttaaaccttagtccttacttaaattttattaaatttttggtccccaacgttttt 112  Q
    ||||| ||| ||| ||| |||||||||||||||||||||||| |||||||| |||||    
T  54185885 gttttcaacattaatccatacttaaattttattaaatttttgatccccaacattttt 54185829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 69 - 112
Target Start/End: Complemental strand, 41928407 - 41928364
Alignment:
Q  69 gtccttacttaaattttattaaatttttggtccccaacgttttt 112  Q
    ||||||| ||||||||||||||||||||  ||||||||||||||    
T  41928407 gtccttatttaaattttattaaatttttcatccccaacgttttt 41928364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 66 - 125
Target Start/End: Original strand, 44555111 - 44555170
Alignment:
Q  66 ttagtccttacttaaattttattaaatttttggtccccaacgtttttggccgttagcgaa 125  Q
    ||||||| ||||||||||||||||||||||| || ||| || |||||  |||||||||||    
T  44555111 ttagtccctacttaaattttattaaattttttgttcccgacatttttttccgttagcgaa 44555170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 112
Target Start/End: Complemental strand, 8576478 - 8576432
Alignment:
Q  66 ttagtccttacttaaattttattaaatttttggtccccaacgttttt 112  Q
    ||||||| || ||||||||||||||||||||  ||||||||||||||    
T  8576478 ttagtccctatttaaattttattaaatttttcttccccaacgttttt 8576432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 112
Target Start/End: Complemental strand, 44558117 - 44558071
Alignment:
Q  66 ttagtccttacttaaattttattaaatttttggtccccaacgttttt 112  Q
    ||||||| ||||||||||||||||||||||| |||||  ||||||||    
T  44558117 ttagtccctacttaaattttattaaatttttcgtccctgacgttttt 44558071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 143
Target Start/End: Original strand, 52700892 - 52700961
Alignment:
Q  74 tacttaaattttattaaatttttggtccccaacgtttttggccgttagcgaatttggtccctaccgtcaa 143  Q
    |||| ||||||||||||||||||  ||||||||||||||  ||||| |  | |||||||| |||||||||    
T  52700892 tactaaaattttattaaatttttcatccccaacgtttttttccgtttgtaagtttggtccttaccgtcaa 52700961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 112
Target Start/End: Complemental strand, 32944167 - 32944111
Alignment:
Q  56 gttttaaaccttagtccttacttaaattttattaaatttttggtccccaacgttttt 112  Q
    ||||| ||| ||||||  |||||||||||||||||||||||||| |  |||||||||    
T  32944167 gtttttaacattagtctctacttaaattttattaaatttttggttcttaacgttttt 32944111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 122
Target Start/End: Complemental strand, 45235895 - 45235839
Alignment:
Q  66 ttagtccttacttaaattttattaaatttttggtccccaacgtttttggccgttagc 122  Q
    ||||| |||||||||||||||||||||||||  | | ||||||||||  ||||||||    
T  45235895 ttagttcttacttaaattttattaaattttttattctcaacgtttttttccgttagc 45235839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 3e-33; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 232 - 324
Target Start/End: Complemental strand, 40778964 - 40778872
Alignment:
Q  232 acacttttttattcaataaaattattcgagattttctctcaattttgatggattccgaaaacccttattttgataggtttgtcgcttgcaacc 324  Q
    ||||||||| |||||||||||||||||||||||||||||||||| || ||||||||  |||||||||||||||||||||||||||||||||||    
T  40778964 acactttttgattcaataaaattattcgagattttctctcaattctggtggattccagaaacccttattttgataggtttgtcgcttgcaacc 40778872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 203 - 355
Target Start/End: Complemental strand, 19677337 - 19677186
Alignment:
Q  203 tttaaacagaacattatgcagcataagagacacttttt-tattcaataaaattattcgaga-ttttctctcaattttgatggattccgaaaacccttatt 300  Q
    |||||||||||| ||||||| | |||||| |||  ||| ||||||||||||| |||||||| ||||||||||||| || |||||||||||||||||||||    
T  19677337 tttaaacagaac-ttatgcatcctaagaggcacactttgtattcaataaaat-attcgagacttttctctcaattctggtggattccgaaaacccttatt 19677240  T
Q  301 ttgataggtttgtcgcttgcaacctgtcagtttatcttttaggtttagcgcttgc 355  Q
    | || |||||||||||||||||||| || |||||||||||||| |||||||||||    
