View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0545_low_24 (Length: 367)

Name: NF0545_low_24
Description: NF0545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0545_low_24
NF0545_low_24
[»] chr6 (1 HSPs)
chr6 (30-356)||(11635846-11636171)


Alignment Details
Target: chr6 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 30 - 356
Target Start/End: Original strand, 11635846 - 11636171
Alignment:
Q  30 tagatttgcagagaatatagttgccgtaggacctatatttatatttaaaatgttaggtagagaaacttaaacgtgtattgtttgtcttgctggtttgcag 129  Q
    |||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  11635846 tagatttgcacagaatatagttgccgtaggacctat--ttatatttaaaatgttaggtacagaaacttaaacgtgtattgtttgtcttgctggtttgcag 11635943  T
Q  130 gtgcatcgtgcaaactgcagtggatctaaatactttgtctgatggtttctactcatccacacaaaataaataaattgtcattttagt-tttgaacgtgta 228  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  11635944 gtgcatcgtgcaaattgcagtggatctaaatactttgtctgatggtttctactcatccacacaaaataaataaattgtcattttagtctttgaacatgta 11636043  T
Q  229 aaatgtttgatgtgtcaagagttaaggttcaaaaacatataaataattgaattcttaaacccgtaactttaaggtttttggttaagatatgatgctctac 328  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |     
T  11636044 aaatgttttatgtgtcaagagttaaggttcaacaacatataaataattgaatttctaaacccgtaactttaaggtttttggttaagatatgatgctcaat 11636143  T
Q  329 tcatttatgtagttgttcttagtttcat 356  Q
    |||||||||| |||||||| ||||||||    
T  11636144 tcatttatgtggttgttctcagtttcat 11636171  T

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