View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0545_low_25 (Length: 366)
Name: NF0545_low_25
Description: NF0545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0545_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 9e-92; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 83 - 269
Target Start/End: Complemental strand, 4307635 - 4307449
Alignment:
| Q |
83 |
cagagatggtgggtgagttgggaaggatgattctgagtttagaaaatgagtatctgtgttaaagtttgattagatattagcttaagacaattgcttgtgt |
182 |
Q |
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| T |
4307635 |
cagagatggtgggtgagttggggaggatgattctgagtgtagaaaatgagtatctgtgttaaagtttgattagatattagcttaagacaattacttgtgt |
4307536 |
T |
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| Q |
183 |
aacaagtaattgcagagtctagtaactaactaactgttttgacagttatggaagttacaatagttagttatagttaaacaactaact |
269 |
Q |
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| T |
4307535 |
aacaagtaattgcagagtctagtaactaactaactcttttgacagttatggaagttacaatagttagttatagttaaacaactaact |
4307449 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 151 - 214
Target Start/End: Complemental strand, 27031614 - 27031552
Alignment:
| Q |
151 |
attagatattagcttaagacaattgcttgtgtaacaagtaattgcagagtctagtaactaacta |
214 |
Q |
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| T |
27031614 |
attagatattaactta-gacaattacttgtgtaacaagtaattgcacagtctagtaactaacta |
27031552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 139 - 205
Target Start/End: Original strand, 27073291 - 27073356
Alignment:
| Q |
139 |
tgttaaagtttgattagatattagcttaagacaattgcttgtgtaacaagtaattgcagagtctagt |
205 |
Q |
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| T |
27073291 |
tgttaaagtgtaattagatattaactta-gacaattacttgtgtaacaagtaattgcacagtctagt |
27073356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 214
Target Start/End: Complemental strand, 26991687 - 26991641
Alignment:
| Q |
168 |
gacaattgcttgtgtaacaagtaattgcagagtctagtaactaacta |
214 |
Q |
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| T |
26991687 |
gacaattacctgtctaacaagtaattgcacagtctagtaactaacta |
26991641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 206 - 269
Target Start/End: Complemental strand, 18096436 - 18096376
Alignment:
| Q |
206 |
aactaactaactgttttgacagttatggaagttacaatagttagttatagttaaacaactaact |
269 |
Q |
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|||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||| |
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| T |
18096436 |
aactaactaactgttttgactgttatggaagttac---agttagttatagttaaataactaact |
18096376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 205 - 269
Target Start/End: Original strand, 33306248 - 33306312
Alignment:
| Q |
205 |
taactaactaactgttttgacagttatggaagttacaatagttagttatagttaaacaactaact |
269 |
Q |
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||||||||||||||| |||||||||||||| |||| |||| || |||||||||||| |||||||| |
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| T |
33306248 |
taactaactaactgtcttgacagttatggatgttataataattggttatagttaaataactaact |
33306312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 214
Target Start/End: Complemental strand, 34693945 - 34693899
Alignment:
| Q |
168 |
gacaattgcttgtgtaacaagtaattgcagagtctagtaactaacta |
214 |
Q |
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||||||| | ||| ||||||||||||||| ||||||||||||||||| |
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| T |
34693945 |
gacaattacctgtctaacaagtaattgcacagtctagtaactaacta |
34693899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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