T  19677239 t-gaaaggtttgtcgcttgcaacctatctgtttatcttttaggcttagcgcttgc 19677186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 232 - 324
Target Start/End: Complemental strand, 21849149 - 21849051
Alignment:
Q  232 acacttttttattcaataaaattattcgagattttctctcaattttgatggattccgaaaaccc------ttattttgataggtttgtcgcttgcaacc 324  Q
    ||||||||| |||||||||||||||||||||||||||||||||| |  |||||||||||||| |      ||||||||||| |||||||||||||||||    
T  21849149 acactttttgattcaataaaattattcgagattttctctcaattctagtggattccgaaaacacttatttttattttgataagtttgtcgcttgcaacc 21849051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 66 - 155
Target Start/End: Complemental strand, 23318086 - 23317997
Alignment:
Q  66 ttagtccttacttaaattttattaaatttttggtccccaacgtttttggccgttagcgaatttggtccctaccgtcaattgttgatgatt 155  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| |||||| || || |||||||  ||||| || |||| ||||||    
T  23318086 ttagtccctacttaaattttattaaatttttggtccccaacgttttttgccgtttgcaaacttggtcctcaccgtgaaatgttaatgatt 23317997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 203 - 322
Target Start/End: Complemental strand, 19497480 - 19497363
Alignment:
Q  203 tttaaacagaacattatgcagcataagagacacttttttattcaataaaattattcgagattttctctcaa-ttttgatggattccgaaaacccttattt 301  Q
    |||||||||||||||||||||| |||||| |||||||| ||||||||| ||| || |||||||| |||||| |||||||||||| || ||  || |||||    
T  19497480 tttaaacagaacattatgcagcctaagaggcactttttgattcaataatatt-ttagagattttttctcaatttttgatggatttcggaa--ccctattt 19497384  T
Q  302 tgataggtttgtcgcttgcaa 322  Q
    | | | |||||||||||||||    
T  19497383 tcacaagtttgtcgcttgcaa 19497363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 66 - 125
Target Start/End: Original strand, 26864976 - 26865035
Alignment:
Q  66 ttagtccttacttaaattttattaaatttttggtccccaacgtttttggccgttagcgaa 125  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||||  |||||||||||    
T  26864976 ttagtccctacttaaattttattcaatttttggtccccaacgtttttttccgttagcgaa 26865035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 156
Target Start/End: Complemental strand, 41140171 - 41140081
Alignment:
Q  66 ttagtccttacttaaattttattaaatttttggtccccaacgtttttggccgttagcgaatttggtccctaccgtcaattgttgatgattg 156  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||  |||||||| || | ||| || || || |||||||| ||||||    
T  41140171 ttagtccctacttaaattttattaaatttttggtccccaatgtttttttccgttagcaaaataggttcccactgttaattgttgctgattg 41140081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 226 - 347
Target Start/End: Original strand, 7775324 - 7775442
Alignment:
Q  226 taagagacacttttttattcaataaaattattcgagattttctctcaattttgatggattccgaaaacccttattttgataggtttgtcgcttgcaacct 325  Q
    ||||||||| ||||  ||||||||||||||| | ||| ||| ||| |||| |  ||||||||||||||| || |||||| |||||||| ||||||||| |    
T  7775324 taagagacatttttccattcaataaaattat-ctagacttt-tcttaattctagtggattccgaaaaccttt-ttttgacaggtttgtagcttgcaactt 7775420  T
Q  326 gtcagtttatcttttaggttta 347  Q
    ||| ||||||||||||||||||    
T  7775421 gtctgtttatcttttaggttta 7775442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 348
Target Start/End: Complemental strand, 35160899 - 35160790
Alignment:
Q  237 tttttattcaataaaattattcgagattttctctcaattttgatggattccgaaaacccttattttgataggtttgtcgcttgcaacctgtcagtttatc 336  Q
    |||| ||||||||||||||| |||||  || ||| |||| || |||| |||  |||||||||||| || |||||||||| ||||||| |||| |||||||    
T  35160899 ttttcattcaataaaattat-cgagaacttttcttaattctggtggaatcctgaaacccttattt-gacaggtttgtcgtttgcaacttgtctgtttatc 35160802  T
Q  337 ttttaggtttag 348  Q
    ||||||||||||    
T  35160801 ttttaggtttag 35160790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 66 - 112
Target Start/End: Complemental strand, 8218550 - 8218504
Alignment:
Q  66 ttagtccttacttaaattttattaaatttttggtccccaacgttttt 112  Q
    ||||||| ||||||||||||||||| |||||||||||||||||||||    
