View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0545_low_22 (Length: 371)

Name: NF0545_low_22
Description: NF0545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0545_low_22
NF0545_low_22
[»] chr3 (2 HSPs)
chr3 (16-267)||(29794531-29794782)
chr3 (172-224)||(8543103-8543155)
[»] chr8 (3 HSPs)
chr8 (135-234)||(15292582-15292680)
chr8 (135-234)||(15472951-15473049)
chr8 (130-223)||(14958046-14958139)
[»] chr6 (2 HSPs)
chr6 (172-224)||(33908612-33908664)
chr6 (133-224)||(1415544-1415635)
[»] chr1 (2 HSPs)
chr1 (130-215)||(6397700-6397784)
chr1 (133-209)||(7440866-7440942)
[»] chr5 (1 HSPs)
chr5 (180-224)||(7237101-7237145)
[»] chr4 (1 HSPs)
chr4 (134-234)||(865268-865368)


Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 16 - 267
Target Start/End: Complemental strand, 29794782 - 29794531
Alignment:
Q  16 ataccaaagtgcgggacatactactatgcaagacactaaagtacgattaagaggtaatattgtaaactaaatcgtaatagtatactatatattgcttata 115  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||    
T  29794782 ataccaaagtgcgggacatactactatgcaagacactaaagtacaattaagaggtaatattgtaaactaaatcgtagtagtatactatatattgcttgta 29794683  T
Q  116 accttaaatcaccgcagtaatagaaacaaaactatagctactctacagtcgtataagtaggtacaattggtcgaactgcgttaacaaatatcgtgtgttc 215  Q
    ||| ||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||| ||||| ||||||||||||||||||||||      
T  29794682 accctaaatcaccacagtaatagaaacaaaactatagctgctctacaatcgtataagtaggcacaattgatcgaattgcgttaacaaatatcgtgtgtct 29794583  T
Q  216 attatctttaattttcgttattagttgttgctctaacataatgtaacaaatt 267  Q
    ||| ||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  29794582 attgtcttttatttttgttattagttgttgctctaacataatgtaacaaatt 29794531  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 8543103 - 8543155
Alignment:
Q  172 gtaggtacaattggtcgaactgcgttaacaaatatcgtgtgttcattatcttt 224  Q
    ||||| |||||||| ||||||||||||||||||||||| |||||||| |||||    
T  8543103 gtaggcacaattggccgaactgcgttaacaaatatcgtatgttcattgtcttt 8543155  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 135 - 234
Target Start/End: Complemental strand, 15292680 - 15292582
Alignment:
Q  135 atagaaacaaaactatagctactctacagtcgtataagtaggtacaattggtcgaactgcgttaacaaatatcgtgtgttcattatctttaattttcgtt 234  Q
    |||||||||||||||||| | || || ||||||| |  |||| ||||||||||||||||||||||| |||||||||||||||||| |||| | |||||||    
T  15292680 atagaaacaaaactatagttgctttatagtcgtagagataggcacaattggtcgaactgcgttaac-aatatcgtgtgttcattaacttttactttcgtt 15292582  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 135 - 234
Target Start/End: Complemental strand, 15473049 - 15472951
Alignment:
Q  135 atagaaacaaaactatagctactctacagtcgtataagtaggtacaattggtcgaactgcgttaacaaatatcgtgtgttcattatctttaattttcgtt 234  Q
    |||||||||||||||||| | || || ||||||| |  |||| ||||||||||||||||||||||| |||||||||||||||||| |||| | |||||||    
T  15473049 atagaaacaaaactatagttgctttatagtcgtagagataggcacaattggtcgaactgcgttaac-aatatcgtgtgttcattaacttttactttcgtt 15472951  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 130 - 223
Target Start/End: Original strand, 14958046 - 14958139
Alignment:
Q  130 cagtaatagaaacaaaactatagctactctacagtcgtataagtaggtacaattggtcgaactgcgttaacaaatatcgtgtgttcattatctt 223  Q
    |||||||||||||| |||||||||| ||||| | ||| | | ||||| |||||||| ||||||| ||||||||||||| | |||||||| ||||    
T  14958046 cagtaatagaaacataactatagctgctctataatcgcagaggtaggcacaattggccgaactgtgttaacaaatatcctatgttcattgtctt 14958139  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 33908664 - 33908612
Alignment:
Q  172 gtaggtacaattggtcgaactgcgttaacaaatatcgtgtgttcattatcttt 224  Q
    ||||| |||||||||||||||||||||||||||||| |||||||||| |||||    
T  33908664 gtaggcacaattggtcgaactgcgttaacaaatatcatgtgttcattgtcttt 33908612  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 224
Target Start/End: Original strand, 1415544 - 1415635
Alignment:
Q  133 taatagaaacaaaactatagctactctacagtcgtataagtaggtacaattggtcgaactgcgttaacaaatatcgtgtgttcattatcttt 224  Q
    ||||||||||| |||||||||| ||||| | ||||| | ||||  |||||||| |||||||||||||||| |||||||| || ||| |||||    
T  1415544 taatagaaacagaactatagctgctctataatcgtagaggtagccacaattggccgaactgcgttaacaagtatcgtgtatttattgtcttt 1415635  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 130 - 215
Target Start/End: Complemental strand, 6397784 - 6397700
Alignment:
Q  130 cagtaatagaaacaaaactatagctactctacagtcgtataagtaggtacaattggtcgaactgcgttaacaaatatcgtgtgttc 215  Q
    ||||||||||||||||||||||||| ||||| ||||  | | ||||| |||| ||| |||| ||||||||||||||| || |||||    
T  6397784 cagtaatagaaacaaaactatagctgctctatagtcacagaggtaggcacaa-tggccgaagtgcgttaacaaatattgtatgttc 6397700  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 209
Target Start/End: Original strand, 7440866 - 7440942
Alignment:
Q  133 taatagaaacaaaactatagctactctacagtcgtataagtaggtacaattggtcgaactgcgttaacaaatatcgt 209  Q
    ||||| ||||||||||||| |  ||||| ||||| | |||||  || |||||| |||||||||||||||||||||||    
T  7440866 taataaaaacaaaactataaccgctctatagtcgcagaagtaaatataattggccgaactgcgttaacaaatatcgt 7440942  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 7237145 - 7237101
Alignment:
Q  180 aattggtcgaactgcgttaacaaatatcgtgtgttcattatcttt 224  Q
    |||||| ||||||||| |||||||||||||||||||||| |||||    
T  7237145 aattggccgaactgcggtaacaaatatcgtgtgttcattgtcttt 7237101  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 234
Target Start/End: Complemental strand, 865368 - 865268
Alignment:
Q  134 aatagaaacaaaactatagctactctacagtcgtataagtaggtacaattggtcgaactgcgttaacaaatatcgtgtgttcattatctttaattttcgt 233  Q
    |||||||||  || ||||||||||||| ||||||| |  ||   ||||||| ||||||  |||||||||||||||||| |||||| ||||| | ||||||    
T  865368 aatagaaacggaattatagctactctatagtcgtagagataaacacaattgatcgaaccacgttaacaaatatcgtgttttcattttcttttactttcgt 865269  T
Q  234 t 234  Q
    |    
T  865268 t 865268  T

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