T  8218550 ttagtccctacttaaattttattaagtttttggtccccaacgttttt 8218504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 230 - 352
Target Start/End: Complemental strand, 15385133 - 15385013
Alignment:
Q  230 agacacttttttattcaataaaattattcgagattttctctcaattttgatggattccgaaaacccttattttgataggtttgtcgcttgcaacctgtca 329  Q
    ||||| ||||| ||||||||||||||| |||||  || |||||||||| ||||||| || |||| |||||||  | || |||||||||||| || ||||     
T  15385133 agacattttttcattcaataaaattat-cgagaacttttctcaattttaatggatttcggaaactcttattta-acagatttgtcgcttgcgacttgtct 15385036  T
Q  330 gtttatcttttaggtttagcgct 352  Q
    |||||||||||| ||||| ||||    
T  15385035 gtttatcttttaagtttaacgct 15385013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 66 - 112
Target Start/End: Original strand, 41138771 - 41138817
Alignment:
Q  66 ttagtccttacttaaattttattaaatttttggtccccaacgttttt 112  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||    
T  41138771 ttagtccctacttaaattttattaaatttttggtccccaatgttttt 41138817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 66 - 122
Target Start/End: Complemental strand, 13921203 - 13921147
Alignment:
Q  66 ttagtccttacttaaattttattaaatttttggtccccaacgtttttggccgttagc 122  Q
    ||||||| || ||||||||||||||||||||||||||||| ||||||  ||||||||    
T  13921203 ttagtccctatttaaattttattaaatttttggtccccaatgtttttttccgttagc 13921147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 66 - 122
Target Start/End: Complemental strand, 18951194 - 18951138
Alignment:
Q  66 ttagtccttacttaaattttattaaatttttggtccccaacgtttttggccgttagc 122  Q
    ||||||| |||||||||||||||||||||||| |||||||| |||||  ||||||||    
T  18951194 ttagtccctacttaaattttattaaatttttgatccccaacatttttttccgttagc 18951138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 66 - 122
Target Start/End: Complemental strand, 26866228 - 26866172
Alignment:
Q  66 ttagtccttacttaaattttattaaatttttggtccccaacgtttttggccgttagc 122  Q
    ||||||| |||||||||||||||||||||||| ||||| ||||||||  ||||||||    
T  26866228 ttagtccctacttaaattttattaaatttttgctccccgacgtttttttccgttagc 26866172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 56 - 112
Target Start/End: Original strand, 43439984 - 43440040
Alignment:
Q  56 gttttaaaccttagtccttacttaaattttattaaatttttggtccccaacgttttt 112  Q
    ||||| ||| ||||| | ||||||||||||||||||||||||||||||||| |||||    
T  43439984 gttttcaacattagttcctacttaaattttattaaatttttggtccccaaccttttt 43440040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 103
Target Start/End: Original strand, 19116903 - 19116940
Alignment:
Q  66 ttagtccttacttaaattttattaaatttttggtcccc 103  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  19116903 ttagtccctacttaaattttattaaatttttggtcccc 19116940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 23312710 - 23312755
Alignment:
Q  74 tacttaaattttattaaatttttggtccccaacgtttttggccgtt 119  Q
    ||||||||||||||||||||||||||||||||  ||||| ||||||    
T  23312710 tacttaaattttattaaatttttggtccccaatattttttgccgtt 23312755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 111
Target Start/End: Original strand, 20898500 - 20898536
Alignment:
Q  75 acttaaattttattaaatttttggtccccaacgtttt 111  Q
    ||||||||| |||||||||||||||||||||||||||    
T  20898500 acttaaattgtattaaatttttggtccccaacgtttt 20898536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 74 - 125
Target Start/End: Complemental strand, 34527643 - 34527593
Alignment:
Q  74 tacttaaattttattaaatttttggtccccaacgtttttggccgttagcgaa 125  Q
    |||||||||||||||||||||||||| ||||| ||||||  |||||||||||    
T  34527643 tacttaaattttattaaatttttggt-cccaatgtttttttccgttagcgaa 34527593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 143
Target Start/End: Original strand, 37812010 - 37812084
Alignment:
Q  69 gtccttacttaaattttattaaatttttggtccccaacgtttttggccgttagcgaatttggtccctaccgtcaa 143  Q
    |||| |||| ||||||||||||||||||  ||||||||||||||  ||||| |  | |||||||| |||||||||    
T  37812010 gtccctactaaaattttattaaatttttcatccccaacgtttttttccgtttgtaagtttggtccttaccgtcaa 37812084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 112
Target Start/End: Original strand, 38691741 - 38691779
Alignment:
Q  74 tacttaaattttattaaatttttggtccccaacgttttt 112  Q
    ||||||||||||||||||| |||||||||||| ||||||    
T  38691741 tacttaaattttattaaatatttggtccccaatgttttt 38691779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 102
Target Start/End: Complemental strand, 43441421 - 43441375
Alignment:
Q  56 gttttaaaccttagtccttacttaaattttattaaatttttggtccc 102  Q
    ||||| ||| ||||||  |||||||||||||||||||||||||||||    
T  43441421 gttttcaacattagtctctacttaaattttattaaatttttggtccc 43441375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 156
Target Start/End: Complemental strand, 38693980 - 38693899
Alignment:
Q  75 acttaaattttattaaatttttggtccccaacgtttttggccgttagcgaatttggtccctaccgtcaattgttgatgattg 156  Q
    ||||||||||||||||||||||| ||||| || |||||  |||||||| || | |||||  || || |||||||| ||||||    
T  38693980 acttaaattttattaaatttttgatcccctacatttttttccgttagcaaaataggtcctcactgttaattgttgttgattg 38693899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 112
Target Start/End: Complemental strand, 42258455 - 42258414
Alignment:
Q  71 ccttacttaaattttattaaatttttggtccccaacgttttt 112  Q
    ||||||| ||||||||||||||||||  ||||||||||||||    
T  42258455 ccttactaaaattttattaaatttttcatccccaacgttttt 42258414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 122
Target Start/End: Original strand, 8217273 - 8217316
Alignment:
Q  78 taaattttattaaatttttggtccccaacgtttttggccgttagc 122  Q
    |||||||||||||||||||||| ||||||||||||  ||||||||    
T  8217273 taaattttattaaatttttggt-cccaacgtttttttccgttagc 8217316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 102
Target Start/End: Original strand, 34526775 - 34526803
Alignment:
Q  74 tacttaaattttattaaatttttggtccc 102  Q
    |||||||||||||||||||||||||||||    
T  34526775 tacttaaattttattaaatttttggtccc 34526803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 226 - 354
Target Start/End: Complemental strand, 8339 - 8212
Alignment:
Q  226 taagagacacttttttattcaataaaattattcgagat-tttctctcaattttgatggattccgaaaacccttattttgataggtttgtcgcttgcaacc 324  Q
    ||||||||||||||| ||||||| ||||| |||||||| ||| |||||||| |||||||||||  |||||||||||| || ||||||||||||||||||     
T  8339 taagagacactttttcattcaatcaaatt-ttcgagatctttttctcaattctgatggattccagaaacccttattt-gacaggtttgtcgcttgcaact 8242  T
Q  325 tgtcagtttatcttttaggtttagcgcttg 354  Q
    |||| ||||||||| ||||||||| |||||    
T  8241 tgtctgtttatcttctaggtttagagcttg 8212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 237 - 325
Target Start/End: Complemental strand, 45435 - 45347
Alignment:
Q  237 tttttattcaataaaattattcgagattttctctcaattt-tgatggattccgaaaacccttattttgataggtttgtcgcttgcaacct 325  Q
    |||||||||| ||| | ||||||||||||||||||||||| || ||||||| | || |||||||||||||||||||||||||||||||||    
T  45435 tttttattcattaataatattcgagattttctctcaatttctggtggattctggaa-cccttattttgataggtttgtcgcttgcaacct 45347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 232 - 322
Target Start/End: Complemental strand, 46882 - 46792
Alignment:
Q  232 acacttttttattcaataaaattattcgagattttctctcaa-ttttgatggattccgaaaacccttattttgataggtttgtcgcttgcaa 322  Q
    ||||||||||||||| ||| | |||||||||||||||||||| ||||| |||||||||  |||| | |||||||||||||||||||||||||    
T  46882 acacttttttattcattaataatattcgagattttctctcaatttttggtggattccg-gaaccttaattttgataggtttgtcgcttgcaa 46792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0651 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0651
Description:

Target: scaffold0651; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 112
Target Start/End: Original strand, 5565 - 5611
Alignment:
Q  66 ttagtccttacttaaattttattaaatttttggtccccaacgttttt 112  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||    
T  5565 ttagtccctacttaaattttattaaatttttggtccccaacgttttt 5611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0411 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0411
Description:

Target: scaffold0411; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 11461 - 11417
Alignment:
Q  8 gtccacaattaggaattgattcgtcaaaaccatattaatttggtg 52  Q
    |||||||||||||||||||||||||||||||||||| ||||||||    
T  11461 gtccacaattaggaattgattcgtcaaaaccatattgatttggtg 11417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 240542 - 240493
Alignment:
Q  73 ttacttaaattttattaaatttttggtccccaacgtttttggccgttagc 122  Q
    ||||||||||||||||||||||||||||||| ||||||||  ||||||||    
T  240542 ttacttaaattttattaaatttttggtccccgacgtttttttccgttagc 240493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 66 - 122
Target Start/End: Original strand, 239252 - 239308
Alignment:
Q  66 ttagtccttacttaaattttattaaatttttggtccccaacgtttttggccgttagc 122  Q
    ||||||| ||| ||||||||||| |||||||||||||||||||||||  ||||||||    
T  239252 ttagtccctacctaaattttattcaatttttggtccccaacgtttttttccgttagc 239308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 56 - 112
Target Start/End: Complemental strand, 25610 - 25554
Alignment:
Q  56 gttttaaaccttagtccttacttaaattttattaaatttttggtccccaacgttttt 112  Q
    ||||| ||| ||||||| |||||||||||||||||||||||||||||| | ||||||    
T  25610 gttttcaacattagtccatacttaaattttattaaatttttggtccccgaagttttt 25554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 112
Target Start/End: Complemental strand, 23425 - 23379
Alignment:
Q  66 ttagtccttacttaaattttattaaatttttggtccccaacgttttt 112  Q
    ||||||| |||||||||||||||| ||||||| ||||||||||||||    
T  23425 ttagtccctacttaaattttattacatttttgatccccaacgttttt 23379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 66 - 122
Target Start/End: Complemental strand, 49306 - 49250
Alignment:
Q  66 ttagtccttacttaaattttattaaatttttggtccccaacgtttttggccgttagc 122  Q
    ||||||| ||||||||||||||||||||||||||| || ||||||||  ||||||||    
T  49306 ttagtccctacttaaattttattaaatttttggtctccgacgtttttttccgttagc 49250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0287 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0287
Description:

Target: scaffold0287; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 125
Target Start/End: Complemental strand, 263 - 214
Alignment:
Q  74 tacttaaattttattaaatttttggtccccaacgtttttggccgttagcgaa 125  Q
    |||||||||||||||| |||||||||| |||||||||||  |||||||||||    
T  263 tacttaaattttattatatttttggtctccaacgttttt--ccgttagcgaa 214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 122
Target Start/End: Complemental strand, 38940 - 38874
Alignment:
Q  56 gttttaaaccttagtccttacttaaattttattaaatttttggtccccaacgtttttggccgttagc 122  Q
    ||||| ||| ||||| | ||| |||||||||||||||||||| ||||||| ||||||  ||||||||    
T  38940 gttttcaacattagttcctacataaattttattaaatttttgatccccaatgtttttttccgttagc 38874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 143
Target Start/End: Original strand, 282668 - 282734
Alignment:
Q  77 ttaaattttattaaatttttggtccccaacgtttttggccgttagcgaatttggtccctaccgtcaa 143  Q
    ||||||||||||||||||||  ||||||||||||||  ||||| |  | |||||||| |||||||||    
T  282668 ttaaattttattaaatttttcatccccaacgtttttttccgtttgtaagtttggtccttaccgtcaa 282734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 103
Target Start/End: Complemental strand, 10492 - 10463
Alignment:
Q  74 tacttaaattttattaaatttttggtcccc 103  Q
    ||||||||||||||||||||||||||||||    
T  10492 tacttaaattttattaaatttttggtcccc 10463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 851 times since January 2019
Visitors: 3657